BAC Information

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BAC

Clone NameB6Ng01-258N21
Chromosome1 (Build37)
Map Location 134,670,453 - 134,671,554
singlet/doubletsinglet
Overlap genenone
Upstream gene4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
Downstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258N21.bB6Ng01-258N21.g
ACCGA064196GA064197
length1,2401,096
definitionB6Ng01-258N21.b B6Ng01-258N21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcgagacacagtacacagttatgataaggtgaggaatgtgaact
ccttcaatagccacgcagggacacagagaaaaatgaattatagctgtgaa
ttagttaaactgctttgactcctggcaggtcctgcacacactgcacctac
ctaagagctctggattcacgagtgaaagaaaggcaaacacatccaaaaca
gctaattttgatgtgccttgactagcttaatggctgggcatttctaaacc
tccctgaggccagcacacattttcctccagtattcctggcttaacaactt
ctaaatctgtattttattttttgctgccctgttatcttctgggcagcctc
ccctccacccccacctccctatagggccgctttccctttccatctacatt
gctggatgctttctctcctgcagctcttaaatctgatttcttctctagag
tcacggcgattctcctcttcccctctccctcggccacttgctcaggtaac
ctaaaagtcccaccccatctccctgcccagctattggctgacagcaattc
tttattactaatcgaagccagctgggggcagggaccctagggtctagaag
cggcttatgggagccaaattaagacaaagcattagaaccaattcccaaca
tctcaccctttctgcccacatttttaaaaaggctcttttctcagacacaa
attgagcataaccataacaattttgtaaattacaaagtgtgatatataat
taatatccagtccatcatatttgtcaattagataaagtactccactattt
atcctgacttaaagagcttacaatttttttaaaagatttatttattatat
gtaagtacattattgctgtcttcagacaccccagaagagggcatcagatc
tcattatggatggttgtgagccaccatgtggttgctgggatttgaactca
ggacctttgcaagagcagtcagtgctcttaactgaagagccatctctcta
gcccaacagttaaattttataccctaaattatggtctgactttaacttga
attaccatctgaaaccatcctttctgtatcatcttctcatgttaaacaac
cttggatttgcctattgagaactataatcatcctttccaccctgtcagaa
gtccagatgaccttaaattaacctgaggattagaagtccaaaacatatgg
ctcttaaccttaaacatattgtgcgacgaaggacagctac
gaattctctgcactttgtcaattccaggtggtagatatacagatatttat
tgggttcatttccagtgctctttctctgtgtatgaactagttcataatct
tgtcatttaaaaaaaaaaaagcaaaagaggctctcgttcttggggctatg
tggagaataggggcctcaagggtctagaaaagactctttaatgggagttc
ccacagacatggtgggatggtatagataaaggccttggcagtggacagga
aagacatgggctacctccaaagggtggcttcacacttggcaacctgctgg
gggagggcggaagagtggaaggctttgggcttaggatggtgtaggtgagg
cagggttgctaggcagaataggaagtaactgatgcctgctctgaagccca
tgggttgttttccatctgtgtttaaagccaaactgaagaatggacaggga
gctaaagtgggtaaagagaagaccatttcagaagagtgtggtatgagaag
aaacctaaggaggagcccaggagaagctcagaaacagggagtgtggcaag
tgtggcctctctaaaaggctccccctttgtagagccaactgccttttact
tctgatcctaagtttctcagtgaacctcacatttgcaggatgtcaaaaga
aatggtgttggcaccgttctactctctgacaaataaacgcctggcagcca
cctaaaggagggacgaaagggttcatctcatttaaggtttcagacctcac
cagtccatcacgagggtagggagtaggggacattgcctgcaggggtggct
gagtcaggaacagccagaacttgggagaatatgaatgtggtagtctacca
gaatgcaggtgagaacccaagatgggttcagactgatctacctcggctac
cttcctctagtgacctgcttccactacctagacctcatggccttagtgcc
acagggtttgctacacagaatagaaatagccgacactggaaggtcagtga
gatggctgtgggtaaattgggcttgcggccagctgaccacttgagtttgg
attcctagagcacttaatcaaaacaggaagttgattcctgcaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134670453_134671554
seq2: B6Ng01-258N21.g_70_1165

seq1  GAATTCTCTGCACTTTGTCAATTCCAGGTGGTAGATATACAGATATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCACTTTGTCAATTCCAGGTGGTAGATATACAGATATTTAT  50

seq1  TGGGTTCATTTCCAGTGCTCTTTCTCTGTGTATGAACTAGTTCATAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCATTTCCAGTGCTCTTTCTCTGTGTATGAACTAGTTCATAATCT  100

seq1  TGTCATTTAAAAAAAAAAAAGCAAAAGAGGCTCTCGTTCTTGGGGCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTAAAAAAAAAAAAGCAAAAGAGGCTCTCGTTCTTGGGGCTATG  150

seq1  TGGAGAATAGGGGCCTCAAGGGTCTAGAAAAGACTCTTTAATGGGAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATAGGGGCCTCAAGGGTCTAGAAAAGACTCTTTAATGGGAGTTC  200

seq1  CCACAGACATGGTGGGATGGTATAGATAAAGGCCTTGGCAGTGGACAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACATGGTGGGATGGTATAGATAAAGGCCTTGGCAGTGGACAGGA  250

seq1  AAGACATGGGCTACCTCCAAAGGGTGGCTTCACACTTGGCAACCTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGGGCTACCTCCAAAGGGTGGCTTCACACTTGGCAACCTGCTGG  300

seq1  GGGAGGGCGGAAGAGTGGAAGGCTTTGGGCTTAGGATGGTGTAGGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCGGAAGAGTGGAAGGCTTTGGGCTTAGGATGGTGTAGGTGAGG  350

seq1  CAGGGTTGCTAGGCAGAATAGGAAGTAACTGATGCCTGCTCTGAAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGCTAGGCAGAATAGGAAGTAACTGATGCCTGCTCTGAAGCCCA  400

seq1  TGGGTTGTTTTCCATCTGTGTTTAAAGCCAAACTGAAGAATGGACAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTTTTCCATCTGTGTTTAAAGCCAAACTGAAGAATGGACAGGGA  450

seq1  GCTAAAGTGGGTAAAGAGAAGACCATTTCAGAAGAGTGTGGTATGAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGTGGGTAAAGAGAAGACCATTTCAGAAGAGTGTGGTATGAGAAG  500

seq1  AAACCTAAGGAGGAGCCCAGGAGAAGCTCAGAAACAGGGAGTGTGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAGGAGGAGCCCAGGAGAAGCTCAGAAACAGGGAGTGTGGCAAG  550

seq1  TGTGGCCTCTCTAAAAGGCTCCCCCTTTGTAGAGCCAACTGCCTTTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCTCTAAAAGGCTCCCCCTTTGTAGAGCCAACTGCCTTTTACT  600

seq1  TCTGATCCTAAGTTTCTCAGTGAACCTCACATTTGCAGGATGTCAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCTAAGTTTCTCAGTGAACCTCACATTTGCAGGATGTCAAAAGA  650

seq1  AATGGTGTTGGCACCGTTCTACTCTCTGACAAATAAACGCCTGGCAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTTGGCACCGTTCTACTCTCTGACAAATAAACGCCTGGCAGCCA  700

seq1  CCTAAAGGAGGGACGAAAGGGTTCATCTCATTTAAGGTTTCAGACCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGGAGGGACGAAAGGGTTCATCTCATTTAAGGTTTCAGACCTCAC  750

seq1  CAGTCCATCACGAGGGTAGGGAGTAGGGGACATTGCCTGCAGGGGTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATCACGAGGGTAGGGAGTAGGGGACATTGCCTGCAGGGGTGGCT  800

seq1  GAGTCAGGAACAGCCAGAACTTGGGAGAATATGAATGTGGTAGTCTACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGAACAGCCAGAACTTGGGAGAATATGAATGTGGTAGTCTACCA  850

seq1  GAATGCAGGTGAGAACCCAAGATGGGTTCAGACTGATCTACCTCGGCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGGTGAGAACCCAAGATGGGTTCAGACTGATCTACCTCGGCTAC  900

seq1  CTTCCTCTAGTGACCTGCTTCCACCTACCTAGACCTCATGGCCTAAGTGC  950
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  CTTCCTCTAGTGACCTGCTTCCA-CTACCTAGACCTCATGGCCTTAGTGC  949

seq1  CACAGGG-TTGCTACACAGAATAGGAAATAGCCGACACCTGGAGGGTCAG  999
      ||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
seq2  CACAGGGTTTGCTACACAGAATA-GAAATAGCCGACA-CTGGAAGGTCAG  997

seq1  TGAGATGGCTTGGTGGGTAAA-TGTGCTTGCGGCCCAGCCTGACAACCTG  1048
      ||||||||||  ||||||||| || |||||||| |||| ||||| || ||
seq2  TGAGATGGCT--GTGGGTAAATTGGGCTTGCGG-CCAG-CTGACCACTTG  1043

seq1  AGTTTGATTCCCCAGAGCACCTATATCAAAAACAGAAG-TGATTCCCCGC  1097
      ||||||  | || ||||||| || |||||||   |||| ||||| || ||
seq2  AGTTTGGATTCCTAGAGCACTTA-ATCAAAACAGGAAGTTGATT-CCTGC  1091

seq1  AATTG  1102
      |||||
seq2  AATTG  1096