BAC Information

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BAC

Clone NameB6Ng01-259H03
Chromosome1 (Build37)
Map Location 32,261,037 - 32,374,138
singlet/doubletdoublet
Overlap geneKhdrbs2
Upstream gene4931428L18Rik, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056, LOC100041238
Downstream geneEG408191, EG633498, LOC213711, LOC100040828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259H03.bB6Ng01-259H03.g
ACCGA064624GA064625
length1,1011,076
definitionB6Ng01-259H03.b B6Ng01-259H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,261,037 - 32,262,142)(32,373,058 - 32,374,138)
sequence
gaattcctgaactcagttcccagagtccatgtaggttctatacaactatt
gctaaaaggcatctgatattcttttctggcttccatgaaaactgcactca
tgtcagatatatataattttaaaatataattattagagaaaggtcaaaga
aaggtggaaaagacatttggcaagtatttagactccaggaggaaccccga
gtatcattgtaatagttattatgaagtacattatttataaagactattgt
tcatttaaaaatatatttcattattttatttccctttgtactcttgttta
tactacttctggatgtcacttttattcatatgtttgataattttttaaag
gcaagtgttcctggatatcaagcagcttttaagtaatacatctttgcagc
tttccttaagaggatgggtaataagtagaggcactttagacagagcaagt
gagcaagtgaagggagggtaagcagagggaaggggagaagcctttaaaat
attctcaacaaaagaagtatttgaattgtattaatttatgatcattatgt
aaaaatttgcagagaagcatcttatcaacccagttggctcaagtgttgtt
tctccaggaggatcagatagagaatacagttaatgctttattgaggtgca
taattacatgaaaacttacattatatatatataatctcccctagtttaaa
taatggacacagtgttaataacaggccttgcaggaatacaggtttagaca
tggcagcatgaaattaaaatctaatctgttgcttcaaaaatccctctggc
ggctagagagatggctcagcggttaataggaaaggctgttcttccagagg
tcctcagttcaatttccagtaaccacatggtggctcacaaccatctatag
tgggatcagttgccctcttctgtcagatgctcttttttgtcatgcagaca
tacatgcaaatagagcagtcatatacataaataagtatatctttaaaaat
cccctgggtattttgggatgcataaacaaagtcagtgtcaatcccattct
gtttcttcagagataccctgtacatatgctctttaagtatggttttggga
g

gaattctttaaatgtagaattaagcaatgaaacctaaaatcccatactct
gattggtgtcttaacatgaaaatcaaaactaagaacagtgtatttttgtc
acaggaaactaatttacagtgggagaaaatggaagtaattagaggatatt
agatactagagatgaagtgcttcttgatatttgagtcaccttcgccaaca
ttcttggggccttaatttatcctctattccttctgaatatgaataaagat
tttcttgaaatatgtgaggtccctgagataacatctattaattctaatgt
aagctgaattgatattatttgcaatcaacaaaatgtggaaaaatacagat
tcaacagcatcaattaattattcagacccctgcattttctaccttttgat
agcttcataccatcaaatttctttgttatactgggaaagtaggaatagat
acaatgaagagaaatgcccaaatattaaattaaccatggaataaatgcca
tgacaaataggatgcatttttcattcttacatgtcgagaaaacataaacc
aaatgtattctaatttctatgtggttatgttgttccactcagagggatct
taagtgtcactggctaaggaagaccatgaatgcttaatgtccttacttgg
tatatattagcataatgctttgctaatgggatgggtgatgggggaaaaca
tgaaaaaatgagggtttagtgtctacatctaccaaagtcattgttctgtc
tttgtttcccaagaggatgctgcatataaaaaccaaagatattatttttt
aaagattattcaatgatactgaagggtgtgagctatacggctccatcaaa
gatagtaacaaaaggttccctgttcctaggtgacataaaaaatgaaggag
tcagttcagagaaaacatcacaacactgctctggggatgctggatatagg
cagcccccagggagatcagcatttcctcaaagaacgatagagagcaaggg
aattctgagagttgcctgattggattctctgaaacataaagaggtcatgt
ggcaaaaaaaaataaattattagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_32261037_32262142
seq2: B6Ng01-259H03.b_46_1146

seq1  GAATTCCTGAACTCAGTTCCCAGAGTCCATGTAGGTTCTATACAACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAACTCAGTTCCCAGAGTCCATGTAGGTTCTATACAACTATT  50

seq1  GCTAAAAGGCATCTGATATTCTTTTCTGGCTTCCATGAAAACTGCACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGGCATCTGATATTCTTTTCTGGCTTCCATGAAAACTGCACTCA  100

seq1  TGTCAGATATATATAATTTTAAAATATAATTATTAGAGAAAGGTCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATATATATAATTTTAAAATATAATTATTAGAGAAAGGTCAAAGA  150

seq1  AAGGTGGAAAAGACATTTGGCAAGTATTTAGACTCCAGGAGGAACCCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGAAAAGACATTTGGCAAGTATTTAGACTCCAGGAGGAACCCCGA  200

seq1  GTATCATTGTAATAGTTATTATGAAGTACATTATTTATAAAGACTATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTGTAATAGTTATTATGAAGTACATTATTTATAAAGACTATTGT  250

seq1  TCATTTAAAAATATATTTCATTATTTTATTTCCCTTTGTACTCTTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAAAATATATTTCATTATTTTATTTCCCTTTGTACTCTTGTTTA  300

seq1  TACTACTTCTGGATGTCACTTTTATTCATATGTTTGATAATTTTTTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTTCTGGATGTCACTTTTATTCATATGTTTGATAATTTTTTAAAG  350

seq1  GCAAGTGTTCCTGGATATCAAGCAGCTTTTAAGTAATACATCTTTGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTTCCTGGATATCAAGCAGCTTTTAAGTAATACATCTTTGCAGC  400

seq1  TTTCCTTAAGAGGATGGGTAATAAGTAGAGGCACTTTAGACAGAGCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAGAGGATGGGTAATAAGTAGAGGCACTTTAGACAGAGCAAGT  450

seq1  GAGCAAGTGAAGGGAGGGTAAGCAGAGGGAAGGGGAGAAGCCTTTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGTGAAGGGAGGGTAAGCAGAGGGAAGGGGAGAAGCCTTTAAAAT  500

seq1  ATTCTCAACAAAAGAAGTATTTGAATTGTATTAATTTATGATCATTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAACAAAAGAAGTATTTGAATTGTATTAATTTATGATCATTATGT  550

seq1  AAAAATTTGCAGAGAAGCATCTTATCAACCCAGTTGGCTCAAGTGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTGCAGAGAAGCATCTTATCAACCCAGTTGGCTCAAGTGTTGTT  600

seq1  TCTCCAGGAGGATCAGATAGAGAATACAGTTAATGCTTTATTGAGGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGAGGATCAGATAGAGAATACAGTTAATGCTTTATTGAGGTGCA  650

seq1  TAATTACATGAAAACTTACATTATATATATATAATCTCCCCTAGTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACATGAAAACTTACATTATATATATATAATCTCCCCTAGTTTAAA  700

seq1  TAATGGACACAGTGTTAATAACAGGCCTTGCAGGAAATACAGGTTTAGAC  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAATGGACACAGTGTTAATAACAGGCCTTGCAGG-AATACAGGTTTAGAC  749

seq1  ATGGCAGCATGAAATTAAAATCTAATCTGTTGCTTCAAAAATCCCTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCATGAAATTAAAATCTAATCTGTTGCTTCAAAAATCCCTCTGG  799

seq1  CGGCTAGAGAGATGGCTCAGCGGTTAATAGGAAAGGCTGTTCTTCCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTAGAGAGATGGCTCAGCGGTTAATAGGAAAGGCTGTTCTTCCAGAG  849

seq1  GTCCTCAGTTCAATTTCCAGTAACCACATGGTGGCTCACAACCATCTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGTTCAATTTCCAGTAACCACATGGTGGCTCACAACCATCTATA  899

seq1  GTGGGATCAGTTGCCCTCTTCTGTCAGATGCTCTTTTTTGTCATGCAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATCAGTTGCCCTCTTCTGTCAGATGCTCTTTTTTGTCATGCAGAC  949

seq1  ATACATGCAAATAGAGCAGTCATATACATAAATAAGTATATCTTTAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATACATGCAAATAGAGCAGTCATATACATAAATAAGTATATCTTT-AAAA  998

seq1  ATCCCCCTGGTATTTT-GGATGCATAAAACAAAAGTCAGTGTCAATCCCA  1049
      ||||||  |||||||| |||||||||||   |||||||||||||||||||
seq2  ATCCCCTGGGTATTTTGGGATGCATAAA--CAAAGTCAGTGTCAATCCCA  1046

seq1  TTCTGTTTCTTCAGAGATACCCTTGTTACATATGCTCTTTAAGTATGGTT  1099
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  TTCTGTTTCTTCAGAGATACCCT--GTACATATGCTCTTTAAGTATGGTT  1094

seq1  TTGGGAG  1106
      |||||||
seq2  TTGGGAG  1101


seq1: chr1_32373058_32374138
seq2: B6Ng01-259H03.g_66_1141 (reverse)

seq1  ATACTAAT-ATATATTTTTTTTTGCCACATGAACCTCTTTTATGTTTCAA  49
      |||||||| || ||||||||||||||||||| ||||| |||||||||| |
seq2  ATACTAATAATTTATTTTTTTTTGCCACATG-ACCTC-TTTATGTTTC-A  47

seq1  GAGAATCCAATTCAGGCAACCTTCTCAGAATTCCCTTGCTCTCTATCGTT  99
      |||||||||| |||||||||  ||||||||||||||||||||||||||||
seq2  GAGAATCCAA-TCAGGCAAC--TCTCAGAATTCCCTTGCTCTCTATCGTT  94

seq1  CCTTTGAGGAAATGCTGATCTCCCTGGGGGCTGCCTATATCCAGCATCCC  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTTTGAGGAAATGCTGATCTCCCTGGGGGCTGCCTATATCCAGCATCCC  143

seq1  CAGAGCAGTGTTGTGATGTTTTCTCTGAACTGACTCCTTCATTTTTTATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGTGTTGTGATGTTTTCTCTGAACTGACTCCTTCATTTTTTATG  193

seq1  TCACCTAGGAACAGGGAACCTTTTGTTACTATCTTTGATGGAGCCGTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAGGAACAGGGAACCTTTTGTTACTATCTTTGATGGAGCCGTATA  243

seq1  GCTCACA-CCTTCAGTATCATTGAATAATCTTTAAAAAATAATATCTTTG  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACCCTTCAGTATCATTGAATAATCTTTAAAAAATAATATCTTTG  293

seq1  GTTTTTATATGCAGCATCCTCTTGGGAAACAAAGACAGAACAATGACTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATATGCAGCATCCTCTTGGGAAACAAAGACAGAACAATGACTTT  343

seq1  GGTAGATGTAGACACTAAACCCTCATTTTTTCATGTTTTCCCCCATCACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGTAGACACTAAACCCTCATTTTTTCATGTTTTCCCCCATCACC  393

seq1  CATCCCATTAGCAAAGCATTATGCTAATATATACCAAGTAAGGACATTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATTAGCAAAGCATTATGCTAATATATACCAAGTAAGGACATTAA  443

seq1  GCATTCATGGTCTTCCTTAGCCAGTGACACTTAAGATCCCTCTGAGTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATGGTCTTCCTTAGCCAGTGACACTTAAGATCCCTCTGAGTGGA  493

seq1  ACAACATAACCACATAGAAATTAGAATACATTTGGTTTATGTTTTCTCGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATAACCACATAGAAATTAGAATACATTTGGTTTATGTTTTCTCGA  543

seq1  CATGTAAGAATGAAAAATGCATCCTATTTGTCATGGCATTTATTCCATGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGAATGAAAAATGCATCCTATTTGTCATGGCATTTATTCCATGG  593

seq1  TTAATTTAATATTTGGGCATTTCTCTTCATTGTATCTATTCCTACTTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAATATTTGGGCATTTCTCTTCATTGTATCTATTCCTACTTTCC  643

seq1  CAGTATAACAAAGAAATTTGATGGTATGAAGCTATCAAAAGGTAGAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAACAAAGAAATTTGATGGTATGAAGCTATCAAAAGGTAGAAAAT  693

seq1  GCAGGGGTCTGAATAATTAATTGATGCTGTTGAATCTGTATTTTTCCACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGTCTGAATAATTAATTGATGCTGTTGAATCTGTATTTTTCCACA  743

seq1  TTTTGTTGATTGCAAATAATATCAATTCAGCTTACATTAGAATTAATAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGATTGCAAATAATATCAATTCAGCTTACATTAGAATTAATAGA  793

seq1  TGTTATCTCAGGGACCTCACATATTTCAAGAAAATCTTTATTCATATTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTCAGGGACCTCACATATTTCAAGAAAATCTTTATTCATATTCA  843

seq1  GAAGGAATAGAGGATAAATTAAGGCCCCAAGAATGTTGGCGAAGGTGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATAGAGGATAAATTAAGGCCCCAAGAATGTTGGCGAAGGTGACT  893

seq1  CAAATATCAAGAAGCACTTCATCTCTAGTATCTAATATCCTCTAATTACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCAAGAAGCACTTCATCTCTAGTATCTAATATCCTCTAATTACT  943

seq1  TCCATTTTCTCCCACTGTAAATTAGTTTCCTGTGACAAAAATACACTGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCTCCCACTGTAAATTAGTTTCCTGTGACAAAAATACACTGTT  993

seq1  CTTAGTTTTGATTTTCATGTTAAGACACCAATCAGAGTATGGGATTTTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTTGATTTTCATGTTAAGACACCAATCAGAGTATGGGATTTTAG  1043

seq1  GTTTCATTGCTTAATTCTACATTTAAAGAATTC  1081
      |||||||||||||||||||||||||||||||||
seq2  GTTTCATTGCTTAATTCTACATTTAAAGAATTC  1076


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