BAC Information

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BAC

Clone NameB6Ng01-259E02
Chromosome1 (Build37)
Map Location 56,842,697 - 56,995,207
singlet/doubletdoublet
Overlap geneSatb2
Upstream gene9130227L01Rik, Hsfy2
Downstream geneEG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259E02.bB6Ng01-259E02.g
ACCGA064484GA064485
length282531
definitionB6Ng01-259E02.b B6Ng01-259E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,842,697 - 56,842,978)(56,994,673 - 56,995,207)
sequence
tttgcctcctcccagctgcagtatgaccaccagacaaagcactcagaggc
agcctggacatcaacgtgacttcaggcagcagccagatcatggacatgaa
tgtggctttggtggtaacatgggccatagacagcagagacaccagtgatg
gctgcagtaggaccttggacccagacttggccctccattgcacttgctgg
aattcttgactctcagctggtgacagacttcaaccaaactcagaagtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

actgtgtagtagacggttgggggagtccccatgttccccatctggtatta
aggctttggcttctggagacaaagtacttcaccagtacaaaattgaaagt
tttaagtaggttttgagggctaaaaatgaaatgatatggacaacgcaaag
attaaagttcttttttctgaataaaatatgttacctttgtgggctaactt
ctgttggaaatcagataaatgttgcattgttaaaattagttgatgttaag
ctatggcttagttcttatgaaaacattaacataataaggcttgttagtaa
tatatgtatattatacatacatatacatgcacgtaggtatgtacatgtgt
gcttgtgtgtgtgtgtgtgtgtgtgtatgaatatgttttggtctttcagt
gagcccataacttgaatggtagcagccaggcccagcactcttcctgtctc
tgggaatgggtgccatctactctcatggtcttcctgtagttacctattgt
atcagtttattttgttttggtttttcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56842697_56842978
seq2: B6Ng01-259E02.b_50_331

seq1  TTTGCCTCCTCCCAGCTGCAGTATGACCACCAGACAAAGCACTCAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCCTCCCAGCTGCAGTATGACCACCAGACAAAGCACTCAGAGGC  50

seq1  AGCCTGGACATCAACGTGACTTCAGGCAGCAGCCAGATCATGGACATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGACATCAACGTGACTTCAGGCAGCAGCCAGATCATGGACATGAA  100

seq1  TGTGGCTTTGGTGGTAACATGGGCCATAGACAGCAGAGACACCAGTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTGGTGGTAACATGGGCCATAGACAGCAGAGACACCAGTGATG  150

seq1  GCTGCAGTAGGACCTTGGACCCAGACTTGGCCCTCCATTGCACTTGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGTAGGACCTTGGACCCAGACTTGGCCCTCCATTGCACTTGCTGG  200

seq1  AATTCTTGACTCTCAGCTGGTGACAGACTTCAACCAAACTCAGAAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGACTCTCAGCTGGTGACAGACTTCAACCAAACTCAGAAGTGTG  250

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  282
      ||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  282


seq1: chr1_56994673_56995207
seq2: B6Ng01-259E02.g_66_601 (reverse)

seq1  AAAAG-AAAACCAAAACTAAATAAACTGATACAATAGGTAACTACAGGAA  49
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAACCAAAACAAAATAAACTGATACAATAGGTAACTACAGGAA  50

seq1  GACCATGAGAGTAGATGGCACCCATTCCCAGAGACAGGAAGAGTGCTGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAGAGTAGATGGCACCCATTCCCAGAGACAGGAAGAGTGCTGGG  100

seq1  CCTGGCTGCTACCATTCAAGTTCTGGGCTCACTGAAAGACCAAAACATAT  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTGGCTGCTACCATTCAAGTTATGGGCTCACTGAAAGACCAAAACATAT  150

seq1  TCATACACACACACACACACACACACAAGCACACATGTACATACCTACGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACACACACACACACACACACAAGCACACATGTACATACCTACGT  200

seq1  GCATGTATATGTATGTATAATATACATATATTACTAACAAGCCTTATTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATATGTATGTATAATATACATATATTACTAACAAGCCTTATTAT  250

seq1  GTTAATGTTTTCATAAGAACTAAGCCATAGCTTAACATCAACTAATTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTTTTCATAAGAACTAAGCCATAGCTTAACATCAACTAATTTTA  300

seq1  ACAATGCAACATTTATCTGATTTCCAACAGAAGTTAGCCCACAAAGGTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAACATTTATCTGATTTCCAACAGAAGTTAGCCCACAAAGGTAA  350

seq1  CATATTTTATTCAGAAAAAAGAACTTTAATCTTTGCGTTGTCCATATCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTATTCAGAAAAAAGAACTTTAATCTTTGCGTTGTCCATATCAT  400

seq1  TTCATTTTTAGCCCTCAAAACCTACTTAAAACTTTCAATTTTGTACTGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTAGCCCTCAAAACCTACTTAAAACTTTCAATTTTGTACTGGT  450

seq1  GAAGTACTTTGTCTCCAGAAGCCAAAGCCTTAATACCAGATGGGGAACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACTTTGTCTCCAGAAGCCAAAGCCTTAATACCAGATGGGGAACAT  500

seq1  GGGGACTCCCCCAACCGTCTACTACACAGTGAATTC  535
      ||||||||||||||||||||||||||||||||||||
seq2  GGGGACTCCCCCAACCGTCTACTACACAGTGAATTC  536


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