BAC Information

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BAC

Clone NameB6Ng01-259O24
Chromosome1 (Build37)
Map Location 143,319,365 - 143,320,498
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnt2, EG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259O24.bB6Ng01-259O24.g
ACCGA064990GA064991
length1,2111,108
definitionB6Ng01-259O24.b B6Ng01-259O24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacaaggaagttacctattcagtaactaattaatattatataag
acagagccaacagctcagggctagtctgcaagatgtttactaggacagaa
aggacagtctcatccaaatagggtttaccatgtgaaaatgtaggaaatcc
cactgagacatgtttctttattaggccctaagaatacaggcagaaatata
gagcataaataaattttatgcctcagcccagcctttcttttttatattaa
caacagggaggagatgtaaccaccccacaccagcctgaaatctggctgat
caggtttgactgttagcactaggagagcatcaggggtggagcctgctacc
ctatgggtctgccactcccactgctactacctgatgcctagctgttccgg
agccaacatgtggtcacctgcaactggactccaaggttgatttggcggga
atgggcccctcccctcttcttcataacctggtgctctgaatagtaaaatt
gagctttgatcagaacctttgttgtcttagctcctttctttctctcatcc
atctagttccctttctttcagctcaagtctgctgcttcagccataccccg
ttcctctcaagccgctggatggcacacaacagttagagagattgtataag
gatgtcaatcaaatagatcatttaatagtataaaagaaaactgagtcagt
ggtagatgaaatgtaaaataaggagtatatatttgccactgaccaaaata
ttttatagaaatttctattaaaatatgtaacaataatgtttaataactac
aaacaatatgaaataatgataaatatttttgtattaacatattttccatg
aatttgagaacaaaagaaagaggagggaaagaaaaactggtgaaaatttg
ttcttaaatgctcagtgtttactaataaaaaaaacctgttatatgtttca
gaaccttgcattgcacatacaaatgaactagaaagtaatgataatcaatt
tcactaattatagggggaaagaatagacaacaagagttgctctttggtga
taataaattgtgagctattgattattgtgttcttatgcttttattaaaag
gtggagattacctttggatttcaaattaacttctagagatagaacctgtc
tattctgtaagcttacttaaccttggattgcaaacacatgtgccataata
ataaagaggct

gaattccataagagcaaggtacctcaatgtttctagcataaatggatgag
ctataaatgaaaatttagatgttcagaaaaagaattaggcagagccaatg
actcaaatagtaaaatgttctcagagtaagttagaatattctacgacata
actttaaactctttccataaattcaagcagtaagttgaaacaaaccataa
ttattttagaaataatcagtgattaacttgatcactgattaaacttgatg
actagattcattctcaaagcaatatttataccagaaaatatttatatttt
tcttttagcacttaccatgttaaataattttctgatctattttaatatca
aaatttaacattatgaaattttgttacaataaccttttaatttaatttcc
aatttcatttttgaggatataatattactacagcatttctctcattcatt
tcatccctctaaatcatcccatttatcagtctaattctccttcaaattca
tggactctttttgtttcaactaatttttattgcacaaatatatgtatatt
agtaaacataacctgtttagtttgcatactgttacttgtatatacgtttt
catggatgaatgaaactgaaaaagaaattgttgtgtgattttttttttta
atcattgtccaggagaggtttaactaaatggaaaatggagctcacagata
tttctatatgttattcagggtgtggtacagaattaagaaactatagaagc
tgggcagtggtggtgaacacctttaatcccagcacttgggagccagagac
aggcagatttctgagttcgaggccagcctggtctacaaaatgagttccag
gacagccaggtacaggctatacagagaaaccctgacttgaaaaaaaatta
taggaaatattaatgcagaaatttgaaagaaaagtaaaagaagtaagcta
tttttatttactaatttatttttcatggtatttatttatttacatttcaa
attatctcatccagttctctctgcaagtccctacctactctcactgctct
ctgagggtgctctcacactctcaccacctcccacctcactggctaggatc
cccatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143319365_143320498
seq2: B6Ng01-259O24.g_66_1173

seq1  GAATTCCATAAGAGCAAGGTACCTCAATGTTTCTAGCATAAATGGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGAGCAAGGTACCTCAATGTTTCTAGCATAAATGGATGAG  50

seq1  CTATAAATGAAAATTTAGATGTTCAGAAAAAGAATTAGGCAGAGCCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATGAAAATTTAGATGTTCAGAAAAAGAATTAGGCAGAGCCAATG  100

seq1  ACTCAAATAGTAAAATGTTCTCAGAGTAAGTTAGAATATTCTACGACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATAGTAAAATGTTCTCAGAGTAAGTTAGAATATTCTACGACATA  150

seq1  ACTTTAAACTCTTTCCATAAATTCAAGCAGTAAGTTGAAACAAACCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAACTCTTTCCATAAATTCAAGCAGTAAGTTGAAACAAACCATAA  200

seq1  TTATTTTAGAAATAATCAGTGATTAACTTGATCACTGATTAAACTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGAAATAATCAGTGATTAACTTGATCACTGATTAAACTTGATG  250

seq1  ACTAGATTCATTCTCAAAGCAATATTTATACCAGAAAATATTTATATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTCATTCTCAAAGCAATATTTATACCAGAAAATATTTATATTTT  300

seq1  TCTTTTAGCACTTACCATGTTAAATAATTTTCTGATCTATTTTAATATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGCACTTACCATGTTAAATAATTTTCTGATCTATTTTAATATCA  350

seq1  AAATTTAACATTATGAAATTTTGTTACAATAACCTTTTAATTTAATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAACATTATGAAATTTTGTTACAATAACCTTTTAATTTAATTTCC  400

seq1  AATTTCATTTTTGAGGATATAATATTACTACAGCATTTCTCTCATTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTTTGAGGATATAATATTACTACAGCATTTCTCTCATTCATT  450

seq1  TCATCCCTCTAAATCATCCCATTTATCAGTCTAATTCTCCTTCAAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTCTAAATCATCCCATTTATCAGTCTAATTCTCCTTCAAATTCA  500

seq1  TGGACTCTTTTTGTTTCAACTAATTTTTATTGCACAAATATATGTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTTTTTGTTTCAACTAATTTTTATTGCACAAATATATGTATATT  550

seq1  AGTAAACATAACCTGTTTAGTTTGCATACTGTTACTTGTATATACGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACATAACCTGTTTAGTTTGCATACTGTTACTTGTATATACGTTTT  600

seq1  CATGGATGAATGAAACTGAAAAAGAAATTGTTGTGTGATTTTTTTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGAATGAAACTGAAAAAGAAATTGTTGTGTGATTTTTTTTTTTA  650

seq1  ATCATTGTCCAGGAGAGGTTTAACTAAATGGAAAATGGAGCTCACAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTCCAGGAGAGGTTTAACTAAATGGAAAATGGAGCTCACAGATA  700

seq1  TTTCTATATGTTATTCAGGGTGTGGTACAGAATTAAGAAACTATAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATGTTATTCAGGGTGTGGTACAGAATTAAGAAACTATAGAAGC  750

seq1  TGGGCAGTGGTGGTGAACACCTTTAATCCCAGCACTTGGGAGCCAGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTGGTGGTGAACACCTTTAATCCCAGCACTTGGGAGCCAGAGAC  800

seq1  AGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAATGAGTTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAATGAGTTCCAG  850

seq1  GACAGCCAGGTACAGGCTATACAGAGAAACCCTGACTTGAAAAAAAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGTACAGGCTATACAGAGAAACCCTGACTTGAAAAAAAATTA  900

seq1  TA-GAAATATTAATGCAGAAATTTGAAAGAAAAGTAAAAGAAGTAAGCTA  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATATTAATGCAGAAATTTGAAAGAAAAGTAAAAGAAGTAAGCTA  950

seq1  TTTTTTATTTTACTAATTTATTTTTTCATTGGTTATTTTATTTATTTACA  999
      |||||   |||||||||||| ||||||| ||||   ||||||||||||||
seq2  TTTTT--ATTTACTAATTTA-TTTTTCA-TGGT--ATTTATTTATTTACA  994

seq1  TTTCAAATTTATCCTCATTCCCAGTTTCTCCTCTGCAAAGTCCTTACCCT  1049
      ||||||| |||| |||||  |||| |||| |||||| |||||| ||||  
seq2  TTTCAAA-TTAT-CTCAT--CCAG-TTCT-CTCTGC-AAGTCCCTACC--  1035

seq1  TACCTCTTCACCTGCTTCTCTGAGGGTGCTCTCCACCCACCTCTCCAACC  1099
      || ||| ||| |||| |||||||||||||||| |||    |||||  |||
seq2  TA-CTC-TCA-CTGC-TCTCTGAGGGTGCTCT-CAC---ACTCTC--ACC  1075

seq1  A-CTCCCACCTCACTGCCCTAGGATTCCCCCATGCT  1134
      | ||||||||||||||  |||||||  |||||||||
seq2  ACCTCCCACCTCACTG-GCTAGGAT--CCCCATGCT  1108


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