BAC Information

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BAC

Clone NameB6Ng01-260E23
Chromosome1 (Build37)
Map Location 196,990,399 - 196,991,032
singlet/doubletsinglet
Overlap geneCr2
Upstream geneEG623172, Plxna2, Cd34, Cd46, Crry
Downstream geneEG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260E23.bB6Ng01-260E23.g
ACCGA065264GA065265
length1,1461,170
definitionB6Ng01-260E23.b B6Ng01-260E23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattggttttttttgtttgtttgtttgtttgtttgttttgttttt
ttgtttttttttgcttcctgactgcatatcaatgtgtccaggtgtctcaa
gttcctgttgccataacctctctgtcacaacgaagggactctcacactgt
gaatcaaaataaatccttccttaagttgctttcccaggtgttttttgatg
tcaacatgtagagtagcaaatacaatccttttatttcacactctctctgt
tattcgcttgctcgcggagtctttgttatatgctgagctcagcactctag
cacagccctagctctgatgggtgaggtaagctccttgcccttaggatgct
tgttgtaagattaaacatggttggattgtttcagaaaacgggggggggtg
atggaactgagggtgattagcatggttgtgaggactactgatcacatttt
gttaagtgtttgggaatttgaacgtgtgtgaacttaataggtggagactc
tataaataaaataataaaggctctggaaagctacctaattcaaaaccaat
cataactctttctattgtaataaaatattggttatgccttcttatgtcat
gccttttactgaagagtactacctactacaaagtggacattaatgagata
cacacattaacaactttcttttcttttaaatttattaatttttatatatc
tgtttattcagatgttacttattcactttacattctgttaacttccttct
tccggccaccctctcccacaaatcctccccactttcctccttttctgaag
gggtggaagtcccccatgggtttctttccaccctggcacatcaagtctct
gtcgggctaggctgatctgctttccactgagccaaacaagcagtccagta
gagaacatatcccacatacaggcaatagcttttgtgctagcccccacctc
caggacaacttttatctttattcccagtaaagatgagtatgtggtctgat
tagcatggtgaccatttaatttctgtttattgcgcacagggatatatagg
gatatggagattctttaccttaaacactcatttcgatggggtttgctcta
aggaatctgtcctttaagggattccctgtgacctggaagggaggct
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccga
tggaggagctagagaagtacccaagagctaaagggatcttcaaccctata
gtgacacattatgactaacccagtacccctgagctctgactctagcctgc
atatgtatcaaagatgactagtcgtcatcactgaaagagaagtccaatga
catcgcagacttttgttgccagatacaggacgcagcaaagggggcgaaat
tggaagtttattgcctagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196990399_196991032
seq2: B6Ng01-260E23.b_538_1185 (reverse)

seq1  AGCCT-CCTTACAGGTCA-AGTGA--TCCTTTAAGGACAGATTCCTTTGA  46
      ||||| |||| ||||||| || ||   |||| ||||||||||||||| ||
seq2  AGCCTCCCTTCCAGGTCACAGGGAATCCCTTAAAGGACAGATTCCTTAGA  50

seq1  GAAAA--CCATAGAAATGA-TGTTTTGAGTAATG-ATCT-CATATTCCTT  91
      | |||  |||| ||||||| |||||   |||| | |||| |||| ||| |
seq2  GCAAACCCCATCGAAATGAGTGTTTAAGGTAAAGAATCTCCATA-TCCCT  99

seq1  ATATATCCTAGTG-GC-ATAAA-AGAAATTAATTGTTCAC--AGCTAATA  136
      ||||||||  ||| || ||||| ||||||||| || ||||   |||||| 
seq2  ATATATCCCTGTGCGCAATAAACAGAAATTAAATGGTCACCATGCTAATC  149

seq1  TGA-CACATACTCATCTTTTCTGGGAAATAAAGA-AAAAGTTGTCCTGGA  184
       || ||||||||||||||| ||||| |||||||| |||||||||||||||
seq2  AGACCACATACTCATCTTTACTGGG-AATAAAGATAAAAGTTGTCCTGGA  198

seq1  -GTGGGGGCTAGCCCAAAAGCTGTTGCCTGTATGTGGGATATGTTCTTCT  233
       |||||||||||| |||||||| ||||||||||||||||||||||| |||
seq2  GGTGGGGGCTAGCACAAAAGCTATTGCCTGTATGTGGGATATGTTC-TCT  247

seq1  AACTGGACTGCCTTGTTTGGCCTCAGTGG-AAGCAGATCAGCCTAGCCCC  282
       ||||||||| ||||||||| |||||||| ||||||||||||||||||| 
seq2  -ACTGGACTG-CTTGTTTGG-CTCAGTGGAAAGCAGATCAGCCTAGCCCG  294

seq1  ACAGAGACTTGATGTGCCAGGGTGGAAAGAAACCCA-GGGGGACTTCCAC  331
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAGAGACTTGATGTGCCAGGGTGGAAAGAAACCCATGGGGGACTTCCAC  344

seq1  CCCCTCAGAAAAGAAGGAAAGTGGGGAGGA-TTGTGGGAGAGGGTGACCG  380
      ||| ||||||||| |||||||||||||||| ||||||||||||||| |||
seq2  CCCTTCAGAAAAGGAGGAAAGTGGGGAGGATTTGTGGGAGAGGGTGGCCG  394

seq1  GAAGAAGGAAGTAAACAGAATGTAAAGTGAATAAGTAAAAACTGAATAAA  430
      |||||||||||| ||||||||||||||||||||||||| | |||||||||
seq2  GAAGAAGGAAGTTAACAGAATGTAAAGTGAATAAGTAACATCTGAATAAA  444

seq1  CAGATAAATAAAAATAAATAAATTTAAAAGAAAAGAAAGTTGTCAATGTC  480
      |||||| |||||||| ||||||||||||||||||||||||||| ||||| 
seq2  CAGATATATAAAAATTAATAAATTTAAAAGAAAAGAAAGTTGTTAATGTG  494

seq1  TGTATTTCATTAATGTCCACTTTGTAGTACGTAGAACTCTTCAGTAAAAG  530
      ||||| ||||||||||||||||||||||| |||| |||||||||||||||
seq2  TGTATCTCATTAATGTCCACTTTGTAGTAGGTAGTACTCTTCAGTAAAAG  544

seq1  GCATGACATATGAAGGCATAACCAATATTTTATTACACTAGAAAGAGTTA  580
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  GCATGACATAAGAAGGCATAACCAATATTTTATTACAATAGAAAGAGTTA  594

seq1  TGCTTGGTTTTGATACAGGTAGCTTTCCAGAGCCTTTATTATTTTACTTA  630
      || ||||||||||   |||||||||||||||||||||||||||||| |||
seq2  TGATTGGTTTTGAATTAGGTAGCTTTCCAGAGCCTTTATTATTTTATTTA  644

seq1  TAGA  634
      ||||
seq2  TAGA  648