BAC Information

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BAC

Clone NameB6Ng01-257P24
Chromosome1 (Build37)
Map Location 156,463,417 - 156,464,440
singlet/doubletsinglet
Overlap geneCacna1e
Upstream geneLOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257P24.bB6Ng01-257P24.g
ACCGA063554GA063555
length1,0371,205
definitionB6Ng01-257P24.b B6Ng01-257P24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaaggaatgtggtaatgttaggcattgagctacactgagcac
atccatgttggctcccaggttttatttctttaccatttctgtctcctttg
atgactttaggcaagccatttgacctgtaatagtcattttcctctactgt
gagtttgactatagattcagtacttagttctcaaagtggctttcagtaac
tagataaaaatatggaggagctctttgtgaaccagataatgctccatgga
tgtaagctgtcatgaaaataacataagattataagcatacgtgttaatct
ctattattgagatttataaagaagatgttccacacattatcttctaacat
gttttgacagatatggtcagagaggtcccttggaaataaaggtaaaatgt
atacccagaatattattagtatcattctcctttctttgtgtacaaaacct
taaaatatcatgaccttttttgatcatttcattgataatataaaacaaag
ccgcaatagaatagttttataaaaaacacgtttctcagtgattagagaca
aaagtaagtgtagtagcttgggttccttcccatgggactccatgtacatc
tgaatgatcttggtatgtaccccacatgcctttgagggtatctcttctat
catcagagctatcatcagcttccttaacaatatggaagcaaaggcagaat
taaaagggcatgaggcatgctacacctcttgtgtgcacaggttcaagact
ttgatagtacatgtcccccgaaaatgaaccatgctggaagagtcagttag
gttgctgtatctgtcgacagcttccctttccctttctctgtgtttccatt
tctggcttctgtcatcttcttttcctctctagttgacaggctgggttgtc
cttatcagatggctttggggatggtaggacagccctccttaggaggtgtg
ctccagggttcaagctatgaaaggaacagcagccaagatatccattgatt
agatcactgtgataacctctctttgcggagagttttt
gaattctcacctgaggaataccgaatggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaacttgacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
agaaactcacacaatatgtactcactgataagtggatattagccccaaac
ctaggatacccaagatataagatataatttgctaaacacatgaaactcaa
gaagaatgaagactgaagtgtggacactatgcccctccttagatttggga
acaaaacacccatgggaaggagttacagagacaaagtttggagctgagat
gaaaaggatggaccatgtagagactgccatatccagggatccacccccat
aatcagccatccaaacgctgacaccattgcatacactagcaagatttttt
tgaaaggacccagatgtagctgtctcttgtgagactatgccggggcctag
caaacacagaagtggaatgctcacagtcagctaatgggatggatcatagg
gcttcccaattggaggagctagaaggaagtagccaaggagcttaaaggat
ctgcaccctattaggttggaacaaaccattaatgaactaacctagtactc
ccggaagcttctttgaacctctaggcctgcatatatatcaaaaggatgtg
cccctagtccggccatatcactggaaagagaagtccaatgacctttgcaa
ctttattagtccccatatatacagggggaaactcactcgtaggtgggtct
acata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156463417_156464440
seq2: B6Ng01-257P24.b_50_1086 (reverse)

seq1  AAAAACTCTCCGCAAAGAGAG--TATCACAGTGATCTAATC-ATGGATAT  47
      |||||||||||||||||||||  |||||||||||||||||| ||||||||
seq2  AAAAACTCTCCGCAAAGAGAGGTTATCACAGTGATCTAATCAATGGATAT  50

seq1  CTT-GCTGCTGTTCC-TTCATAGCTTG-ACCCTGGAGCACA-CTCCTA--  91
      ||| ||||||||||| ||||||||||| ||||||||||||| ||||||  
seq2  CTTGGCTGCTGTTCCTTTCATAGCTTGAACCCTGGAGCACACCTCCTAAG  100

seq1  GGGGGCTGTCCTACCAT-CCCAAAGCCATCTGATAAGGACAA-CCAGCCT  139
      | ||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  GAGGGCTGTCCTACCATCCCCAAAGCCATCTGATAAGGACAACCCAGCCT  150

seq1  GTCAACTAGAGAGG-AAAGAAGATGACAGAAGCCAG-AATGGAAACACAG  187
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  GTCAACTAGAGAGGAAAAGAAGATGACAGAAGCCAGAAATGGAAACACAG  200

seq1  AGAAAGGGAAAGGGAAGCTGTCGACAGATACAGCAACCTAACTGACTCTT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGAAAGGGAAGCTGTCGACAGATACAGCAACCTAACTGACTCTT  250

seq1  CCAGCATGGTTCATTTTCGGGGGACATGTACTATCAAAGTCTTGAACCTG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGGTTCATTTTCGGGGGACATGTACTATCAAAGTCTTGAACCTG  300

seq1  TGCACACAAGAGGTGTAGCATGCCTCATGCCCTTTTAATTCTGCCTTTGC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAAGAGGTGTAGCATGCCTCATGCCCTTTTAATTCTGCCTTTGC  350

seq1  TTCCATATTGTTAAGGAAGCTGATGATAGCTCTGATGATAGAAGAGATAC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATTGTTAAGGAAGCTGATGATAGCTCTGATGATAGAAGAGATAC  400

seq1  CCTCAAAGGCATGTGGGGTACATACCAAGATCATTCAGATGTACATGGAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGGCATGTGGGGTACATACCAAGATCATTCAGATGTACATGGAG  450

seq1  TCCCATGGGAAGGAACCCAAGCTACTACACTTACTTTTGTCTCTAATCAC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGGAAGGAACCCAAGCTACTACACTTACTTTTGTCTCTAATCAC  500

seq1  TGAGAAACGTGTTTTTTATAAAACTATTCTATTGCGGCTTTGTTTTATAT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACGTGTTTTTTATAAAACTATTCTATTGCGGCTTTGTTTTATAT  550

seq1  TATCAATGAAATGATCAAAAAAGGTCATGATATTTTAAGGTTTTGTACAC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGAAATGATCAAAAAAGGTCATGATATTTTAAGGTTTTGTACAC  600

seq1  AAAGAAAGGAGAATGATACTAATAATATTCTGGGTATACATTTTACCTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGGAGAATGATACTAATAATATTCTGGGTATACATTTTACCTTT  650

seq1  ATTTCCAAGGGACCTCTCTGACCATATCTGTCAAAACATGTTAGAAGATA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAGGGACCTCTCTGACCATATCTGTCAAAACATGTTAGAAGATA  700

seq1  ATGTGTGGAACATCTTCTTTATAAATCTCAATAATAGAGATTAACACGTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGAACATCTTCTTTATAAATCTCAATAATAGAGATTAACACGTA  750

seq1  TGCTTATAATCTTATGTTATTTTCATGACAGCTTACATCCATGGAGCATT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATAATCTTATGTTATTTTCATGACAGCTTACATCCATGGAGCATT  800

seq1  ATCTGGTTCACAAAGAGCTCCTCCATATTTTTATCTAGTTACTGAAAGCC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTTCACAAAGAGCTCCTCCATATTTTTATCTAGTTACTGAAAGCC  850

seq1  ACTTTGAGAACTAAGTACTGAATCTATAGTCAAACTCACAGTAGAGGAAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGAACTAAGTACTGAATCTATAGTCAAACTCACAGTAGAGGAAA  900

seq1  ATGACTATTACAGGTCAAATGGCTTGCCTAAAGTCATCAAAGGAGACAGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATTACAGGTCAAATGGCTTGCCTAAAGTCATCAAAGGAGACAGA  950

seq1  AATGGTAAAGAAATAAAACCTGGGAGCCAACATGGATGTGCTCAGTGTAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAAAGAAATAAAACCTGGGAGCCAACATGGATGTGCTCAGTGTAG  1000

seq1  CTCAATGCCTAACATTACCACATTCCTTAATGAATTC  1024
      |||||||||||||||||||||||||||||||||||||
seq2  CTCAATGCCTAACATTACCACATTCCTTAATGAATTC  1037