BAC Information

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BAC

Clone NameB6Ng01-260H01
Chromosome1 (Build37)
Map Location 167,047,480 - 167,209,381
singlet/doubletdoublet
Overlap geneTbx19, Sft2d2, Tiprl
Upstream geneSelp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik
Downstream geneGpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260H01.bB6Ng01-260H01.g
ACCGA065363GA065364
length1,1131,042
definitionB6Ng01-260H01.b B6Ng01-260H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,047,480 - 167,048,598)(167,208,340 - 167,209,381)
sequence
gaattcaccttatagtaaatggacaaggtgagccattttgcagaagttag
aattataatagaaatgctttgaaaggtggggactgtcctacagtttaaag
gttatatcttaaagtagcatacaaattggatacaattaaagtctataaat
gtaaggaagataatatggtaagatggaactcattctggatgtaagagaac
tgaaagcaattttttttcttttcttttctttaactaggtattttcttcat
ttacatttcaaatgctatcccaaaagtcccccataccctccccctgccac
tcccctacccacccactcccacttcttggccctggcattcccctgtactg
aggcatttaaagtttgcaagaccaaggggtctctcttcccagtgatggcc
aactaggccatcttctgctacatatgcagctagagacacgagctccaggg
gtactggttagttcatattgttgttccacctatagggttgcagacccctt
tagctccgtgggtactttctctagctcctccattgggggacccgtgttcc
atccaatagctgactgtgagcatccacttctgtgtttgccaggcaccggc
atagcctcacaagagacagctatatcagggtccctgaaagcaaattttta
agtgtattaaattccttttaattctgtggtatttccttttccacttcaaa
aggaacatttttttttacaggaagacaagttatcctatttgtgaaggtaa
aagaggaaagtcctttgggatacattttttcagtgaattgtttctttgtt
gatacacagtcttaccaggcgggcaggcctggaactttctgggtttatga
acatggcctccagcttgtgatgctcctcctgctctgtctcctgagtgctg
cacactgtgcctagtctgggtgcctgaggacacagtcgtcttctgtcccg
gtcctggctagctccggagaggagagtgcaatggctttctcaggatctca
gtgacataaaaacatcctcacagttgtctgatataagacagagctcagat
cactgctgttctggtgagaacaccacatacagtgtcagaacagtgccagg
tcgcacccctcat
gaattctcatctaatgaggcatttttaaataaaatatctgttcaacccat
ctgcctacataaagctagtaaaagaagtacagtgacttatgctgtctgga
ccacacggaacattactgccctattcttcatatgtgacctttaccctcag
gcttggctgaaacatccccctcttccaagaagactttcaaactctctgtg
tcacttttcttatatagaatgtctctggtgtcctgcaggcactgaagaag
cagaggcaggcagatctctgtgagttctaggccagtatgttatacatagc
aagttccaagccaggcagagctacataatgagaccatgtctggaaaaaga
aaacagaaccaacaacaacaaaacaaacaaaaacaaacaaaactccccac
atctctccatttacctgtatttttctatttatttatcctttgtaaatata
attttcttattttgtgcttgtgtgcacatgtgctgaggtcgattgtgaag
gtcacaggacaagccagggaatacacctctctccttctaccatgtgtgtc
taaggagtcaaactccagtggccagatttggccccaggcccctttactgc
tgagcctccccagctctctgcttacttgtttgcaggacccactggtaaat
ataaacactccacaagagcaggtacctcatggtgtggaacagagagattt
gttacttatcaatacaagaccagagctcatcctgagaaaacattcaaaat
aggtaatagctgtggtgatggtttagtggttaaagtgctggccccaagcc
acccagcgcttgggagacagaggcaggtggatctctgtgagttcaaagcc
tgccttgtgtacatagtgtacacagacagccagagccacatagtgagagc
ctatctcaagcaaataaactaaaaacttaaacaaaacattgctggcccct
caggcaaacaggaggagcaaagtttagaccccaggaactgatggaaaggt
cagtgcgtgagatgggaatggccctgtaattgcagtctcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167047480_167048598
seq2: B6Ng01-260H01.b_47_1159

seq1  GAATTCACCTTATAGTAAATGGACAAGGTGAGCCATTTTGCAGAAGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTATAGTAAATGGACAAGGTGAGCCATTTTGCAGAAGTTAG  50

seq1  AATTATAATAGAAATGCTTTGAAAGGTGGGGACTGTCCTACAGTTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAATAGAAATGCTTTGAAAGGTGGGGACTGTCCTACAGTTTAAAG  100

seq1  GTTATATCTTAAAGTAGCATACAAATTGGATACAATTAAAGTCTATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATCTTAAAGTAGCATACAAATTGGATACAATTAAAGTCTATAAAT  150

seq1  GTAAGGAAGATAATATGGTAAGATGGAACTCATTCTGGATGTAAGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAAGATAATATGGTAAGATGGAACTCATTCTGGATGTAAGAGAAC  200

seq1  TGAAAGCAATTTTTTTTCTTTTCTTTTCTTTAACTAGGTATTTTCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAATTTTTTTTCTTTTCTTTTCTTTAACTAGGTATTTTCTTCAT  250

seq1  TTACATTTCAAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCTGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCAAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCTGCCAC  300

seq1  TCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTG  350

seq1  AGGCATTTAAAGTTTGCAAGACCAAGGGGTCTCTCTTCCCAGTGATGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTAAAGTTTGCAAGACCAAGGGGTCTCTCTTCCCAGTGATGGCC  400

seq1  AACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCCAGGG  450

seq1  GTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTT  500

seq1  TAGCTCCGTGGGTACTTTCTCTAGCTCCTCCATTGGGGGACCCGTGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCGTGGGTACTTTCTCTAGCTCCTCCATTGGGGGACCCGTGTTCC  550

seq1  ATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCACCGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCACCGGC  600

seq1  ATAGCCTCACAAGAGACAGCTATATCAGGGTCCCTGAAAGCAAATTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCACAAGAGACAGCTATATCAGGGTCCCTGAAAGCAAATTTTTA  650

seq1  AGTGTATTAAATTCCTTTTAATTCTGTGGTATTTCCTTTTCCACTTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTAAATTCCTTTTAATTCTGTGGTATTTCCTTTTCCACTTCAAA  700

seq1  AGGAACATTTTTTTTTACAGGAAGACAAGTTATCCTATTTGTGAAGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATTTTTTTTTACAGGAAGACAAGTTATCCTATTTGTGAAGGTAA  750

seq1  AAGAGGAAAGTCCTTTGGGATACATTTTTTCAGTGAATTGTTTCTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAGTCCTTTGGGATACATTTTTTCAGTGAATTGTTTCTTTGTT  800

seq1  GATACACAGTCTTACCAGGCGGGCAGGCCTGGAACTTTCTGGGTTTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACAGTCTTACCAGGCGGGCAGGCCTGGAACTTTCTGGGTTTATGA  850

seq1  ACATGGCCTCCAGCTTGTGATGCTCCTCCTGCTCTGTCTCCTGAGTGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCTCCAGCTTGTGATGCTCCTCCTGCTCTGTCTCCTGAGTGCTG  900

seq1  CACACTGTGCCTAGTCTGGGTGCCTGAGGACACAGTCGTCTTCTGTCCCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTGCCTAGTCTGGGTGCCTGAGGACACAGTCGTCTTCTGTCCCG  950

seq1  GTCCTGGCTAGCTCCGGAGAGGAGAGTGCAATGGCTTTCCTCAAGGATCT  1000
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  GTCCTGGCTAGCTCCGGAGAGGAGAGTGCAATGGCTTT-CTC-AGGATCT  998

seq1  CAGTGACAT-AAAACATCCTCACAGTTGTCTTGATATAAGACAGGAGCTC  1049
      ||||||||| |||||||||||||||||||| |||||||||||| ||||||
seq2  CAGTGACATAAAAACATCCTCACAGTTGTC-TGATATAAGACA-GAGCTC  1046

seq1  AGATTCACTGCTG-TCTGGTGAGACAACCACATACAGTGTCAG-ACAGTG  1097
      ||| ||||||||| ||||||||||  ||||||||||||||||| ||||||
seq2  AGA-TCACTGCTGTTCTGGTGAGAACACCACATACAGTGTCAGAACAGTG  1095

seq1  GCCCAGGGTCGCAACCCCTCAT  1119
        ||| |||||| |||||||||
seq2  --CCA-GGTCGC-ACCCCTCAT  1113

seq1: chr1_167208340_167209381
seq2: B6Ng01-260H01.g_65_1106 (reverse)

seq1  TTTGAGACTGCAATTACAGGCCCATT-CCATCTCACGCACCTGACCTTTC  49
      |||||||||||||||||||| ||||| |||||||||||| ||||||||||
seq2  TTTGAGACTGCAATTACAGGGCCATTCCCATCTCACGCA-CTGACCTTTC  49

seq1  CATCAGTT-CTGGGGTCTAAACTTTGCTCCTCCTGTTTGCCTGAGGGGCC  98
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTCCTGGGGTCTAAACTTTGCTCCTCCTGTTTGCCTGAGGGGCC  99

seq1  AGCAATGTTTTTGTTTAAGTTTTTAGTTTATTTGCTTGAGATAGGCTCTC  148
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATG-TTTTGTTTAAGTTTTTAGTTTATTTGCTTGAGATAGGCTCTC  148

seq1  ACTATGTGGCTCTGGCTGTCTGTGTACACTATGTACACAAGGCAGGCTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGGCTCTGGCTGTCTGTGTACACTATGTACACAAGGCAGGCTTT  198

seq1  GAACTCACAGAGATCCACCTGCCTCTGTCTCCCAAGCGCTGGGTGGCTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACAGAGATCCACCTGCCTCTGTCTCCCAAGCGCTGGGTGGCTTG  248

seq1  GGGCCAGCACTTTAACCACTAAACCATCACCACAGCTATTACCTATTTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCACTTTAACCACTAAACCATCACCACAGCTATTACCTATTTTG  298

seq1  AATGTTTTCTCAGGATGAGCTCTGGTCTTGTATTGATAAGTAACAAATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCTCAGGATGAGCTCTGGTCTTGTATTGATAAGTAACAAATCT  348

seq1  CTCTGTTCCACACCATGAGGTACCTGCTCTTGTGGAGTGTTTATATTTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCCACACCATGAGGTACCTGCTCTTGTGGAGTGTTTATATTTAC  398

seq1  CAGTGGGTCCTGCAAACAAGTAAGCAGAGAGCTGGGGAGGCTCAGCAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTCCTGCAAACAAGTAAGCAGAGAGCTGGGGAGGCTCAGCAGTA  448

seq1  AAGGGGCCTGGGGCCAAATCTGGCCACTGGAGTTTGACTCCTTAGACACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCCTGGGGCCAAATCTGGCCACTGGAGTTTGACTCCTTAGACACA  498

seq1  CATGGTAGAAGGAGAGAGGTGTATTCCCTGGCTTGTCCTGTGACCTTCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGAAGGAGAGAGGTGTATTCCCTGGCTTGTCCTGTGACCTTCAC  548

seq1  AATCGACCTCAGCACATGTGCACACAAGCACAAAATAAGAAAATTATATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGACCTCAGCACATGTGCACACAAGCACAAAATAAGAAAATTATATT  598

seq1  TACAAAGGATAAATAAATAGAAAAATACAGGTAAATGGAGAGATGTGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGATAAATAAATAGAAAAATACAGGTAAATGGAGAGATGTGGGG  648

seq1  AGTTTTGTTTGTTTTTGTTTGTTTTGTTGTTGTTGGTTCTGTTTTCTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTGTTTTTGTTTGTTTTGTTGTTGTTGGTTCTGTTTTCTTTT  698

seq1  TCCAGACATGGTCTCATTATGTAGCTCTGCCTGGCTTGGAACTTGCTATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACATGGTCTCATTATGTAGCTCTGCCTGGCTTGGAACTTGCTATG  748

seq1  TATAACATACTGGCCTAGAACTCACAGAGATCTGCCTGCCTCTGCTTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATACTGGCCTAGAACTCACAGAGATCTGCCTGCCTCTGCTTCTT  798

seq1  CAGTGCCTGCAGGACACCAGAGACATTCTATATAAGAAAAGTGACACAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTGCAGGACACCAGAGACATTCTATATAAGAAAAGTGACACAGA  848

seq1  GAGTTTGAAAGTCTTCTTGGAAGAGGGGGATGTTTCAGCCAAGCCTGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAAAGTCTTCTTGGAAGAGGGGGATGTTTCAGCCAAGCCTGAGG  898

seq1  GTAAAGGTCACATATGAAGAATAGGGCAGTAATGTTCCGTGTGGTCCAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTCACATATGAAGAATAGGGCAGTAATGTTCCGTGTGGTCCAGA  948

seq1  CAGCATAAGTCACTGTACTTCTTTTACTAGCTTTATGTAGGCAGATGGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAAGTCACTGTACTTCTTTTACTAGCTTTATGTAGGCAGATGGGT  998

seq1  TGAACAGATATTTTATTTAAAAATGCCTCATTAGATGAGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGATATTTTATTTAAAAATGCCTCATTAGATGAGAATTC  1042