BAC Information

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BAC

Clone NameB6Ng01-259J24
Chromosome1 (Build37)
Map Location 50,085,404 - 50,086,468
singlet/doubletsinglet
Overlap genenone
Upstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259J24.bB6Ng01-259J24.g
ACCGA064759GA064760
length1,1391,068
definitionB6Ng01-259J24.b B6Ng01-259J24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataaattttcattttctaaattcctcagtttaggtattctctat
tgattttgttaccacattcaggtcttgaacactttgattcatttttctct
ttatacactatttcctggatttctttatgacatttactaatttgttcttt
gaagacttctatcatcttcatataggttgttctaaggtttcattgttggg
tttcaactgtgttgtaatattcaggtctgtggtaagatagattggcttta
ttaaagacatgttcgcttggcagttattgatatttttcttttacttattc
actttacatcccatccactggtcaccccctccaacagtcttttccctctc
tctcatcccctccctatccccttctcctcttagcaggtggggccccacag
gtatcccctaatcctgtcacttcaagtttctatgacactagatgtgtcct
ctccccctgagaaaaggcaaggcatctcagctaggaaaacatattccatg
tacaggcaacacatttatggatagccactgttccatttgttagacatcac
caagaagaccaagctgcacatctactccatatgtgcaggtccagaatggg
tatgttcttttgttggtggtttataatctgagagcttctgacgtaggtga
gttgacactgttgcatttcttgtggagttcctccagagtctgcaactcct
attcttcttcctgttctgccataagagtcctcaagtcccatccactcttt
ggctgtgggtgtctacacttgtctgagtcagctgctaggtggaggccctc
agagaacaacttgatcctgcatgaaaacataacagagtatacttattatg
tttttatacttctgtctaggcttctctaattggcttgattaaaatcctag
gtgacattttctgtgtttatcttcattgggttggtattagaaacttgggt
ttaagtttctatttagatttttcagattatgtgatgatggctggtaatcg
cctgtagaattttcattgaacctatagttatggccacttggcccaggtaa
atttgcgtctgggttgtgaggagcctggggatacagcaacaagtggaaga
gaagaatgctaaggagcagtgtgtgggtctggtggctct

gaattcttcagttatttaatttataaaactgatttcaattattataaatt
atgatttgcaagatatattcttttacaataaaatgaaaataaaccttttt
atttatttctttattgctagttatcagctatacaattacactttttccaa
tatgtaaggaactatactcaattaaataacattttcatgaaatatgtttt
aaaaacaattagatcttattctttaaaatatggtttttaaattagaccaa
gatgctgtttatgcaaaacagaggctgagaggattagaagaaaattatga
aatgttgacacctataaacagaaaacacctagatagtgttatatataaag
tggatgctcagtggtcattaactttctgaatattttaaaaaagagacatt
aaagtgaatgattaaccataatgacttgtcataaatgataacatgtaaat
gacttttgataaatgataacatgcaaaataatgcaatatagtgtatctaa
aagtattagattgtctgtctattgatgtatttcagtgtttttaaatttct
gatgtttctcttacttcttccatacctggccatcataccttgcaaagcag
aaataggaacccatcataagttcttgttagttcacaacatgattatagat
agtcttttgttttactatttagtactcagttttttatcagtaccgttcta
ggtaccaggttgcagtctacctcttagatgaatactgctaactactttaa
tacctcttttgagaagcaaaagattcatttcagtatgttttggcaatcaa
gatttaaaagaagtgatatgaatatagttatatttcataagacattgtga
atattgttcaataaatgaaaatacttggtaaatgaaaaatatgggcctgt
actgagaaccgtatacacactggagaaccttcttccttataaaatgtacc
tatgtgtatgtcttaaaatatgtgtatttttgtactcattgaagggttta
agttccagatcatacaaaaatatgagtgtttaagtacattgtaacgtaag
gtttagtattagtaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50085404_50086468
seq2: B6Ng01-259J24.g_65_1132

seq1  GAATTCTTCAGTTATTTAATTTATAAAACTGATTTCAATTATTATAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTATTTAATTTATAAAACTGATTTCAATTATTATAAATT  50

seq1  ATGATTTGCAAGATATATTCTTTTACAATAAAATGAAAATAAACCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGCAAGATATATTCTTTTACAATAAAATGAAAATAAACCTTTTT  100

seq1  ATTTATTTCTTTATTGCTAGTTATCAGCTATACAATTACACTTTTTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCTTTATTGCTAGTTATCAGCTATACAATTACACTTTTTCCAA  150

seq1  TATGTAAGGAACTATACTCAATTAAATAACATTTTCATGAAATATGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGGAACTATACTCAATTAAATAACATTTTCATGAAATATGTTTT  200

seq1  AAAAACAATTAGATCTTATTCTTTAAAATATGGTTTTTAAATTAGACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATTAGATCTTATTCTTTAAAATATGGTTTTTAAATTAGACCAA  250

seq1  GATGCTGTTTATGCAAAACAGAGGCTGAGAGGATTAGAAGAAAATTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTTTATGCAAAACAGAGGCTGAGAGGATTAGAAGAAAATTATGA  300

seq1  AATGTTGACACCTATAAACAGAAAACACCTAGATAGTGTTATATATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGACACCTATAAACAGAAAACACCTAGATAGTGTTATATATAAAG  350

seq1  TGGATGCTCAGTGGTCATTAACTTTCTGAATATTTTAAAAAAGAGACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCAGTGGTCATTAACTTTCTGAATATTTTAAAAAAGAGACATT  400

seq1  AAAGTGAATGATTAACCATAATGACTTGTCATAAATGATAACATGTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAATGATTAACCATAATGACTTGTCATAAATGATAACATGTAAAT  450

seq1  GACTTTTGATAAATGATAACATGCAAAATAATGCAATATAGTGTATCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGATAAATGATAACATGCAAAATAATGCAATATAGTGTATCTAA  500

seq1  AAGTATTAGATTGTCTGTCTATTGATGTATTTCAGTGTTTTTAAATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAGATTGTCTGTCTATTGATGTATTTCAGTGTTTTTAAATTTCT  550

seq1  GATGTTTCTCTTACTTCTTCCATACCTGGCCATCATACCTTGCAAAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCTCTTACTTCTTCCATACCTGGCCATCATACCTTGCAAAGCAG  600

seq1  AAATAGGAACCCATCATAAGTTCTTGTTAGTTCACAACATGATTATAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAACCCATCATAAGTTCTTGTTAGTTCACAACATGATTATAGAT  650

seq1  AGTCTTTTGTTTTACTATTTAGTACTCAGTTTTTTATCAGTACCGTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTGTTTTACTATTTAGTACTCAGTTTTTTATCAGTACCGTTCTA  700

seq1  GGTACCAGGTTGCAGTCTACCTCTTAGATGAATACTGCTAACTACTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCAGGTTGCAGTCTACCTCTTAGATGAATACTGCTAACTACTTTAA  750

seq1  TACCTCTTTTGAGAAGCAAAAGATTCATTTCAGTATGTTTTGGCAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTTTGAGAAGCAAAAGATTCATTTCAGTATGTTTTGGCAATCAA  800

seq1  GATTT-AAAGAAGTGATATGAATATAGTTATATTTCATAAGACATTGTGA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAAGAAGTGATATGAATATAGTTATATTTCATAAGACATTGTGA  850

seq1  ATATTGTTCAATAAATGAAAATACTTGGTAAATGAAAAATAT-GGCCTGT  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATATTGTTCAATAAATGAAAATACTTGGTAAATGAAAAATATGGGCCTGT  900

seq1  ACTGAGAACCGTATACACACTGGAGAA-CTTCTTCCTTATAAAATGTACC  947
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTGAGAACCGTATACACACTGGAGAACCTTCTTCCTTATAAAATGTACC  950

seq1  TATGTGTATGTCTTAAAATATGTGTATTTTTGTACTCATTGAGGGGTTTA  997
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  TATGTGTATGTCTTAAAATATGTGTATTTTTGTACTCATTGAAGGGTTT-  999

seq1  AAGTTCCAGATCATAC-AAAATATGAGTG-TTAAGTAACATTGTAACGTA  1045
      |||||||||||||||| |||||||||||| |||||| |||||||||||||
seq2  AAGTTCCAGATCATACAAAAATATGAGTGTTTAAGT-ACATTGTAACGTA  1048

seq1  AGGTTTAGTAATAGTAAAAT  1065
      |||||||||| |||||||||
seq2  AGGTTTAGTATTAGTAAAAT  1068


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