BAC Information

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BAC

Clone NameB6Ng01-259P07
Chromosome1 (Build37)
Map Location 94,681,991 - 94,838,093
singlet/doubletdoublet
Overlap geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Downstream geneGpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259P07.bB6Ng01-259P07.g
ACCGA065004GA065005
length1,1461,120
definitionB6Ng01-259P07.b B6Ng01-259P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,681,991 - 94,683,139)(94,836,983 - 94,838,093)
sequence
gaattcaagtccttacaaaggaagaaaagcagccaaggagatagctctgt
ccattaagtccttgccttgtttcctcagacaccacccccaaatctgggca
tgatgatgcacatctgtaatcctagcactgtcaatgtggaaataggtgga
ttctcggggctcactaacctgcttgtcaaggtccaggccaatgagatact
ctgacaaaacaaacaaacaccagctatggctggagagatgactcagctca
gttgataaagtgaatgtcaagcaatcatgagaacctgagttcagattccc
agcactcacaggaaaagccaggcacggtggtgcacgcttgtaatccaggc
actgaagaatccgagatgagaggactcctgagctcactggacagttagtc
ttgcagaattcgtgtgctccaggatcattaagagacactatctaaaaaca
tggtggggagcaattgggaagatactcaaggctggcctctagcctacaca
gagagagggggcaggaggtagagatagcctctttgccccttacacaatga
cacatcacctatggaaaagttggccctcaatgtcatagaaaatgcagcat
ctgcttctgccttggttggatttcagggtcaaagaaggttataatgttca
tgagccattcggtctgtggatttggtacgacagccagaacaggcaaaggt
gagtgagcgggagcctggagaaggcggactgcttgaaggtcccacagcag
gagttcagggaagaccagactccagagtgtggagcatgctttgtcctcaa
gggctgcactccggcttaggcccagatacctccgggtcctatgcagagca
tctggaaactcagggccaggtcctatctcaaggcagccagagcctttagc
cttgtttccacgatcgaatacgcaggtgcaccggtgtcctgcccagcaca
ctccatgaacatggtccttgggcccgctcaatttaactatatccccagtg
acctccactatgtcccttccaggccctctgctcctccccttgaccccttg
acttcaccccagctcactcactcagaccccatcatgggtcctgttacagt
atcttaatctaaggtcacctgggacacgtgccctgccttacttgct
gaattccacgtatacatcgccatgtctgtccgactcacggcctcgcgctg
tgcagtacaagctctacagactgaagcgctgccctagtgctatttctgaa
cctaagtgatagcgtacaaatattcttttttttttttttttttttttttg
gtttttcgagacagggtttctctgtgtagccctggctatcccggaactca
ctctgtagaccaggctggccttgaactcagaaatctgcctgcctctgcct
cccaagtgctgggattaaaggcgtgtgccaccaccgccagctgcataaaa
atattcttaaatgtgtatagaaaattatatcagaaagatatggccagaca
tgtaataagtgacaatggtctcaacacttgactacctaagttttaagcaa
gtctgaaactcaaaacaaaaacaaaaacaaaattccaaaaaccaaaacaa
caatagaaaaaacaaaacacagcaaaaaaaaaaaaaaaatcggaactatt
taacattactggaggatcaagaaaaccacagcaggtccggcagtggaggg
agagattccagtttatgtaaaagtggtatacaacaaaatcagaaaaggct
gcacacattcagggaaaaactcaagaagtacactagaaggttctaagtgg
tttacagttctatctaggtgagcttttcttttttctttattttgtacaca
aacttctcctcatgaaccttaatatatcaggaagataaaaatggctttgg
actttgcttggtaagcaactggggcacgggtgatgatgtggctagcttgg
atgctgttcttgctactgcttctaagctgtgagcagcagggacatgacgt
aagtcccgccttgccctacgtgaaaggactagtctaggagaaagaggata
acctcttctcttagaggaaggggtaacaggaggacacccagccaagaaca
gcctcttcagaaccgaattttccttctctgtaacaaggctaatgggtggg
agggagtgtagccatagctgttactgtctcttggggctaaagccacagag
cacctgattagaacccggtctttcagttggagtagctgcgacaagtctgt
tctccccaccactggttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94681991_94683139
seq2: B6Ng01-259P07.b_50_1193

seq1  ATTCAAGTCCTTACAAAGGAAGAAAAGCAGCCAAGGAGATAGCTCTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTCCTTACAAAGGAAGAAAAGCAGCCAAGGAGATAGCTCTGTCC  50

seq1  ATTAAGTCCTTGCCTTGTTTCCTCAGACACCACCCCCAAATCTGGGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCCTTGCCTTGTTTCCTCAGACACCACCCCCAAATCTGGGCATG  100

seq1  ATGATGCACATCTGTAATCCTAGCACTGTCAATGTGGAAATAGGTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCACATCTGTAATCCTAGCACTGTCAATGTGGAAATAGGTGGATT  150

seq1  CTCGGGGCTCACTAACCTGCTTGTCAAGGTCCAGGCCAATGAGATACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGCTCACTAACCTGCTTGTCAAGGTCCAGGCCAATGAGATACTCT  200

seq1  GACAAAACAAACAAACACCAGCTATGGCTGGAGAGATGACTCAGCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACAAACAAACACCAGCTATGGCTGGAGAGATGACTCAGCTCAGT  250

seq1  TGATAAAGTGAATGTCAAGCAATCATGAGAACCTGAGTTCAGATTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGTGAATGTCAAGCAATCATGAGAACCTGAGTTCAGATTCCCAG  300

seq1  CACTCACAGGAAAAGCCAGGCACGGTGGTGCACGCTTGTAATCCAGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACAGGAAAAGCCAGGCACGGTGGTGCACGCTTGTAATCCAGGCAC  350

seq1  TGAAGAATCCGAGATGAGAGGACTCCTGAGCTCACTGGACAGTTAGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATCCGAGATGAGAGGACTCCTGAGCTCACTGGACAGTTAGTCTT  400

seq1  GCAGAATTCGTGTGCTCCAGGATCATTAAGAGACACTATCTAAAAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTCGTGTGCTCCAGGATCATTAAGAGACACTATCTAAAAACATG  450

seq1  GTGGGGAGCAATTGGGAAGATACTCAAGGCTGGCCTCTAGCCTACACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGCAATTGGGAAGATACTCAAGGCTGGCCTCTAGCCTACACAGA  500

seq1  GAGAGGGGGCAGGAGGTAGAGATAGCCTCTTTGCCCCTTACACAATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGGCAGGAGGTAGAGATAGCCTCTTTGCCCCTTACACAATGACA  550

seq1  CATCACCTATGGAAAAGTTGGCCCTCAATGTCATAGAAAATGCAGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCTATGGAAAAGTTGGCCCTCAATGTCATAGAAAATGCAGCATCT  600

seq1  GCTTCTGCCTTGGTTGGATTTCAGGGTCAAAGAAGGTTATAATGTTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCCTTGGTTGGATTTCAGGGTCAAAGAAGGTTATAATGTTCATG  650

seq1  AGCCATTCGGTCTGTGGATTTGGTACGACAGCCAGAACAGGCAAAGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCGGTCTGTGGATTTGGTACGACAGCCAGAACAGGCAAAGGTGA  700

seq1  GTGAGCGGGAGCCTGGAGAAGGCGGACTGCTTGAAGGTCCCACAGCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCGGGAGCCTGGAGAAGGCGGACTGCTTGAAGGTCCCACAGCAGGA  750

seq1  GTTCAGGGAAGACCAGACTCCAGAGTGTGGAGCATGCTTTGTCCTCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGGAAGACCAGACTCCAGAGTGTGGAGCATGCTTTGTCCTCAAGG  800

seq1  GCTGCACTCCGGCTTAGGCCCAGATACCTCCGGGTCCTATGCAGAGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACTCCGGCTTAGGCCCAGATACCTCCGGGTCCTATGCAGAGCATC  850

seq1  TGG-AACTCAGGGCCAGGTCCTATCTCAAGGCAGCCAGAGCCTTTAGCCT  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTCAGGGCCAGGTCCTATCTCAAGGCAGCCAGAGCCTTTAGCCT  900

seq1  TGTTTCCACGATCGAATACGCAGGTGCACCGGTGTTCTGCCAAGCACACT  949
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TGTTTCCACGATCGAATACGCAGGTGCACCGGTGTCCTGCCCAGCACACT  950

seq1  CCATGAACATGGGTCCTT-GGCCCGCTCAATTTAACTATATCCCCAGTGA  998
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  CCATGAACAT-GGTCCTTGGGCCCGCTCAATTTAACTATATCCCCAGTGA  999

seq1  CCTCCACTATGT-CCTTCCAGGCCCTCTGCTCCTCCCCCTTGA-CCCTTG  1046
      |||||||||||| ||||||||||||||||||||| |||||||| ||||||
seq2  CCTCCACTATGTCCCTTCCAGGCCCTCTGCTCCT-CCCCTTGACCCCTTG  1048

seq1  ACCTCACCCCAGCTCACTCACTCAGAACCCCATCATGGGTCCTGTTACCA  1096
      || |||||||||||||||||||||| ||||||||||||||||||||||  
seq2  ACTTCACCCCAGCTCACTCACTCAG-ACCCCATCATGGGTCCTGTTAC--  1095

seq1  AAGTATCCTAATACTAAAGTCACCTGGCCCACGGTGGCCCTGCCTCACTT  1146
       |||||| |||| |||| |||||||||  ||||   ||||||||| ||||
seq2  -AGTATCTTAAT-CTAAGGTCACCTGGGACACG--TGCCCTGCCTTACTT  1141

seq1  GCT  1149
      |||
seq2  GCT  1144

seq1: chr1_94836983_94838093
seq2: B6Ng01-259P07.g_68_1187 (reverse)

seq1  CAGACCCAGTGGTGGGGAGCACAGAACTTGTCGGCAGCTACTCCACCTGA  50
      |||| |||||||||||||| |||| ||||||| |||||||||||| ||||
seq2  CAGAACCAGTGGTGGGGAGAACAG-ACTTGTC-GCAGCTACTCCAACTGA  48

seq1  AGGACCGGTGTCTAATCAGCTGCTCTGTG--CTTAGCCCC-AGAG-CAGG  96
      | ||||||  ||||||||| |||||||||   |||||||| |||| ||| 
seq2  AAGACCGGGTTCTAATCAGGTGCTCTGTGGCTTTAGCCCCAAGAGACAGT  98

seq1  TACAGCTATGGCTACAACTCCCTCC--ACCATTAG-CTTGTTACAGAGAA  143
       |||||||||||||| |||||||||   ||||||| ||||||||||||||
seq2  AACAGCTATGGCTAC-ACTCCCTCCCACCCATTAGCCTTGTTACAGAGAA  147

seq1  GGAAA--TCGGTCCTTGAGAGGCTG-TCTTGGCTGGGTGTCCTCCTGTTA  190
      |||||  ||||| ||  |||||||| ||||||||||||||||||||||||
seq2  GGAAAATTCGGTTCTGAAGAGGCTGTTCTTGGCTGGGTGTCCTCCTGTTA  197

seq1  CCCC-TCCTCT-AGAG-AGAGGTTATCCTCTTTCTCCTAGACTAGTCCTT  237
      |||| |||||| |||| |||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTCTAAGAGAAGAGGTTATCCTCTTTCTCCTAGACTAGTCCTT  247

seq1  TCACGTAGGGCAAGGCGGGACCTACGTCATGTCCCCTGCTGCTCACAGCT  287
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  TCACGTAGGGCAAGGCGGGACTTACGTCATGT-CCCTGCTGCTCACAGCT  296

seq1  TAGAAGCAGTAGCAAGAACAGCATCCAAGCTAGCCACATCATCACCCGTG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAGTAGCAAGAACAGCATCCAAGCTAGCCACATCATCACCCGTG  346

seq1  CCCCAGTTGCTTACCAAGCAAAGTCCAAAGCCATTTTTATCTTCCTGATA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTGCTTACCAAGCAAAGTCCAAAGCCATTTTTATCTTCCTGATA  396

seq1  TATTAAGGTTCATGAGGAGAAGTTTGTGTACAAAATAAAGAAAAAAGAAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGGTTCATGAGGAGAAGTTTGTGTACAAAATAAAGAAAAAAGAAA  446

seq1  AGCTCACCTAGATAGAACTGTAAACCACTTAGAACCTTCTAGTGTACTTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCTAGATAGAACTGTAAACCACTTAGAACCTTCTAGTGTACTTC  496

seq1  TTGAGTTTTTCCCTGAATGTGTGCAGCCTTTTCTGATTTTGTTGTATACC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTTCCCTGAATGTGTGCAGCCTTTTCTGATTTTGTTGTATACC  546

seq1  ACTTTTACATAAACTGGAATCTCTCCCTCCACTGCCGGACCTGCTGTGGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACATAAACTGGAATCTCTCCCTCCACTGCCGGACCTGCTGTGGT  596

seq1  TTTCTTGATCCTCCAGTAATGTTAAATAGTTCCGATTTTTTTTTTTTTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATCCTCCAGTAATGTTAAATAGTTCCGATTTTTTTTTTTTTTT  646

seq1  TGCTGTGTTTTGTTTTTTCTATTGTTGTTTTGGTTTTTGGAATTTTGTTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTTTTGTTTTTTCTATTGTTGTTTTGGTTTTTGGAATTTTGTTT  696

seq1  TTGTTTTTGTTTTGAGTTTCAGACTTGCTTAAAACTTAGGTAGTCAAGTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTGAGTTTCAGACTTGCTTAAAACTTAGGTAGTCAAGTG  746

seq1  TTGAGACCATTGTCACTTATTACATGTCTGGCCATATCTTTCTGATATAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCATTGTCACTTATTACATGTCTGGCCATATCTTTCTGATATAA  796

seq1  TTTTCTATACACATTTAAGAATATTTTTATGCAGCTGGCGGTGGTGGCAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATACACATTTAAGAATATTTTTATGCAGCTGGCGGTGGTGGCAC  846

seq1  ACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGT  896

seq1  TCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCGGGATAGCCAGGGCTACA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCGGGATAGCCAGGGCTACA  946

seq1  CAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAG  996

seq1  AATATTTGTACGCTATCACTTAGGTTCAGAAATAGCACTAGGGCAGCGCT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGTACGCTATCACTTAGGTTCAGAAATAGCACTAGGGCAGCGCT  1046

seq1  TCAGTCTGTAGAGCTTGTACTGCACAGCGCGAGGCCGTGAGTCGGACAGA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGTAGAGCTTGTACTGCACAGCGCGAGGCCGTGAGTCGGACAGA  1096

seq1  CATGGCGATGTATACGTGGAATTC  1111
      ||||||||||||||||||||||||
seq2  CATGGCGATGTATACGTGGAATTC  1120