BAC Information

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BAC

Clone NameB6Ng01-257O23
Chromosome1 (Build37)
Map Location 170,507,789 - 170,606,373
singlet/doubletdoublet
Overlap genenone
Upstream geneRxrg, Lmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257O23.bB6Ng01-257O23.g
ACCGA063506GA063507
length1,1141,104
definitionB6Ng01-257O23.b B6Ng01-257O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,507,789 - 170,508,906)(170,605,290 - 170,606,373)
sequence
gaattcttcatgactttttattgctctggctagatctgttagtacagtat
taaacagaagaattttgagtgggaattattgttatgtttgtgattctact
gggggaagtatctagtctttcctaattaaatatgatgttagcttaaatgt
ttttctcaatgtttttaataagactgtagaaattcacttctatttctagt
ttgttgaaaaagattttttaaaatcgtgaaatcaggttagctttttcaaa
tatgtttttgagatgatcacatgatcttttcatcactataaaaattatcc
gaggtaattaatttgtaataaaatattttgtctcattgttttgaggttcc
attcgtagtgaatcaggctccttgtgttagcttgtagcagggctacactg
tgtatcagggacactgggcagagaaaaattctttatgctgcgaggggaga
acaaagagaagagggaggcagctgcaaacccacagttctctttgagggca
tgaccatgatgacctcaggcccttgtactagactccaacctctgaaacct
tccatcagtgacaaacagtgtcactggggaacacacctttatagacagat
tttaggggttattcagcagttaggtagtggcacgttcctttagtcccagc
actcaggaggcaaatgcaagtggatctctgagttcaaggccagcgtggtc
tatagaacaagttccagatcagccaaagctacacagggaaaccctgcctc
aacaagccctaccccaaaataagagacatagtcttcttgtcatatgtttt
attttatgtcaaaataatgtctccttaaaaaaatctaggaaatattttct
cctctcaattttacaggcccatgaaaaactggtattatttgaatgtttgg
tggaatgtgtcatcaattatctggagcttttaatttttagggggatggca
tgactttgtgactatcagtttaatatatttgataatattcagatggctta
tttttttgtcagttttatattgtgttccttttttagaaaatattctgcta
ataaacaagttatatagtgctagcatgatatcacctcatgatattcctat
aataactttatctc

gaattccgtttgttttttttgtcaatgctgtaactaaaacaaaatgttta
ttaattttcagtggagaaagggtccattgacatcaaagggagtacccaca
aaggtgataaggcgggatgtacaggtgggaggtttaggagtggatgccct
gtccgtgttcctgcatggatggaatcttaaaagtagtcaagctgtgggta
tcacttttctaattggttccaacatcgtgcagaaatgaggaaaaatgagc
tgctccgaggagcctacaggaaaagctctagccagccctggggctctgag
aagggagattcggattccatctgttgctgttgctgttgatgacgcagcta
cggccatgttagattgggagctcagtgactccctccccagacatcagtag
gcctggtagattccttttatcccagctcactcgctcttgcaccataatct
cacagatttctggagggaatgacaaacgaatgtgacttcctgagacccgc
ttgcaatcttctcgcagtacctgtgcaccagtctcaccctgccgcaggaa
aagcagcatctaccctcgtctctgttcagaacagctttggggcagagatg
gggcctgaagtaccgctcatctctccatctctatttcctaccctggaaaa
tgtaatcattagacctgaccagcgatgctgagagtgtagccaacagatca
gctgactgaattcttgggcctcaattctgccctgggactcagaaactcgg
ggaaaagaaactgacagtctccactttggaaaggctcttcggatgctact
gacatttcagaacatctagacaagccctgcactcctccatagctccatcc
atgattgtgttttcctctctgccacaatttaaaggcttgtccgggtacct
catctgcaggtttcaatcaactgcagagggagaaaaaaaaaaaaatcttt
gaaagataattacattctgttacctggagcaattactgacttttttttcc
tcaatattattcttctcaacaaatacagtcctaacactatatttacaata
gcatttacattgttataggtatttataagggaatcctagaggatgatttt
atac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170507789_170508906
seq2: B6Ng01-257O23.b_46_1159

seq1  GAATTCTTCATGACTTTTTATTGCTCTGGCTAGATCTGTTAGTACAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGACTTTTTATTGCTCTGGCTAGATCTGTTAGTACAGTAT  50

seq1  TAAACAGAAGAATTTTGAGTGGGAATTATTGTTATGTTTGTGATTCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAGAATTTTGAGTGGGAATTATTGTTATGTTTGTGATTCTACT  100

seq1  GGGGGAAGTATCTAGTCTTTCCTAATTAAATATGATGTTAGCTTAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGTATCTAGTCTTTCCTAATTAAATATGATGTTAGCTTAAATGT  150

seq1  TTTTCTCAATGTTTTTAATAAGACTGTAGAAATTCACTTCTATTTCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAATGTTTTTAATAAGACTGTAGAAATTCACTTCTATTTCTAGT  200

seq1  TTGTTGAAAAAGATTTTTTAAAATCGTGAAATCAGGTTAGCTTTTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAAAGATTTTTTAAAATCGTGAAATCAGGTTAGCTTTTTCAAA  250

seq1  TATGTTTTTGAGATGATCACATGATCTTTTCATCACTATAAAAATTATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTGAGATGATCACATGATCTTTTCATCACTATAAAAATTATCC  300

seq1  GAGGTAATTAATTTGTAATAAAATATTTTGTCTCATTGTTTTGAGGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATTAATTTGTAATAAAATATTTTGTCTCATTGTTTTGAGGTTCC  350

seq1  ATTCGTAGTGAATCAGGCTCCTTGTGTTAGCTTGTAGCAGGGCTACACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTAGTGAATCAGGCTCCTTGTGTTAGCTTGTAGCAGGGCTACACTG  400

seq1  TGTATCAGGGACACTGGGCAGAGAAAAATTCTTTATGCTGCGAGGGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGGGACACTGGGCAGAGAAAAATTCTTTATGCTGCGAGGGGAGA  450

seq1  ACAAAGAGAAGAGGGAGGCAGCTGCAAACCCACAGTTCTCTTTGAGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGAAGAGGGAGGCAGCTGCAAACCCACAGTTCTCTTTGAGGGCA  500

seq1  TGACCATGATGACCTCAGGCCCTTGTACTAGACTCCAACCTCTGAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGATGACCTCAGGCCCTTGTACTAGACTCCAACCTCTGAAACCT  550

seq1  TCCATCAGTGACAAACAGTGTCACTGGGGAACACACCTTTATAGACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGTGACAAACAGTGTCACTGGGGAACACACCTTTATAGACAGAT  600

seq1  TTTAGGGGTTATTCAGCAGTTAGGTAGTGGCACGTTCCTTTAGTCCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGTTATTCAGCAGTTAGGTAGTGGCACGTTCCTTTAGTCCCAGC  650

seq1  ACTCAGGAGGCAAATGCAAGTGGATCTCTGAGTTCAAGGCCAGCGTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGGCAAATGCAAGTGGATCTCTGAGTTCAAGGCCAGCGTGGTC  700

seq1  TATAGAACAAGTTCCAGATCAGCCAAAGCTACACAGGGAAACCCTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAACAAGTTCCAGATCAGCCAAAGCTACACAGGGAAACCCTGCCTC  750

seq1  AACAAGCCCTACCCCAAAATAAGAGACATAGTCTTCTTGTCATATGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCCTACCCCAAAATAAGAGACATAGTCTTCTTGTCATATGTTTT  800

seq1  ATTTTATGTCAAAATAATGTCTCCTTAAAAAAATCTAGGAAATATTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTCAAAATAATGTCTCCTTAAAAAAATCTAGGAAATATTTTCT  850

seq1  CCTCTCAATTTTACAGGCCCATGAAAAACTGGTATTATTTGAATGTTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAATTTTACAGGCCCATGAAAAACTGGTATTATTTGAATGTTTGG  900

seq1  TGGAATGTGTCATCAAATTATCTGGAGCTTTTAATTTTTAGGGGGATGGC  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGAATGTGTCATC-AATTATCTGGAGCTTTTAATTTTTAGGGGGATGGC  949

seq1  ATGACTTTGTGACTATCAGTTTAATATATTTGATAAATATTCAGATGGCT  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGACTTTGTGACTATCAGTTTAATATATTTGAT-AATATTCAGATGGCT  998

seq1  TA-TTTTTTGTCAGTTTTATATTGTGTTCCTTTTTTAGAAAAATATTCTG  1049
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTTTTTTGTCAGTTTTATATTGTGTTCCTTTTTTAG-AAAATATTCTG  1047

seq1  CT-ATATACAAGTTATATAGTTGCTAGCATGATATCA-CTCATGATATTT  1097
      || ||| ||||||||||||| |||||||||||||||| ||||||||||| 
seq2  CTAATAAACAAGTTATATAG-TGCTAGCATGATATCACCTCATGATATT-  1095

seq1  CCTTATAATAACTTTTATCTC  1118
       | ||||||||| ||||||||
seq2  -CCTATAATAAC-TTTATCTC  1114


seq1: chr1_170605290_170606373
seq2: B6Ng01-257O23.g_69_1172 (reverse)

seq1  GTAT-AAATCAT-CTCTA-GATT-CCTTAT-AATACCTAATACAATGTAA  45
      |||| ||||||| ||||| |||| |||||| ||||||||  |||||||||
seq2  GTATAAAATCATCCTCTAGGATTCCCTTATAAATACCTATAACAATGTAA  50

seq1  ATGCTA-TGTAAATA-GTTGTTA-GACTGTA-TTGTTGAG-AGAATAATA  90
      |||||| ||||||||   ||||| ||||||| |||||||| |||||||||
seq2  ATGCTATTGTAAATATAGTGTTAGGACTGTATTTGTTGAGAAGAATAATA  100

seq1  ATGA-GAAAAAAAAGTCAGTATTTGCT-CAG--TACAG-ATGTAATTATC  135
       ||| |||||||||||||||| ||||| |||   |||| |||||||||||
seq2  TTGAGGAAAAAAAAGTCAGTAATTGCTCCAGGTAACAGAATGTAATTATC  150

seq1  TTTCAAAGATTTTTTTTTTTCT---CCTCTGCAGTTGATTG-AACCTGCA  181
      |||||||||||||||||||| |   |||||||||||||||| ||||||||
seq2  TTTCAAAGATTTTTTTTTTTTTCTCCCTCTGCAGTTGATTGAAACCTGCA  200

seq1  GATGAGGTA-CCGGACAAGCCTTTAAATTGTGGCAGAGAGGAAAACACAA  230
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGTACCCGGACAAGCCTTTAAATTGTGGCAGAGAGGAAAACACAA  250

seq1  TCATGGATGGAGCTATGGAGGAGTGCAGGGCTTGTCTAGATGTTCTGAAA  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATGGAGCTATGGAGGAGTGCAGGGCTTGTCTAGATGTTCTGAAA  300

seq1  TGTCAGTAGCATCCGAAGAGCCTTTCCAAAGTGGAGACTGTCAGTTTCTT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTAGCATCCGAAGAGCCTTTCCAAAGTGGAGACTGTCAGTTTCTT  350

seq1  TTCCCCGAGTTTCTGAGTCCCAGGGCAGAATTGAGGCCCAAGAATTCAGT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCGAGTTTCTGAGTCCCAGGGCAGAATTGAGGCCCAAGAATTCAGT  400

seq1  CAGCTGATCTGTTGGCTACACTCTCAGCATCGCTGGTCAGGTCTAATGAT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATCTGTTGGCTACACTCTCAGCATCGCTGGTCAGGTCTAATGAT  450

seq1  TACATTTTCCAGGGTAGGAAATAGAGATGGAGAGATGAGCGGTACTTCAG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTCCAGGGTAGGAAATAGAGATGGAGAGATGAGCGGTACTTCAG  500

seq1  GCCCCATCTCTGCCCCAAAGCTGTTCTGAACAGAGACGAGGGTAGATGCT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATCTCTGCCCCAAAGCTGTTCTGAACAGAGACGAGGGTAGATGCT  550

seq1  GCTTTTCCTGCGGCAGGGTGAGACTGGTGCACAGGTACTGCGAGAAGATT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCTGCGGCAGGGTGAGACTGGTGCACAGGTACTGCGAGAAGATT  600

seq1  GCAAGCGGGTCTCAGGAAGTCACATTCGTTTGTCATTCCCTCCAGAAATC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCGGGTCTCAGGAAGTCACATTCGTTTGTCATTCCCTCCAGAAATC  650

seq1  TGTGAGATTATGGTGCAAGAGCGAGTGAGCTGGGATAAAAGGAATCTACC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATTATGGTGCAAGAGCGAGTGAGCTGGGATAAAAGGAATCTACC  700

seq1  AGGCCTACTGATGTCTGGGGAGGGAGTCACTGAGCTCCCAATCTAACATG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTACTGATGTCTGGGGAGGGAGTCACTGAGCTCCCAATCTAACATG  750

seq1  GCCGTAGCTGCGTCATCAACAGCAACAGCAACAGATGGAATCCGAATCTC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTAGCTGCGTCATCAACAGCAACAGCAACAGATGGAATCCGAATCTC  800

seq1  CCTTCTCAGAGCCCCAGGGCTGGCTAGAGCTTTTCCTGTAGGCTCCTCGG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAGAGCCCCAGGGCTGGCTAGAGCTTTTCCTGTAGGCTCCTCGG  850

seq1  AGCAGCTCATTTTTCCTCATTTCTGCACGATGTTGGAACCAATTAGAAAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCATTTTTCCTCATTTCTGCACGATGTTGGAACCAATTAGAAAA  900

seq1  GTGATACCCACAGCTTGACTACTTTTAAGATTCCATCCATGCAGGAACAC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACCCACAGCTTGACTACTTTTAAGATTCCATCCATGCAGGAACAC  950

seq1  GGACAGGGCATCCACTCCTAAACCTCCCACCTGTACATCCCGCCTTATCA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGCATCCACTCCTAAACCTCCCACCTGTACATCCCGCCTTATCA  1000

seq1  CCTTTGTGGGTACTCCCTTTGATGTCAATGGACCCTTTCTCCACTGAAAA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGGGTACTCCCTTTGATGTCAATGGACCCTTTCTCCACTGAAAA  1050

seq1  TTAATAAACATTTTGTTTTAGTTACAGCATTGACAAAAAAGACAAACGGA  1080
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTAATAAACATTTTGTTTTAGTTACAGCATTGACAAAAAAAACAAACGGA  1100

seq1  ATTC  1084
      ||||
seq2  ATTC  1104


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