BAC Information

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BAC

Clone NameB6Ng01-258H04
Chromosome1 (Build37)
Map Location 161,451,493 - 161,452,637
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn1, Pappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258H04.bB6Ng01-258H04.g
ACCGA063884GA063885
length1,137751
definitionB6Ng01-258H04.b B6Ng01-258H04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttacctaatataacttgctttaagaaatctttggattaaaagg
aatgaggaagagcaaagatgggatttgatgttttgcaaatcacagttccc
atttttatggaatttgcagtttctcaaagtggaaagaaagggcagagacc
agacagttcagaggctgatgccaagacacgggcagaggcaatgtaataaa
tgagaacacgggcaagaaaactaacttgaccagagggctgcaggcttcca
cagagcacagtatctaggatgagactggaagcatgagggttattttagca
aagggccaatgagaaactgaagctgaaggcatggcaaactcaaggggatg
aagagagagggttgtgaaccttccagggtaaatattacctactatttaca
aatgaggaggctgggtcacacaaattaactagctttctaatgatctcttg
tgctcaaatcaaaagcatgtgtgtttgactctaaaatcattgtatgtaag
atgcactttctcttttctgaagtgcacatacagctctgtaaggattctag
cacacacattaacaagcatgtggcacctgcaaaaacacagaaccagtgat
caatgaacatcaggagagaaagccacaaagaaacactagtcagttcagaa
caggatcaatcaaaggtaaaataactgtttttactacatgtagaattgtc
aaatgcattaaaaagtgggactacttcggagcagctaagatattggaaac
ttggatttgagtggggcaggatacagagaggataagagaatttcacgtta
acttctgtgagctggaggagggagttctatctgggaaggctgatgaggtt
ttcaaccaggaagttgtcattaatctggaccttaatgaatttgggttctg
aaacttatcctctgttgctgtctacaaactatgagatcagatttgtctga
agaagaatggacatttaagaaagagagggtagatcactgtatataaaata
ccaaagtttggaaggtgacaggtttgggagatgtgaatgaaatgagactg
atgagctagtctgggattatgtcaagttgaagaaaggcctaactttgaga
tgtctagatgctgcctagagttgtctagagctcatat

gaattctataagggtgaccctagctaagactcctactaatggggaatata
aagcctgaatcagccatctccagtaaccaggcaagacttccaatgtaggg
attgagacactaacccagccacaaaatcttatacccataatttgtccata
atatgtcgggggtaaatgatgatgcagaatttgaggaagggccaacaaat
ggctggcccagcttgagacctataccatgaggggggcccacccctgacat
cataaaaaattaatgatattttgctatacccgcagacaggtgcctggaat
aattgtcatcagagaggcttcaccagaaatggatggaaactgatacaaag
attcacagcaaaacattaaatggagcttggggaatcctgtggaagaagga
gtgaaggagtcagaggtcaaggacaccacaagaaaacctactccatcaac
caacctgggcccacagggactgaactgccaaccagagagcatgcaaggga
tggcactaagccatctgtacatttgtagcagctgtgtggcttggtcttca
tgtgggactcctatagagggaccaggagttctctccgactacattgcctg
cctttgaatccctttcccctaactgggctgccctgtctcgtctcaacagc
tgaaaatatgcctagtcctactgcaacttgatatgtcaaggcaggttgat
gtccatgggaggcctccccttttctgaggagaaggggaggggaggtgggt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161451493_161452637
seq2: B6Ng01-258H04.b_43_1179 (reverse)

seq1  ATATGAGCTCTAGACATACTCTAGCCAGCATCTAGACATCTCAAAGTTAG  50
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  ATATGAGCTCTAGACA-ACTCTAGGCAGCATCTAGACATCTCAAAGTTAG  49

seq1  GGCTTTCTTCAAACTTGACAT-ATCCCAGACTAGCTCATCAGTCTCATTT  99
      | |||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  GCCTTTCTTC-AACTTGACATAATCCCAGACTAGCTCATCAGTCTCATTT  98

seq1  CATTCACATTCTTCCCAAACCTGTCCACCTTCCAAACTTTGGTATTTTTA  149
      |||||||||   |||||||||||| ||||||||||||||||||| |||||
seq2  CATTCACAT--CTCCCAAACCTGT-CACCTTCCAAACTTTGGTA-TTTTA  144

seq1  TATTACAGTGATCTACCCTCTCTTTCTTAAATGTTCCATTCTTCTTTCAG  199
      || |||||||||||||||||||||||||||||| |||||||||| |||||
seq2  TA-TACAGTGATCTACCCTCTCTTTCTTAAATG-TCCATTCTTC-TTCAG  191

seq1  ACAAATCTGATCTCATAGTTTGTAGACAGCAACAGAGGATAAGTTTCAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTGATCTCATAGTTTGTAGACAGCAACAGAGGATAAGTTTCAGA  241

seq1  ACCCAAATTCATTAAGGTCCAGATTAATGACAACTTCCTGGTTGAAAACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATTCATTAAGGTCCAGATTAATGACAACTTCCTGGTTGAAAACC  291

seq1  TCATCAGCCTTCCCAGATAGAACTCCCTCCTCCAGCTCACAGAAGTTAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCCTTCCCAGATAGAACTCCCTCCTCCAGCTCACAGAAGTTAAC  341

seq1  GTGAAATTCTCTTATCCTCTCTGTATCCTGCCCCACTCAAATCCAAGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTCTCTTATCCTCTCTGTATCCTGCCCCACTCAAATCCAAGTTT  391

seq1  CCAATATCTTAGCTGCTCCGAAGTAGTCCCACTTTTTAATGCATTTGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATCTTAGCTGCTCCGAAGTAGTCCCACTTTTTAATGCATTTGACA  441

seq1  ATTCTACATGTAGTAAAAACAGTTATTTTACCTTTGATTGATCCTGTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACATGTAGTAAAAACAGTTATTTTACCTTTGATTGATCCTGTTCT  491

seq1  GAACTGACTAGTGTTTCTTTGTGGCTTTCTCTCCTGATGTTCATTGATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGACTAGTGTTTCTTTGTGGCTTTCTCTCCTGATGTTCATTGATCA  541

seq1  CTGGTTCTGTGTTTTTGCAGGTGCCACATGCTTGTTAATGTGTGTGCTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTGTGTTTTTGCAGGTGCCACATGCTTGTTAATGTGTGTGCTAG  591

seq1  AATCCTTACAGAGCTGTATGTGCACTTCAGAAAAGAGAAAGTGCATCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTACAGAGCTGTATGTGCACTTCAGAAAAGAGAAAGTGCATCTTA  641

seq1  CATACAATGATTTTAGAGTCAAACACACATGCTTTTGATTTGAGCACAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATGATTTTAGAGTCAAACACACATGCTTTTGATTTGAGCACAAG  691

seq1  AGATCATTAGAAAGCTAGTTAATTTGTGTGACCCAGCCTCCTCATTTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTAGAAAGCTAGTTAATTTGTGTGACCCAGCCTCCTCATTTGTA  741

seq1  AATAGTAGGTAATATTTACCCTGGAAGGTTCACAACCCTCTCTCTTCATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGGTAATATTTACCCTGGAAGGTTCACAACCCTCTCTCTTCATC  791

seq1  CCCTTGAGTTTGCCATGCCTTCAGCTTCAGTTTCTCATTGGCCCTTTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAGTTTGCCATGCCTTCAGCTTCAGTTTCTCATTGGCCCTTTGCT  841

seq1  AAAATAACCCTCATGCTTCCAGTCTCATCCTAGATACTGTGCTCTGTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCCTCATGCTTCCAGTCTCATCCTAGATACTGTGCTCTGTGGA  891

seq1  AGCCTGCAGCCCTCTGGTCAAGTTAGTTTTCTTGCCCGTGTTCTCATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCAGCCCTCTGGTCAAGTTAGTTTTCTTGCCCGTGTTCTCATTTA  941

seq1  TTACATTGCCTCTGCCCGTGTCTTGGCATCAGCCTCTGAACTGTCTGGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGCCTCTGCCCGTGTCTTGGCATCAGCCTCTGAACTGTCTGGTC  991

seq1  TCTGCCCTTTCTTTCCACTTTGAGAAACTGCAAATTCCATAAAAATGGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTTTCTTTCCACTTTGAGAAACTGCAAATTCCATAAAAATGGGA  1041

seq1  ACTGTGATTTGCAAAACATCAAATCCCATCTTTGCTCTTCCTCATTCCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATTTGCAAAACATCAAATCCCATCTTTGCTCTTCCTCATTCCTT  1091

seq1  TTAATCCAAAGATTTCTTAAAGCAAGTTATATTAGGTAAGGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCAAAGATTTCTTAAAGCAAGTTATATTAGGTAAGGAATTC  1137


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