BAC Information

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BAC

Clone NameB6Ng01-259H20
Chromosome1 (Build37)
Map Location 114,785,744 - 114,939,953
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259H20.bB6Ng01-259H20.g
ACCGA064658GA064659
length1,2121,148
definitionB6Ng01-259H20.b B6Ng01-259H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,785,744 - 114,786,952)(114,938,789 - 114,939,953)
sequence
gaattcacaactttatttcaggttgtagtggaattcaattatttcataaa
gtgtagccatgcagcaaatgttgtgctcattttagaataattagcacatt
gatactgcttgtgtagttaaaaggaaatgtttaaatttccccattgtaag
cactttttgaagggtcactctgttctctaaagtgagaaatttttcattcc
aaaggaagctagtagctctatcttccctggatttaattttcctcctctta
tacttgaattaaaaacactaatgcctattctgacaagtcttaatcacagg
cctggaggaagtgaagactcctccatagatttgtttaaatgattcattta
ttgcaagttcctccttctagctcttttgaataattaaggatgagctaaag
agatgtaaaatctgtcacttatatgtcttcagttaacatgctcaccaaaa
ttgggcattctcacatgccttttcacaatctataaaagaaagagatgcct
gtggaataggaatgaactagcatttgcagtttctgaggcactagatggac
ttccaattttactttaaaaaaatttattttaactttaacactttttttat
tttttataaacatacaataaaatgtatgtgtttcaaggtagtcaccaggg
ccaaaagatggcatcagaacaaaaaattcaatgggaaaattacagttcat
ttcacaaaatttccaggttgtgtatagagtattagaaaaagaaacaggtg
aaatattctgctttgaagaaatagtaatccagggtgacacattgttttcc
tgaaaaagaacacaaaacaaacaaacaaaattaaactaaaatagaaggac
agctaatgggaatctggacaatctacagtcactgctgcattttgttgcta
agatccagtaaattgaattctgctatatattaccttaacatgtgagaaaa
accttcacaaagaacattttgctatatgactccatactgaacagaagaag
aaacatgaggaaaaatgtatgtgattggttttgacaatcgcttactgata
gtcagattaagtacaatcttttgttaggtttgatatatctctggaggata
actgagagatcttctgactttaacagggtcagtaaaggatagctaagaaa
tctgtgtggttcccctcaaatgaatgatactgttcacattcttgcactta
gtgaggaatttg
gaattctttatcttctctaattctcagattgtagtgcattataatgctaa
tggtttgctctagatttttctcatccatactatgagaagcttttatatgt
ggaactgaatagctaaattctctttccatggaagaaagtgtccctgcttc
acaaatctggattatttaaaatatcattgtttgaaaggcttagctttata
tatcacagcaattcattcattttcaaacatttatgcatgaggtagaagaa
ttataatttacaatactgtttgtaatttaaaatacattaaacccaaattc
taataaccttgtaattgaaatacatgctcttcaaaaaatgtagtatataa
ataagccataatattgctatatgactccaatacaaattcagaaatgatgg
ttattatgcttatttttagtttctggaattgcgtgaaatatacaatgttt
atgcttttcataactgtgataaaccaccttgaccaaaagaaactttgatg
aggaaatacttgcaaatccagatcacagtgcaagactgaatgcagccagg
gtagaagtttgggtagaaaggaggaacactttttgctgacttgtttgtac
aagttcatttattttttcctatgtagtgaaggaccacctactcagcaatg
gttctacttacagtaggctgtgtctttctgaatcagttaacaatcaaggc
aatcctcacatacaggctcacagtccaatccgatctgggtgatctcttga
tctgatctgggtcttcccaaatgactccagactgtgtcatgataaaaggg
aaacctaaattaggataggggtcgtagttgattgacattttgcattcttc
tgtattctccctgaaatggttagttcaatattttcagaaaattatcatat
tttttcagttaaaactttatttccttcttcaaaaatttggaatattgctc
aaggaagaaaaagaagataagggatgatttctggtacaggtaacggaaag
acctagaccatataccaccttctactgaatagaaagcatacattcagact
atccttcatgtagtgatgaaagcaaaacacaaagtcctgataccgaatag
cagtaaatctcatccagtgatgttcttgaccagtccagcactctacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114785744_114786952
seq2: B6Ng01-259H20.b_42_1253

seq1  GAATTCACAACTTTATTTCAGGTTGTAGTGGAATTCAATTATTTCATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTTTATTTCAGGTTGTAGTGGAATTCAATTATTTCATAAA  50

seq1  GTGTAGCCATGCAGCAAATGTTGTGCTCATTTTAGAATAATTAGCACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCATGCAGCAAATGTTGTGCTCATTTTAGAATAATTAGCACATT  100

seq1  GATACTGCTTGTGTAGTTAAAAGGAAATGTTTAAATTTCCCCATTGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGCTTGTGTAGTTAAAAGGAAATGTTTAAATTTCCCCATTGTAAG  150

seq1  CACTTTTTGAAGGGTCACTCTGTTCTCTAAAGTGAGAAATTTTTCATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTGAAGGGTCACTCTGTTCTCTAAAGTGAGAAATTTTTCATTCC  200

seq1  AAAGGAAGCTAGTAGCTCTATCTTCCCTGGATTTAATTTTCCTCCTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGCTAGTAGCTCTATCTTCCCTGGATTTAATTTTCCTCCTCTTA  250

seq1  TACTTGAATTAAAAACACTAATGCCTATTCTGACAAGTCTTAATCACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAATTAAAAACACTAATGCCTATTCTGACAAGTCTTAATCACAGG  300

seq1  CCTGGAGGAAGTGAAGACTCCTCCATAGATTTGTTTAAATGATTCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGAAGTGAAGACTCCTCCATAGATTTGTTTAAATGATTCATTTA  350

seq1  TTGCAAGTTCCTCCTTCTAGCTCTTTTGAATAATTAAGGATGAGCTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTTCCTCCTTCTAGCTCTTTTGAATAATTAAGGATGAGCTAAAG  400

seq1  AGATGTAAAATCTGTCACTTATATGTCTTCAGTTAACATGCTCACCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAAATCTGTCACTTATATGTCTTCAGTTAACATGCTCACCAAAA  450

seq1  TTGGGCATTCTCACATGCCTTTTCACAATCTATAAAAGAAAGAGATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATTCTCACATGCCTTTTCACAATCTATAAAAGAAAGAGATGCCT  500

seq1  GTGGAATAGGAATGAACTAGCATTTGCAGTTTCTGAGGCACTAGATGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATAGGAATGAACTAGCATTTGCAGTTTCTGAGGCACTAGATGGAC  550

seq1  TTCCAATTTTACTTTAAAAAAATTTATTTTAACTTTAACACTTTTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTTACTTTAAAAAAATTTATTTTAACTTTAACACTTTTTTTAT  600

seq1  TTTTTATAAACATACAATAAAATGTATGTGTTTCAAGGTAGTCACCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAAACATACAATAAAATGTATGTGTTTCAAGGTAGTCACCAGGG  650

seq1  CCAAAAGATGGCATCAGAACAAAAAATTCAATGGGAAAATTACAGTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGATGGCATCAGAACAAAAAATTCAATGGGAAAATTACAGTTCAT  700

seq1  TTCACAAAATTTCCAGGTTGTGTATAGAGTATTAGAAAAAGAAACAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAATTTCCAGGTTGTGTATAGAGTATTAGAAAAAGAAACAGGTG  750

seq1  AAATATTCTGCTTTGAAGAAATAGTAATCCAGGGTGACACATTGTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTGCTTTGAAGAAATAGTAATCCAGGGTGACACATTGTTTTCC  800

seq1  TGAAAAAGAACACAAAACAAACAAACAAAATTAAACTAAAATAGAAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGAACACAAAACAAACAAACAAAATTAAACTAAAATAGAAGGAC  850

seq1  AGCTAATGGGAATCTGGACAATCTACAGTCACTGCTGCATTTTGTTGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATGGGAATCTGGACAATCTACAGTCACTGCTGCATTTTGTTGCTA  900

seq1  AGATCCAGTAAATTGAATTCTGCTATATATTACCTTAACATGTGAGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGTAAATTGAATTCTGCTATATATTACCTTAACATGTGAGAAAA  950

seq1  ACCTTCACAAAGAACATTTTGCTATATGACTCCATACTGAACAGAAGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACAAAGAACATTTTGCTATATGACTCCATACTGAACAGAAGAAG  1000

seq1  AAACATGAGGAAAAATGTATGTGATTGGTTTTGAACAATCGCTTACTGAT  1050
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACATGAGGAAAAATGTATGTGATTGGTTTTG-ACAATCGCTTACTGAT  1049

seq1  AGTCAGATTAAGTACAAATCTTTGTTAGGTTTGGATAATAATCTCT-GAG  1099
      |||||||||||||||||   |||||||||||| ||||   |||||| |||
seq2  AGTCAGATTAAGTACAATCTTTTGTTAGGTTT-GATA--TATCTCTGGAG  1096

seq1  GATAACTGAGAGATC-TCTGACTTT-ACA-GGTCAGTAAAAGATAGCCAA  1146
      ||||||||||||||| ||||||||| ||| |||||||||| |||||| ||
seq2  GATAACTGAGAGATCTTCTGACTTTAACAGGGTCAGTAAAGGATAGCTAA  1146

seq1  AGAAAATCTGTGTG---TCCCTCACAATAGATGATACTG-TCACAT--CT  1190
         |||||||||||    |||||| |||  ||||||||| ||||||   |
seq2  --GAAATCTGTGTGGTTCCCCTCA-AATGAATGATACTGTTCACATTCTT  1193

seq1  GCACCTAGTGAGGAATTTG  1209
      |||| ||||||||||||||
seq2  GCACTTAGTGAGGAATTTG  1212

seq1: chr1_114938789_114939953
seq2: B6Ng01-259H20.g_65_1212 (reverse)

seq1  CTGTAGAGTAACTGAGACTGGTTCAAAGAAACATCACTTGGGAAGAGATA  50
      |||||||||  ||| |||||| ||||   |||||||||  ||| ||||| 
seq2  CTGTAGAGT-GCTG-GACTGG-TCAA--GAACATCACT--GGATGAGAT-  42

seq1  TTACTGCCTATCGGTAATCAGGAACTTTGTGTTTTTTGGTTTCATCCACC  100
      |||||||   ||||| |||||| ||||||||  ||||| |||||||   |
seq2  TTACTGCTATTCGGT-ATCAGG-ACTTTGTG--TTTTGCTTTCATC--AC  86

seq1  TACATGAAGGATATGTCTGAATGTATGCTTTCTATTCAGTAGAAGGTGGT  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACATGAAGGATA-GTCTGAATGTATGCTTTCTATTCAGTAGAAGGTGGT  135

seq1  ATATGGTCCTAGGTCTTTCCGTTACCTGTTACCAGAAATTCATCCCTTAT  200
      ||||||| |||||||||||||||||||| ||||||||| |||||||||||
seq2  ATATGGT-CTAGGTCTTTCCGTTACCTG-TACCAGAAA-TCATCCCTTAT  182

seq1  CTTCTTTTTCTTCCTTGAGCAATATTCCAAATTTTTGAAGAAGGAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTCTTCCTTGAGCAATATTCCAAATTTTTGAAGAAGGAAATAA  232

seq1  AGTTTTAACTGAAAAAATATGATAATTTTCTGAAAATATTGAACTAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAACTGAAAAAATATGATAATTTTCTGAAAATATTGAACTAACCA  282

seq1  TTTCAGGGAGAATACAGAAGAATGCAAAATGTCAATCAACTACGACCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGAGAATACAGAAGAATGCAAAATGTCAATCAACTACGACCCCT  332

seq1  ATCCTAA-TTAGGTTTCCCTTTTATCATGACACAGTCTGGAGTCATTTGG  399
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATTTAGGTTTCCCTTTTATCATGACACAGTCTGGAGTCATTTGG  382

seq1  GAAGACCCAGATCAGATCAAGAGATCACCCAGATCGGATTGGACTGTGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCAGATCAGATCAAGAGATCACCCAGATCGGATTGGACTGTGAG  432

seq1  CCTGTATGTGAGGATTGCCTTGATTGTTAACTGATTCAGAAAGACACAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGTGAGGATTGCCTTGATTGTTAACTGATTCAGAAAGACACAGC  482

seq1  CTACTGTAAGTAGAACCATTGCTGAGTAGGTGGTCCTTCACTACATAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTAAGTAGAACCATTGCTGAGTAGGTGGTCCTTCACTACATAGGA  532

seq1  AAAAATAAATGAACTTGTACAAACAAGTCAGCAAAAAGTGTTCCTCCTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATGAACTTGTACAAACAAGTCAGCAAAAAGTGTTCCTCCTTT  582

seq1  CTACCCAAACTTCTACCCTGGCTGCATTCAGTCTTGCACTGTGATCTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAAACTTCTACCCTGGCTGCATTCAGTCTTGCACTGTGATCTGGA  632

seq1  TTTGCAAGTATTTCCTCATCAAAGTTTCTTTTGGTCAAGGTGGTTTATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGTATTTCCTCATCAAAGTTTCTTTTGGTCAAGGTGGTTTATCA  682

seq1  CAGTTATGAAAAGCATAAACATTGTATATTTCACGCAATTCCAGAAACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGAAAAGCATAAACATTGTATATTTCACGCAATTCCAGAAACTA  732

seq1  AAAATAAGCATAATAACCATCATTTCTGAATTTGTATTGGAGTCATATAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGCATAATAACCATCATTTCTGAATTTGTATTGGAGTCATATAG  782

seq1  CAATATTATGGCTTATTTATATACTACATTTTTTGAAGAGCATGTATTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTATGGCTTATTTATATACTACATTTTTTGAAGAGCATGTATTTC  832

seq1  AATTACAAGGTTATTAGAATTTGGGTTTAATGTATTTTAAATTACAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAGGTTATTAGAATTTGGGTTTAATGTATTTTAAATTACAAACA  882

seq1  GTATTGTAAATTATAATTCTTCTACCTCATGCATAAATGTTTGAAAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTAAATTATAATTCTTCTACCTCATGCATAAATGTTTGAAAATGA  932

seq1  ATGAATTGCTGTGATATATAAAGCTAAGCCTTTCAAACAATGATATTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGCTGTGATATATAAAGCTAAGCCTTTCAAACAATGATATTTTA  982

seq1  AATAATCCAGATTTGTGAAGCAGGGACACTTTCTTCCATGGAAAGAGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCCAGATTTGTGAAGCAGGGACACTTTCTTCCATGGAAAGAGAAT  1032

seq1  TTAGCTATTCAGTTCCACATATAAAAGCTTCTCATAGTATGGATGAGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATTCAGTTCCACATATAAAAGCTTCTCATAGTATGGATGAGAAA  1082

seq1  AATCTAGAGCAAACCATTAGCATTATAATGCACTACAATCTGAGAATTAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAGCAAACCATTAGCATTATAATGCACTACAATCTGAGAATTAG  1132

seq1  AGAAGATAAAGAATTC  1165
      ||||||||||||||||
seq2  AGAAGATAAAGAATTC  1148