BAC Information

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BAC

Clone NameB6Ng01-259E06
Chromosome1 (Build37)
Map Location 8,196,582 - 8,354,792
singlet/doubletdoublet
Overlap geneSntg1
Upstream geneLOC665063, LOC665069, LOC100039408
Downstream geneLOC100039474, LOC620444, EG665007, LOC665103, LOC100039464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259E06.bB6Ng01-259E06.g
ACCGA064490GA064491
length1,1941,157
definitionB6Ng01-259E06.b B6Ng01-259E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,353,583 - 8,354,792)(8,196,582 - 8,197,742)
sequence
gaattcatcagtctcctgcaatctcttctcattatctgttcattcttata
atccagaataaagcccagtgtgataaagatatacaaactaattgaagtct
taatcagcatcaaattattgtgaaatactgaacaaggagggtaaaataat
tagaaacattaatcttacataaaatgcttaaatatttatatgtttggaaa
gcctgaaaaacaaatattattttcaatgtaatagaactattttgagaaat
attgctttaatatttgtttcaatgacattcaaaattattgttcttctaaa
ggaaaatagaacatatacacagagagaaacacaaaaatacacagatacac
aggaatattagtgggatggaaggagaggacttggtagggatttcacagag
gaaagaaaagggaagaatgaatcatatgattgtaatttagttaattatta
gttagaacaaaatacattttagataattatgacaaaataaaaatctttct
tagtggaatacttttagaaactacaataatgaaatgaaaatatttaacac
tttcagaaatgtcactaaaataaactaactgtgggctataaaatggagaa
agacaactgttgagacactaattgaatgctattatgttactcttgcaaaa
ccaaagagaaaccactaacgtctgtcaattttcttaagcagcattttgac
atagtataatctcttctaatagtctggattgtataaattgcaaacatcag
gaatagtatataaaacagttgtagttattcatcatacaccacaaacatat
aactatataacagaaaatatgtcattaacttttgttgtttacatgtgggt
tatcctcattgcaataacaaataatctgcatatcatcttcactaagcatg
taaatctattaatcaaccttcagtcttcttggcattataatgtgtctatc
atagcattgtattttcgtgcattccatatccttgattccaaatgttgtta
cacataaatatgacacttgttgacaattttgtgagaaatatttttcccct
gatcttatttttcttttcttcagagtggattttcaataattggctgtctc
actgtatcattcatttttggctgcaagttagcttgtttggacctctgttt
tagtatcagctgtcatactgcctgctgtcagactctgtgcttct

gaattcagccaggctttggaatgggaagactggacaaaggacagatcccc
aggggagaggtaagtacagcaggaggcaggctggggacagtgctcctaca
cctggctgtggggacctagagagcaatctctgtgcggtggccagactagc
caggatggaaagccagtttggaagcaagttttggccagagaggcttggaa
gtagactggccacaggaaccaggacaagactgacacttggggctggccac
gagggtattcaagactgcagatgctggtgcctagctggaccattaaaaaa
aaaaaaaaaaaaaaaaaaactacacgttacacacttagtttctaccatgt
ggttttgattatttcattgatgtgtatattgactggttttgtgtcagctt
gacataatctggagttatctatcccagggaaaggaacctcagttgaggaa
atgcctccatgagatccagctgtatggcattttctcaattaatgttcaac
aggggtgagctcacctcattgtgaatggtgccattcctgggctggtagtt
ctgggttctataagaaggcaagctgatgaagccaagggaagcaatctagt
aagcagcacaactccatggcctctgcatcagcttctgcctcctgtttcct
gccttgtgtaagttcgtgtcctgactttctttggtgataaaccacaatgt
aaaagtataagatgaataaactttccctcctccaacagccccctcctccc
tcaccttgcttttagttcatggtgtttcattgcagcaacagacaccctga
ctaaagacactatgactattttcccacgagctctctgcatgtcactacac
tgggctctgttctgtgataactgatgattttgccatacgcttggaaatag
ttttaccatagtcaagattttgaagagatgcaagatgtctctcagagctg
aagaggtcaccaccattctagtacactttgcttttgattcatttccactc
tactggaaaacatccagtgggtggaaacactcctcttttcctttatagct
gcctgaacaggagattacatttactttttcatgaattcacatcttttacg
agtatttaatttttacatgcatgtatgtgctctgcctacaggtatgctgt
actgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_8353583_8354792
seq2: B6Ng01-259E06.b_44_1237 (reverse)

seq1  AGAAGCAGAG---CTGACAGCA-GCAGTAGTGGCAGCCTGATTACCTAAA  46
      ||||||| ||   ||||||||| |||||| || ||| |||| |||   ||
seq2  AGAAGCACAGAGTCTGACAGCAGGCAGTA-TGACAG-CTGA-TAC--TAA  45

seq1  AACAGAGGGTCCAAACAAGCTACTTTGGCAGCAAAAAATGAATGAATACA  96
      |||||| |||||||||||||||  || ||||| ||||||||||| |||||
seq2  AACAGA-GGTCCAAACAAGCTAACTT-GCAGCCAAAAATGAATG-ATACA  92

seq1  GTGAAGAACAGCAAATAAATTTGAAAATTCCAACTCCTGAAAGGAAAAGA  146
      ||||   ||||| ||| |  ||||||||  | ||| |||||  |||||||
seq2  GTGA--GACAGCCAATTA--TTGAAAAT--CCACT-CTGAA--GAAAAGA  133

seq1  AAAAT-AGATCAGGGGAAAAATAATTTCTTCACAAAATTGTCAACAAGTG  195
      ||||| |||||||||||||||| ||||| |||||||||||||||||||| 
seq2  AAAATAAGATCAGGGGAAAAAT-ATTTC-TCACAAAATTGTCAACAAGT-  180

seq1  GTCATATTTATGTGTAACAAACATTTGGAATCAAGGATATGGAATGCACG  245
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTCATATTTATGTGTAAC-AACATTTGGAATCAAGGATATGGAATGCACG  229

seq1  AAAATACAATGCTATGATAGACACATTATAATGCCAAGAAGACTGAAGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAATGCTATGATAGACACATTATAATGCCAAGAAGACTGAAGGT  279

seq1  TGATTAATAGATTTACATGCTTAGTGAAGATGATATGCAGATTATTTGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATAGATTTACATGCTTAGTGAAGATGATATGCAGATTATTTGTT  329

seq1  ATTGCAATGAGGATAACCCACATGTAAACAACAAAAGTTAATGACATATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATGAGGATAACCCACATGTAAACAACAAAAGTTAATGACATATT  379

seq1  TTCTGTTATATAGTTATATGTTTGTGGTGTATGATGAATAACTACAACTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTATATAGTTATATGTTTGTGGTGTATGATGAATAACTACAACTG  429

seq1  TTTTATATACTATTCCTGATGTTTGCAATTTATACAATCCAGACTATTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATACTATTCCTGATGTTTGCAATTTATACAATCCAGACTATTAG  479

seq1  AAGAGATTATACTATGTCAAAATGCTGCTTAAGAAAATTGACAGACGTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTATACTATGTCAAAATGCTGCTTAAGAAAATTGACAGACGTTA  529

seq1  GTGGTTTCTCTTTGGTTTTGCAAGAGTAACATAATAGCATTCAATTAGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCTCTTTGGTTTTGCAAGAGTAACATAATAGCATTCAATTAGTG  579

seq1  TCTCAACAGTTGTCTTTCTCCATTTTATAGCCCACAGTTAGTTTATTTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAGTTGTCTTTCTCCATTTTATAGCCCACAGTTAGTTTATTTTA  629

seq1  GTGACATTTCTGAAAGTGTTAAATATTTTCATTTCATTATTGTAGTTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTCTGAAAGTGTTAAATATTTTCATTTCATTATTGTAGTTTCT  679

seq1  AAAAGTATTCCACTAAGAAAGATTTTTATTTTGTCATAATTATCTAAAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATTCCACTAAGAAAGATTTTTATTTTGTCATAATTATCTAAAAT  729

seq1  GTATTTTGTTCTAACTAATAATTAACTAAATTACAATCATATGATTCATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTTCTAACTAATAATTAACTAAATTACAATCATATGATTCATT  779

seq1  CTTCCCTTTTCTTTCCTCTGTGAAATCCCTACCAAGTCCTCTCCTTCCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTTTCTTTCCTCTGTGAAATCCCTACCAAGTCCTCTCCTTCCAT  829

seq1  CCCACTAATATTCCTGTGTATCTGTGTATTTTTGTGTTTCTCTCTGTGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAATATTCCTGTGTATCTGTGTATTTTTGTGTTTCTCTCTGTGTA  879

seq1  TATGTTCTATTTTCCTTTAGAAGAACAATAATTTTGAATGTCATTGAAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTATTTTCCTTTAGAAGAACAATAATTTTGAATGTCATTGAAAC  929

seq1  AAATATTAAAGCAATATTTCTCAAAATAGTTCTATTACATTGAAAATAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAAGCAATATTTCTCAAAATAGTTCTATTACATTGAAAATAAT  979

seq1  ATTTGTTTTTCAGGCTTTCCAAACATATAAATATTTAAGCATTTTATGTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTTCAGGCTTTCCAAACATATAAATATTTAAGCATTTTATGTA  1029

seq1  AGATTAATGTTTCTAATTATTTTACCCTCCTTGTTCAGTATTTCACAATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATGTTTCTAATTATTTTACCCTCCTTGTTCAGTATTTCACAATA  1079

seq1  ATTTGATGCTGATTAAGACTTCAATTAGTTTGTATATCTTTATCACACTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGCTGATTAAGACTTCAATTAGTTTGTATATCTTTATCACACTG  1129

seq1  GGCTTTATTCTGGATTATAAGAATGAACAGATAATGAGAAGAGATTGCAG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATTCTGGATTATAAGAATGAACAGATAATGAGAAGAGATTGCAG  1179

seq1  GAGACTGATGAATTC  1210
      |||||||||||||||
seq2  GAGACTGATGAATTC  1194


seq1: chr1_8196582_8197742
seq2: B6Ng01-259E06.g_67_1223

seq1  GAATTCAGCCAGGCTTTGGAATGGGAAGACTGGACAAAGGACAGATCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCAGGCTTTGGAATGGGAAGACTGGACAAAGGACAGATCCCC  50

seq1  AGGGGAGAGGTAAGTACAGCAGGAGGCAGGCTGGGGACAGTGCTCCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAGGTAAGTACAGCAGGAGGCAGGCTGGGGACAGTGCTCCTACA  100

seq1  CCTGGCTGTGGGGACCTAGAGAGCAATCTCTGTGCGGTGGCCAGACTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTGGGGACCTAGAGAGCAATCTCTGTGCGGTGGCCAGACTAGC  150

seq1  CAGGATGGAAAGCCAGTTTGGAAGCAAGTTTTGGCCAGAGAGGCTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGAAAGCCAGTTTGGAAGCAAGTTTTGGCCAGAGAGGCTTGGAA  200

seq1  GTAGACTGGCCACAGGAACCAGGACAAGACTGACACTTGGGGCTGGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTGGCCACAGGAACCAGGACAAGACTGACACTTGGGGCTGGCCAC  250

seq1  GAGGGTATTCAAGACTGCAGATGCTGGTGCCTAGCTGGACCATTAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTATTCAAGACTGCAGATGCTGGTGCCTAGCTGGACCATTAAAAAA  300

seq1  AAAAAAAAAAAAAAAAAAACTACACGTTACACACTTAGTTTCTACCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAACTACACGTTACACACTTAGTTTCTACCATGT  350

seq1  GGTTTTGATTATTTCATTGATGTGTATATTGACTGGTTTTGTGTCAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGATTATTTCATTGATGTGTATATTGACTGGTTTTGTGTCAGCTT  400

seq1  GACATAATCTGGAGTTATCTATCCCAGGGAAAGGAACCTCAGTTGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATCTGGAGTTATCTATCCCAGGGAAAGGAACCTCAGTTGAGGAA  450

seq1  ATGCCTCCATGAGATCCAGCTGTATGGCATTTTCTCAATTAATGTTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCATGAGATCCAGCTGTATGGCATTTTCTCAATTAATGTTCAAC  500

seq1  AGGGGTGAGCTCACCTCATTGTGAATGGTGCCATTCCTGGGCTGGTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAGCTCACCTCATTGTGAATGGTGCCATTCCTGGGCTGGTAGTT  550

seq1  CTGGGTTCTATAAGAAGGCAAGCTGATGAAGCCAAGGGAAGCAATCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCTATAAGAAGGCAAGCTGATGAAGCCAAGGGAAGCAATCTAGT  600

seq1  AAGCAGCACAACTCCATGGCCTCTGCATCAGCTTCTGCCTCCTGTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCACAACTCCATGGCCTCTGCATCAGCTTCTGCCTCCTGTTTCCT  650

seq1  GCCTTGTGTAAGTTCGTGTCCTGACTTTCTTTGGTGATAAACCACAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGTAAGTTCGTGTCCTGACTTTCTTTGGTGATAAACCACAATGT  700

seq1  AAAAGTATAAGATGAATAAACTTTCCCTCCTCCAACAGCCCCCTCCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATAAGATGAATAAACTTTCCCTCCTCCAACAGCCCCCTCCTCCC  750

seq1  TCACCTTGCTTTTAGTTCATGGTGTTTCATTGCAGCAACAGACACCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGCTTTTAGTTCATGGTGTTTCATTGCAGCAACAGACACCCTGA  800

seq1  CT-AAGACACTATGACTATTTTCCCACGAGCTCTCTGCATGTCACTACAC  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACACTATGACTATTTTCCCACGAGCTCTCTGCATGTCACTACAC  850

seq1  TGGGCTCTGTTCTGTGATAACTGATGATTTTGCCATACGCTTGGAAATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTGTTCTGTGATAACTGATGATTTTGCCATACGCTTGGAAATAG  900

seq1  TTTTACCATAGTCAAGATTTTGAAGAGATGCAAGATGTCTCTCAGAGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCATAGTCAAGATTTTGAAGAGATGCAAGATGTCTCTCAGAGCTG  950

seq1  AAGAGGTCA-CACCATTCTAGTACACTTTGCTTTTGATTTCATTTCCACT  998
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  AAGAGGTCACCACCATTCTAGTACACTTTGCTTTTGA-TTCATTTCCACT  999

seq1  CTACTGGAAAACATCCAGTGGGTGGAAACACTCCTCTTTTCCTTTATAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGAAAACATCCAGTGGGTGGAAACACTCCTCTTTTCCTTTATAGC  1049

seq1  TGCCTGAACA-GAGATAACA-TTACTTTTTCATGATTTCAACAAACCTTT  1096
      |||||||||| ||||| ||| |||||||||||||| ||   || | ||||
seq2  TGCCTGAACAGGAGATTACATTTACTTTTTCATGAATT---CACATCTTT  1096

seq1  TAAGGAATTATTT-ATTTTTACTATGCATGTATGTGCTCTGCCTACATGT  1145
      || |  | ||||| |||||||| |||||||||||||||||||||||| ||
seq2  TACG--AGTATTTAATTTTTAC-ATGCATGTATGTGCTCTGCCTACAGGT  1143

seq1  ATGCTGTGTACTGCAT  1161
      ||||  ||||||||||
seq2  ATGC--TGTACTGCAT  1157


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