BAC Information

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BAC

Clone NameB6Ng01-260D03
Chromosome1 (Build37)
Map Location 3,348,429 - 3,498,993
singlet/doubletdoublet
Overlap geneXkr4, LOC100038975
Upstream genenone
Downstream geneLOC664792, LOC619785, Rp1h, Sox17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260D03.bB6Ng01-260D03.g
ACCGA065176GA065177
length1,0991,196
definitionB6Ng01-260D03.b B6Ng01-260D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,497,886 - 3,498,993)(3,348,429 - 3,349,632)
sequence
gaattcattaaaaaagaaaaaaacaaaaaaaaaaaaaaacaaaaaaaaaa
aaatgaagaagaacctcatggctgaaggttgccaagttagaaattggcaa
accttgttcggcccagatcaccaactcattttaattaaattgctgctgat
tgagctttgggctatgtcttttcatattgcatttggctctgttctgagcc
agcttgggcccctttgtgttaaattgttcagagatgtcatcgctggatat
tttaactgcatcgtccaacttgactcacttcactgatgtccccaagagag
gtggtttgtagtgaccttcacatgttcccaggtgaaggacacagtccatg
agaggacacagagaggcctaaatattacctagttagaaccaagtaggtag
catagcttttctcctttctccctgctataaagaagtactgttagtgtaag
atgctgtgatgttgtagctggtcaactgctggcctggcttccagtgcact
cagccttgtgtcttccagtctacatgaatgagcactttgctctgcagaga
tgatccatttgattgtactccagtgcagtccagatggggctgaaggcctt
tccaaatgcagatgtaagggagccacctgctcctactggccacaggaaaa
acaatcaagtgactgacacatagagcaggccttgggtggactgcctctca
tcaaatattgcatgactaatgagacttgtccccaatctgcaggtgaccat
cactgactgatgaaaatcaatactgtacttttatggactgacactcctat
ctttacttctgcccattttgtctctcaccagtatcctacccctgaccatc
agttaaataccttttcaccccaacatctacctcacctatgaactgctgga
gcacgggagagacaggccctgcagaaccaaagttatacgatctacataca
cagggcaacacaggatatctgagaggagtcccagtgatgatcacatattg
atatgtagcagagccagaggtctcaaatcaatcatgactcattattgact
gacatttcaggtaagcagtttggtcaaaagggtaccactgtgtagacta

gaattcaatcctttccaaagacaaaattaaaagtctaatcatttgcttat
tactgtcttagagaagcagtctatagagccaaggcaacagtgcacttgct
gggttattttgagtatttgtaagtgttttataatgctcagatttattaat
tgtatttgtaattgcaccatgggaaatgaaccttcataatccaagaagaa
aataaaaacttaaatagaaaaattacatggtttagcatcctctctatatc
atagccaaggtactgatagatacccttaagtatatctctttctctaaatt
atagaaatatatatctatattcatattttatgcatagtatttttgagagt
agattacttagcttattgcttggcttcttagagaaaactatttaatcaag
catattaaacagcaacaaatttaagacaaaactctaagcacaacacagca
cagcacaacacaattccctctgtttttgattggagatactgagctcttta
tttgaagtatctatgtgcttccgtccttagtttccaaatcttatcaagac
ttcctgtaccttcagaagggctttgtgctgttatcattgggttaggtgag
tgccagaacagtcagggctatacagagaaaccctgtctcagaaagaaaaa
aaaaaaaaaaaagaactgaatgtagaaataattgtaaggcatggaaaaaa
atcctaggaagatagttgcaatatctctatatttctcaccagttctcctg
tgcatcctcaggagaaatcatcaaaccaaatctaagtaaaaatgttcatg
accttgtttatgatgaagagactagtcaactcttgatgagaatgagtttc
tcaacagtaccgaaaggataagtcaattcattattaatttgctaagaagc
aagaccccaggagatcacttattgattcctcatctacttaataatgtatc
aatctgtttaaaagcctcagagagctagacaaattgtgtcatgcattaaa
aatatttagacactattagagtgaaataaacattaaaataaaaatgatta
gacctcatggagtagattgacaaagagtctagatcaattagactagagtt
ggcggtctaaatacgaaaagtcacacattgccttctaaagttggcatatt
cggtttccgccttagcttccattaataactgagtctgtgccatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3497886_3498993
seq2: B6Ng01-260D03.b_41_1139 (reverse)

seq1  TAGTCTTACACAGT-GTACCCTTTTGACCAAACTGCTTTACTTGAAAATG  49
      ||||| |||||||| ||||||||||||||||||||| |||| || |||||
seq2  TAGTC-TACACAGTGGTACCCTTTTGACCAAACTGC-TTACCTG-AAATG  47

seq1  TTCAGTTCAATAATGAGTCATTGATTTGATTTGAGACCTCTGGCTTCTGC  99
       |||| |||||||||||||| ||| ||||||||||||||||||| |||||
seq2  -TCAG-TCAATAATGAGTCA-TGA-TTGATTTGAGACCTCTGGC-TCTGC  92

seq1  TACATTATCAATATGTGATCATCACTGGGACTCCTCTCAGATATCCTGTT  149
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TACA-TATCAATATGTGATCATCACTGGGACTCCTCTCAGATATCCTG-T  140

seq1  GTTGCCCTGTGTTATGTAGATCGTATAACTTTGGTTCTGCAGGGCCTGTC  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTGTG-TATGTAGATCGTATAACTTTGGTTCTGCAGGGCCTGTC  189

seq1  TCTCCCGTGCTCCAGCAGTTCATAGGTGAGGTAGATGTTGGGGTGAAAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGTGCTCCAGCAGTTCATAGGTGAGGTAGATGTTGGGGTGAAAAG  239

seq1  GTATTTAACTGATGGTCAGGGGTAGGATACTGGTGAGAGACAAAATGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAACTGATGGTCAGGGGTAGGATACTGGTGAGAGACAAAATGGGC  289

seq1  AGAAGTAAAGATAGGAGTGTCAGTCCATAAAAGTACAGTATTGATTTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAAGATAGGAGTGTCAGTCCATAAAAGTACAGTATTGATTTTCA  339

seq1  TCAGTCAGTGATGGTCACCTGCAGATTGGGGACAAGTCTCATTAGTCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGTGATGGTCACCTGCAGATTGGGGACAAGTCTCATTAGTCATG  389

seq1  CAATATTTGATGAGAGGCAGTCCACCCAAGGCCTGCTCTATGTGTCAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTGATGAGAGGCAGTCCACCCAAGGCCTGCTCTATGTGTCAGTC  439

seq1  ACTTGATTGTTTTTCCTGTGGCCAGTAGGAGCAGGTGGCTCCCTTACATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTGTTTTTCCTGTGGCCAGTAGGAGCAGGTGGCTCCCTTACATC  489

seq1  TGCATTTGGAAAGGCCTTCAGCCCCATCTGGACTGCACTGGAGTACAATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGGAAAGGCCTTCAGCCCCATCTGGACTGCACTGGAGTACAATC  539

seq1  AAATGGATCATCTCTGCAGAGCAAAGTGCTCATTCATGTAGACTGGAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATCATCTCTGCAGAGCAAAGTGCTCATTCATGTAGACTGGAAGA  589

seq1  CACAAGGCTGAGTGCACTGGAAGCCAGGCCAGCAGTTGACCAGCTACAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCTGAGTGCACTGGAAGCCAGGCCAGCAGTTGACCAGCTACAAC  639

seq1  ATCACAGCATCTTACACTAACAGTACTTCTTTATAGCAGGGAGAAAGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCATCTTACACTAACAGTACTTCTTTATAGCAGGGAGAAAGGAG  689

seq1  AAAAGCTATGCTACCTACTTGGTTCTAACTAGGTAATATTTAGGCCTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTATGCTACCTACTTGGTTCTAACTAGGTAATATTTAGGCCTCTC  739

seq1  TGTGTCCTCTCATGGACTGTGTCCTTCACCTGGGAACATGTGAAGGTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCTCATGGACTGTGTCCTTCACCTGGGAACATGTGAAGGTCAC  789

seq1  TACAAACCACCTCTCTTGGGGACATCAGTGAAGTGAGTCAAGTTGGACGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACCACCTCTCTTGGGGACATCAGTGAAGTGAGTCAAGTTGGACGA  839

seq1  TGCAGTTAAAATATCCAGCGATGACATCTCTGAACAATTTAACACAAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTAAAATATCCAGCGATGACATCTCTGAACAATTTAACACAAAGG  889

seq1  GGCCCAAGCTGGCTCAGAACAGAGCCAAATGCAATATGAAAAGACATAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGCTGGCTCAGAACAGAGCCAAATGCAATATGAAAAGACATAGC  939

seq1  CCAAAGCTCAATCAGCAGCAATTTAATTAAAATGAGTTGGTGATCTGGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTCAATCAGCAGCAATTTAATTAAAATGAGTTGGTGATCTGGGC  989

seq1  CGAACAAGGTTTGCCAATTTCTAACTTGGCAACCTTCAGCCATGAGGTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAAGGTTTGCCAATTTCTAACTTGGCAACCTTCAGCCATGAGGTTC  1039

seq1  TTCTTCA-TTTTTTTTTTTTGTTTTTTTTTTTTTTTGTTTTTTTCTTTTT  1098
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTTTTTTTTTTTTGTTTTTTTTTTTTTTTGTTTTTTTCTTTTT  1089

seq1  TAATGAATTC  1108
      ||||||||||
seq2  TAATGAATTC  1099


seq1: chr1_3348429_3349632
seq2: B6Ng01-260D03.g_65_1260

seq1  GAATTCAATCCTTTCCAAAGACAAAATTAAAAGTCTAATCATTTGCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTTTCCAAAGACAAAATTAAAAGTCTAATCATTTGCTTAT  50

seq1  TACTGTCTTAGAGAAGCAGTCTATAGAGCCAAGGCAACAGTGCACTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTTAGAGAAGCAGTCTATAGAGCCAAGGCAACAGTGCACTTGCT  100

seq1  GGGTTATTTTGAGTATTTGTAAGTGTTTTATAATGCTCAGATTTATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTTTGAGTATTTGTAAGTGTTTTATAATGCTCAGATTTATTAAT  150

seq1  TGTATTTGTAATTGCACCATGGGAAATGAACCTTCATAATCCAAGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTAATTGCACCATGGGAAATGAACCTTCATAATCCAAGAAGAA  200

seq1  AATAAAAACTTAAATAGAAAAATTACATGGTTTAGCATCCTCTCTATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACTTAAATAGAAAAATTACATGGTTTAGCATCCTCTCTATATC  250

seq1  ATAGCCAAGGTACTGATAGATACCCTTAAGTATATCTCTTTCTCTAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAAGGTACTGATAGATACCCTTAAGTATATCTCTTTCTCTAAATT  300

seq1  ATAGAAATATATATCTATATTCATATTTTATGCATAGTATTTTTGAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATATATATCTATATTCATATTTTATGCATAGTATTTTTGAGAGT  350

seq1  AGATTACTTAGCTTATTGCTTGGCTTCTTAGAGAAAACTATTTAATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTTAGCTTATTGCTTGGCTTCTTAGAGAAAACTATTTAATCAAG  400

seq1  CATATTAAACAGCAACAAATTTAAGACAAAACTCTAAGCACAACACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAAACAGCAACAAATTTAAGACAAAACTCTAAGCACAACACAGCA  450

seq1  CAGCACAACACAATTCCCTCTGTTTTTGATTGGAGATACTGAGCTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAACACAATTCCCTCTGTTTTTGATTGGAGATACTGAGCTCTTTA  500

seq1  TTTGAAGTATCTATGTGCTTCCGTCCTTAGTTTCCAAATCTTATCAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTATCTATGTGCTTCCGTCCTTAGTTTCCAAATCTTATCAAGAC  550

seq1  TTCCTGTACCTTCAGAAGGGCTTTGTGCTGTTATCATTGGGTTAGGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTACCTTCAGAAGGGCTTTGTGCTGTTATCATTGGGTTAGGTGAG  600

seq1  TGCCAGAACAGTCAGGGCTATACAGAGAAACCCTGTCTCAGAAAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAACAGTCAGGGCTATACAGAGAAACCCTGTCTCAGAAAGAAAAA  650

seq1  AAAAAAAAAAAAGAACTGAATGTAGAAATAATTGTAAGGCATGGAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGAACTGAATGTAGAAATAATTGTAAGGCATGGAAAAAA  700

seq1  ATCCTAGGAAGATAGTTGCAATATCTCTATATTTCTCACCAGTTCTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGAAGATAGTTGCAATATCTCTATATTTCTCACCAGTTCTCCTG  750

seq1  TGCATCCTCAGGAGAAATCATCAAACCAAATCTAAGTAAAAATGTTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTCAGGAGAAATCATCAAACCAAATCTAAGTAAAAATGTTCATG  800

seq1  ACCTTGTTTATGATGAAGAGACTAGTCAACTCTTGATGAGAATGAGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTTATGATGAAGAGACTAGTCAACTCTTGATGAGAATGAGTTTC  850

seq1  TCAACAGTACCG-AAGGATAAGTCAATTCATTATTAATTTGCTAAGAAGC  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTACCGAAAGGATAAGTCAATTCATTATTAATTTGCTAAGAAGC  900

seq1  AAGACCCCAGGAGATCACTTATTGATTCCTCATCTACTTAATAATGTATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCCAGGAGATCACTTATTGATTCCTCATCTACTTAATAATGTATC  950

seq1  AATCTGTTTAAAAGCCTCAGAGAGCTAGACAAATTGTGTCATGCATTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTTAAAAGCCTCAGAGAGCTAGACAAATTGTGTCATGCATTAAA  1000

seq1  AATATTTAGACACTATTAGAGTGGAAATAAAACATTAAAATAAAAATGAT  1049
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  AATATTTAGACACTATTAGAGT-GAAAT-AAACATTAAAATAAAAATGAT  1048

seq1  TAGGACTCATGGAGTAGATTGGACCATAGAGTCTAGATCCATTAGACTAG  1099
      |||  ||||||||||||||||   || |||||||||||| ||||||||||
seq2  TAGACCTCATGGAGTAGATTG--ACAAAGAGTCTAGATCAATTAGACTAG  1096

seq1  AGTTG--CGTCT-AATACGAAGAGGTCACACA-TGGCTTCTAAGTTTTGC  1145
      |||||   |||| |||||||| | |||||||| || |||||||  || ||
seq2  AGTTGGCGGTCTAAATACGAA-AAGTCACACATTGCCTTCTAAAGTTGGC  1145

seq1  AATTAATTCCCTGTTCTCGTCTTAGTTTTCATATTAATTAACTGAGTCTG  1195
      |    |||  | |||  || ||||| || |  ||||| ||||||||||||
seq2  A---TATT--CGGTTTCCGCCTTAGCTTCC--ATTAA-TAACTGAGTCTG  1187

seq1  TGCCATATC  1204
      |||||||||
seq2  TGCCATATC  1196


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