BAC Information

Click to search

BAC

Clone NameB6Ng01-259H17
Chromosome1 (Build37)
Map Location 184,022,177 - 184,023,268
singlet/doubletsinglet
Overlap genenone
Upstream geneFgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah
Downstream geneSrp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259H17.bB6Ng01-259H17.g
ACCGA064652GA064653
length1,2081,108
definitionB6Ng01-259H17.b B6Ng01-259H17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcctgtaggggccagagagaataaaacagggcgtcccccgatt
tctctctgtccctgggagagtttttaaatccatttttttctatctctttc
tttttttgcttgtaagaggtagcttgtcaaaccaagattaaaatctagaa
ttttctaacagcttttgcaagcatctaaaacttctaatttatttaatctg
agggcaaattttttagaaaacacacaatctctatacacaaaatgtctcaa
atagcctagaagtttaccatgctgaatcttttttgaagcaatcagtccac
acttagtcaaatattttatagccatctgcaaaacgctctctactttctgc
aaccaacaaaaatactatctatagaatgaattatatatgtttgaggagat
gacttaactttcaaataagccttttctacgaattttttgacacaatgtag
gattgggaaattgtaaataaggtaaaagtaagaagtgagctatattttga
cctttatgaagtctctttttatactttaaccataatttaaccataacttt
taattttacctaaagtatcagaatccaccacttgaagtttttcttataac
tggagctgtgtcctataatgagctctacagttcctgaatggggctaagag
attgcccctttagttttttgtcttacccgcctcttttgtgagctgagtcc
catctttatgggactttgacttgtaatcattcctccaaggttctctccac
cacagcctggacagagacctggagaaaaggcccttcttgtttcccgaggg
attcttacaatctttactcaggtgccccggttttttacaaccgaaacatg
cagttccatagttctctgtcttacccgcttcttttgtgagcagagtccca
tccttatgggactttggtttacattcacttctccagtgtttgtcacaacg
ctggaagggacctaaaggaatgctcttcttgtctcctgagagatttttac
aatcttctcaggtgttcccgggtttttacaccgaaaacatgtaattccat
cagtagcgcgatgtcttccttctttgctgcggcgtaaactagatcctgaa
ttacagcggtgaggcatctacacatgcttaaatataaatcttgtagaact
tgacttacgatggtgttcaggtctggcacacaaggtaatttaacgtattt
tctcccga
gaattcactttgctaacgagtgggtacggagcagctttgtgagccgggga
agtctggatacatgacgctttctgagcaattagtaagatgtgtgctgtta
aggaagggccctagtagacatctttgctggaggctaccctgcaaatggga
gtctgtagggcaagttgggaccagctgagactgtagtcaagaaagccaga
tgacctttctgcagctaatatgagattccttttagtggactaagatgtct
gcagaatgtgccccggaaactgattcctgctgagcttgcagtgatcaata
ccctcaggttagaagccaggtcatctttttccttctttgctgtttgccac
agccgctgttccaccctcgaatctaaagcaagaaagagcctgcatggact
ggaaagtcggctcctgtacaaagactaggactggggaaatgtctcactgt
gcttctactcaggtagatgcacacattcagtgtgcggtcctaggccttga
ccttggcagagagaggttctgggcaggggagcgtccctggcgactgtctc
tagggaaccagtctgactttgtcccttcctgattgggttctatccaggca
actggaagcctgctgcttctgctccttctaagactctgtttttgtttata
ttggagactgtgtagaaggaacagaaaagactcaaactagcttagcataa
aaggtacttggaggtggtgggggctggtgagatggctcagtgggaaagag
cactgactgctctttttgaaggtcctgagttcaaatcccagcaaccacat
gatggctcacaaacacccataatgagatctgatgcccttcttctggtgtg
tctgaagacagcagcagggtacttattcataataataaaataaatctttt
gggcagagtgagcggggctggaccagagcgagcaagagggtcttaaattt
ctattcccaacaaccaacatgaaggctcacagctacagtgccattcacat
ccataaaaaaaaaaaaaaaaaggattcttaggggaccaataagggttctt
ttggtaacacactaggcaaagacacttagatcctgtgtgttctggaaaaa
aaaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_184022177_184023268
seq2: B6Ng01-259H17.g_66_1173

seq1  GAATTCACTTTGCTAACGAGTGGGTACGGAGCAGCTTTGTGAGCCGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGCTAACGAGTGGGTACGGAGCAGCTTTGTGAGCCGGGGA  50

seq1  AGTCTGGATACATGACGCTTTCTGAGCAATTAGTAAGATGTGTGCTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGATACATGACGCTTTCTGAGCAATTAGTAAGATGTGTGCTGTTA  100

seq1  AGGAAGGGCCCTAGTAGACATCTTTGCTGGAGGCTACCCTGCAAATGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGCCCTAGTAGACATCTTTGCTGGAGGCTACCCTGCAAATGGGA  150

seq1  GTCTGTAGGGCAAGTTGGGACCAGCTGAGACTGTAGTCAAGAAAGCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGGGCAAGTTGGGACCAGCTGAGACTGTAGTCAAGAAAGCCAGA  200

seq1  TGACCTTTCTGCAGCTAATATGAGATTCCTTTTAGTGGACTAAGATGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTCTGCAGCTAATATGAGATTCCTTTTAGTGGACTAAGATGTCT  250

seq1  GCAGAATGTGCCCCGGAAACTGATTCCTGCTGAGCTTGCAGTGATCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGTGCCCCGGAAACTGATTCCTGCTGAGCTTGCAGTGATCAATA  300

seq1  CCCTCAGGTTAGAAGCCAGGTCATCTTTTTCCTTCTTTGCTGTTTGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGTTAGAAGCCAGGTCATCTTTTTCCTTCTTTGCTGTTTGCCAC  350

seq1  AGCCGCTGTTCCACCCTCGAATCTAAAGCAAGAAAGAGCCTGCATGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCTGTTCCACCCTCGAATCTAAAGCAAGAAAGAGCCTGCATGGACT  400

seq1  GGAAAGTCGGCTCCTGTACAAAGACTAGGACTGGGGAAATGTCTCACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCGGCTCCTGTACAAAGACTAGGACTGGGGAAATGTCTCACTGT  450

seq1  GCTTCTACTCAGGTAGATGCACACATTCAGTGTGCGGTCCTAGGCCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACTCAGGTAGATGCACACATTCAGTGTGCGGTCCTAGGCCTTGA  500

seq1  CCTTGGCAGAGAGAGGTTCTGGGCAGGGGAGCGTCCCTGGCGACTGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAGAGAGAGGTTCTGGGCAGGGGAGCGTCCCTGGCGACTGTCTC  550

seq1  TAGGGAACCAGTCTGACTTTGTCCCTTCCTGATTGGGTTCTATCCAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAACCAGTCTGACTTTGTCCCTTCCTGATTGGGTTCTATCCAGGCA  600

seq1  ACTGGAAGCCTGCTGCTTCTGCTCCTTCTAAGACTCTGTTTTTGTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGCCTGCTGCTTCTGCTCCTTCTAAGACTCTGTTTTTGTTTATA  650

seq1  TTGGAGACTGTGTAGAAGGAACAGAAAAGACTCAAACTAGCTTAGCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACTGTGTAGAAGGAACAGAAAAGACTCAAACTAGCTTAGCATAA  700

seq1  AAGGTACTTGGAGGTGGTGGGGGCTGGTGAGATGGCTCAGTGGGAAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACTTGGAGGTGGTGGGGGCTGGTGAGATGGCTCAGTGGGAAAGAG  750

seq1  CACTGACTGCTC-TTTTGAAGGTCCTGAGTTCAAATCCCAGCAACCACAT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACTGACTGCTCTTTTTGAAGGTCCTGAGTTCAAATCCCAGCAACCACAT  800

seq1  GATGGCTCACAAACACCCATAATGAGATCTGATGCCC-TCTTCTGGTGTG  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGGCTCACAAACACCCATAATGAGATCTGATGCCCTTCTTCTGGTGTG  850

seq1  TCTGAAGACAGCAGCAGGGTACTTATTCATAATAAT-AAATAAATCTTTG  897
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TCTGAAGACAGCAGCAGGGTACTTATTCATAATAATAAAATAAATCTTTT  900

seq1  GGCCAGAGTGAGCGGGGCT-GACCAGAGCGAGC-AGA-GGTCCTAAA-TT  943
      || |||||||||||||||| ||||||||||||| ||| |||| |||| ||
seq2  GGGCAGAGTGAGCGGGGCTGGACCAGAGCGAGCAAGAGGGTCTTAAATTT  950

seq1  CTATTCCCAACAACC-ACATGAAGGCTCACAGCTACAGTG-CATTCACAT  991
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  CTATTCCCAACAACCAACATGAAGGCTCACAGCTACAGTGCCATTCACAT  1000

seq1  CCATAAAAAAAAAAAAAAAAAGGTATCTTAGGGAACAAATAAGGGTTTCC  1041
      |||||||||||||||||||||||  |||||||| || ||||||||||  |
seq2  CCATAAAAAAAAAAAAAAAAAGGATTCTTAGGGGACCAATAAGGGTT--C  1048

seq1  TTTTTGT-ACACACTA-GCAAAGACAC-TAGA-CCTGTG---TCTG--AA  1082
      |||| || |||||||| |||||||||| |||| ||||||   ||||  ||
seq2  TTTTGGTAACACACTAGGCAAAGACACTTAGATCCTGTGTGTTCTGGAAA  1098

seq1  AAAAAATATA  1092
      ||||||||||
seq2  AAAAAATATA  1108