BAC Information

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BAC

Clone NameB6Ng01-259G15
Chromosome1 (Build37)
Map Location 20,027,627 - 20,162,877
singlet/doubletdoublet
Overlap genePkhd1
Upstream geneLOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259G15.bB6Ng01-259G15.g
ACCGA064600GA064601
length1,1261,115
definitionB6Ng01-259G15.b B6Ng01-259G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,161,741 - 20,162,877)(20,027,627 - 20,028,758)
sequence
gaattcagtgcttccctctcagcactgcttatctacgctccttgtgactg
aaggcttcttgttctgccagagggctttttgagtttgtagtgatggacaa
gggggtaatttacttttagtcattgcttgtgactttcttttacacaggta
tgttgtacctgggggaacattagtaattcttgaagcttaaaaatattctc
ttaagtctactgatttttttcctccttttcaatttcttctttatgcacct
catcatttttccctctcatattcttggcctcttttaaaaatccactgaag
ccagaaggtggtggcgcacacctttaatcccagcacctgggaggcagcgg
caggcagatttctgagttcgaggccagcctggtctacaaagtgagttcca
ggagagtcagggctatacagagaaaccctgtctaaaaaaaaaaaaaaaag
aaagaaagaaagaaaggaaggaaggaaggaaggaagaaagaaaggaagaa
aggaagaaagaaagaaagaaagaaaaagaaaaagaaaaagaaaaagaaaa
agaaaaagaaaaagaaaaagaaaaagaaagatttaaaaatccactgagtc
ctcttggtgttaacagttgtcttagtcagggtttctattcctgcacaaac
atcatgaccaagaagcagttggggagcaaagggtttattcagcttacatt
tccacattgctgttcatcactgaaagaagtcaggactggaattcaagcag
gtcaggaagcaggagctgatgcagaggccatggagggatgttctttaccg
gcttgcttcccctggcttgatctcttatagaaccagcccagagatggcac
catccacaatgggacctccccccttgatcactaattgagaaaatgccttg
cagttggatttccccaactgaagctcctttctctgtgataactctaccct
gtgtcaagttgacacaaaactagtcagtacaccagtatagcagattttat
atctgtaaagtaaaagaagaaataaagaagaaaatacttaaaaagatggt
attttttttctgtctaattttgatgataaatctaatttggtggaaagacc
tcaagcttcgtcaacatgtagactgc

gaattcacaaaagccaagacagaacatcaattcaaagtgtccatcaacaa
agtagttaataatgaagatgtaggatagatgcacgatgggatgtttttca
gccatgtaaacaaaaccctgatatttttggcaatatagctggatttaggg
gagtttcggtgcacatgccaagcatagaaagaataatgtcagatgttacc
actcaaagacggggagtaaaatcattgaatatagagaagggaaacagaag
atgtgacaagccagtgaggagaagagagacgggagatacaagaagctctg
atagtggacatcaaaactaggtgatgtacaaggaatatgttaaagctctt
caggttattgtgtagactaagcacacaatgaatgcttacatactttataa
agagctaggagaaaggtaagcaggatggtacacatctataaacccaggac
ggcacatacctgcaatcccaaaatggcacacacctgtaatacgaggatga
cacaaacccattatcctatcagttagcaagaggtgaaggctttatgaaca
ggatctcaagctcactctggtctgagtaagaccctgtctcagtagaagca
caaaccaattagatctaaaagagaatacctctaattttctcaacacaaaa
gtttatgtcagagtaaaatggtaattacaccaatttagacattgcaacta
tatagtgtatgtacatgtatatacatatgtatatgatgtatatttatgta
tacatgtatatatgtatacatatatatgcatttacataaataggtatcac
tgtatactgcagaattatatacaattattagatgttaatttaaagtcaat
caatcaatgaaagaggaatagttcagaaataaggtaaagtcttctagtgg
tacaacatactgaaaggaaatgtggtagatttttcccatgtgaatgttgc
acaatttgatggtaaagttcctactagtaacctattataacttgagatat
ttgtatacaaaagttacactatttaattttcagcaaattgcttgctgtga
gcattccccacatgtgctttggtctgcttcagtggtccagatgtccagct
tgcagagacttgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_20161741_20162877
seq2: B6Ng01-259G15.b_46_1171 (reverse)

seq1  GCAGTCCTACATGTTGACCGAGCTTGA-GTCTTTTCCCACCAAAATTTAG  49
      ||||| ||||||||||||  ||||||| ||||||  ||||||||  ||||
seq2  GCAGT-CTACATGTTGACGAAGCTTGAGGTCTTT--CCACCAAA--TTAG  45

seq1  AATTTATCATCAAAATTAGACAAGAAAAAAATTACCATCTTTTT-AGTAT  98
       |||||||||||||||||||| ||||||||| |||||||||||| |||||
seq2  -ATTTATCATCAAAATTAGAC-AGAAAAAAAATACCATCTTTTTAAGTAT  93

seq1  TTTTCCTTTTCTTTATTTCTTCTTTTTACTTTACAGATATAAAATCTTGC  148
      ||    | |||||||||||||| ||||||||||||||||||||||| |||
seq2  TT----TCTTCTTTATTTCTTC-TTTTACTTTACAGATATAAAATC-TGC  137

seq1  TATACTGGTGTACTGACTAGTTTTGTGTCAACTTGACACAGGGTAGAGTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGTGTACTGACTAGTTTTGTGTCAACTTGACACAGGGTAGAGTT  187

seq1  ATCACAGAGAAAGGAGCTTCAGTTGGGGAAATCCAACTGCAAGGCATTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAGAAAGGAGCTTCAGTTGGGGAAATCCAACTGCAAGGCATTTT  237

seq1  CTCAATTAGTGATCAAGGGGGGAGGTCCCATTGTGGATGGTGCCATCTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTAGTGATCAAGGGGGGAGGTCCCATTGTGGATGGTGCCATCTCT  287

seq1  GGGCTGGTTCTATAAGAGATCAAGCCAGGGGAAGCAAGCCGGTAAAGAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTTCTATAAGAGATCAAGCCAGGGGAAGCAAGCCGGTAAAGAAC  337

seq1  ATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAATT  387

seq1  CCAGTCCTGACTTCTTTCAGTGATGAACAGCAATGTGGAAATGTAAGCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTGACTTCTTTCAGTGATGAACAGCAATGTGGAAATGTAAGCTG  437

seq1  AATAAACCCTTTGCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCTTTGCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGG  487

seq1  AATAGAAACCCTGACTAAGACAACTGTTAACACCAAGAGGACTCAGTGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACCCTGACTAAGACAACTGTTAACACCAAGAGGACTCAGTGGA  537

seq1  TTTTTAAATCTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATCTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTC  587

seq1  TTTTTCTTTTTCTTTTTCTTTCTTTCTTTCTTTCTTCCTTTCTTCCTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTCTTTTTCTTTCTTTCTTTCTTTCTTCCTTTCTTCCTTTC  637

seq1  TTTCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTTTTTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTTTTTTTT  687

seq1  TTTTTTAGACAGGGTTTCTCTGTATAGCCCTGACTCTCCTGGAACTCACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGACAGGGTTTCTCTGTATAGCCCTGACTCTCCTGGAACTCACT  737

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCGCTGCCTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCGCTGCCTCC  787

seq1  CAGGTGCTGGGATTAAAGGTGTGCGCCACCACCTTCTGGCTTCAGTGGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTGGGATTAAAGGTGTGCGCCACCACCTTCTGGCTTCAGTGGAT  837

seq1  TTTTAAAAGAGGCCAAGAATATGAGAGGGAAAAATGATGAGGTGCATAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGAGGCCAAGAATATGAGAGGGAAAAATGATGAGGTGCATAAA  887

seq1  GAAGAAATTGAAAAGGAGGAAAAAAATCAGTAGACTTAAGAGAATATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATTGAAAAGGAGGAAAAAAATCAGTAGACTTAAGAGAATATTTT  937

seq1  TAAGCTTCAAGAATTACTAATGTTCCCCCAGGTACAACATACCTGTGTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCAAGAATTACTAATGTTCCCCCAGGTACAACATACCTGTGTAA  987

seq1  AAGAAAGTCACAAGCAATGACTAAAAGTAAATTACCCCCTTGTCCATCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTCACAAGCAATGACTAAAAGTAAATTACCCCCTTGTCCATCAC  1037

seq1  TACAAACTCAAAAAGCCCTCTGGCAGAACAAGAAGCCTTCAGTCACAAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTCAAAAAGCCCTCTGGCAGAACAAGAAGCCTTCAGTCACAAGG  1087

seq1  AGCGTAGATAAGCAGTGCTGAGAGGGAAGCACTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAGATAAGCAGTGCTGAGAGGGAAGCACTGAATTC  1126


seq1: chr1_20027627_20028758
seq2: B6Ng01-259G15.g_66_1180

seq1  GAATTCACAAAAGCCAAGACAGAACATCAATTCAAAGTGTCCATCAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAAGCCAAGACAGAACATCAATTCAAAGTGTCCATCAACAA  50

seq1  AGTAGTTAATAATGAAGATGTAGGATAGATGCACGATGGGATGTTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTAATAATGAAGATGTAGGATAGATGCACGATGGGATGTTTTTCA  100

seq1  GCCATGTAAACAAAACCCTGATATTTTTGGCAATATAGCTGGATTTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTAAACAAAACCCTGATATTTTTGGCAATATAGCTGGATTTAGGG  150

seq1  GAGTTTCGGTGCACATGCCAAGCATAGAAAGAATAATGTCAGATGTTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCGGTGCACATGCCAAGCATAGAAAGAATAATGTCAGATGTTACC  200

seq1  ACTCAAAGACGGGGAGTAAAATCATTGAATATAGAGAAGGGAAACAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGACGGGGAGTAAAATCATTGAATATAGAGAAGGGAAACAGAAG  250

seq1  ATGTGACAAGCCAGTGAGGAGAAGAGAGACGGGAGATACAAGAAGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACAAGCCAGTGAGGAGAAGAGAGACGGGAGATACAAGAAGCTCTG  300

seq1  ATAGTGGACATCAAAACTAGGTGATGTACAAGGAATATGTTAAAGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGACATCAAAACTAGGTGATGTACAAGGAATATGTTAAAGCTCTT  350

seq1  CAGGTTATTGTGTAGACTAAGCACACAATGAATGCTTACATACTTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTATTGTGTAGACTAAGCACACAATGAATGCTTACATACTTTATAA  400

seq1  AGAGCTAGGAGAAAGGTAAGCAGGATGGTACACATCTATAAACCCAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGGAGAAAGGTAAGCAGGATGGTACACATCTATAAACCCAGGAC  450

seq1  GGCACATACCTGCAATCCCAAAATGGCACACACCTGTAATACGAGGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATACCTGCAATCCCAAAATGGCACACACCTGTAATACGAGGATGA  500

seq1  CACAAACCCATTATCCTATCAGTTAGCAAGAGGTGAAGGCTTTATGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCCATTATCCTATCAGTTAGCAAGAGGTGAAGGCTTTATGAACA  550

seq1  GGATCTCAAGCTCACTCTGGTCTGAGTAAGACCCTGTCTCAGTAGAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCAAGCTCACTCTGGTCTGAGTAAGACCCTGTCTCAGTAGAAGCA  600

seq1  CAAACCAATTAGATCTAAAAGAGAATACCTCTAATTTTCTCAACACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAATTAGATCTAAAAGAGAATACCTCTAATTTTCTCAACACAAAA  650

seq1  GTTTATGTCAGAGTAAAATGGTAATTACACCAATTTAGACATTGCAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTCAGAGTAAAATGGTAATTACACCAATTTAGACATTGCAACTA  700

seq1  TATAGTGTATGTACATGTATATACATATGTATATGATGTATATTTATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTATGTACATGTATATACATATGTATATGATGTATATTTATGTA  750

seq1  TACATGTATATATGTATACATATATATGCATTTACATAAATAGGTATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATATATGTATACATATATATGCATTTACATAAATAGGTATCAC  800

seq1  TGTATACTGCAGAATTATATACAATTATTAGATGTTAATTTAAAGTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTGCAGAATTATATACAATTATTAGATGTTAATTTAAAGTCAAT  850

seq1  CAATCAATGAAAGAGGAATAGTTCAGGAAATAAGGTAAAGTCTTCTAGTG  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAATCAATGAAAGAGGAATAGTTCA-GAAATAAGGTAAAGTCTTCTAGTG  899

seq1  GTACAACATACTGAAAGGAAATGTGGTAGATTTTTCCCATGTGAATGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACATACTGAAAGGAAATGTGGTAGATTTTTCCCATGTGAATGTTG  949

seq1  CACAATTTGATGGTTAAAGTTCCTACTAGTAACCTATTTATAACTTGAGA  1000
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  CACAATTTGATGG-TAAAGTTCCTACTAGTAACCTA-TTATAACTTGAGA  997

seq1  TATTTGTTATACAAAAGTTTACACTATTTAATATTTCAGCAAATTGCTTG  1050
      |||||| |||||||||| |||||||||||||| |||||||||||||||||
seq2  TATTTG-TATACAAAAG-TTACACTATTTAAT-TTTCAGCAAATTGCTTG  1044

seq1  CCTGTGGAAGCCATTCCCCAACATGGTGGCTTTGTCTGGCTTCAGTGGGT  1100
       |||||  || |||||||| |||| |||  || |||| |||||||| |||
seq2  -CTGTG--AG-CATTCCCC-ACAT-GTGCTTTGGTCT-GCTTCAGT-GGT  1086

seq1  GCAGATGTTCCCAGCCCTGCAGAGACTTGCTG  1132
       |||||||  |||| | |||||||||||||||
seq2  CCAGATGT--CCAG-CTTGCAGAGACTTGCTG  1115


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