BAC Information

Click to search

BAC

Clone NameB6Ng01-260H19
Chromosome1 (Build37)
Map Location 108,797,566 - 108,922,172
singlet/doubletdoublet
Overlap geneSerpinb12, Serpinb13, LOC666394
Upstream geneEG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141
Downstream geneSerpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260H19.bB6Ng01-260H19.g
ACCGA065399GA065400
length1,1791,154
definitionB6Ng01-260H19.b B6Ng01-260H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,920,982 - 108,922,172)(108,797,566 - 108,798,725)
sequence
gaattctctattagctgtttgcaaagtcttaaggacactgaacttgtacc
ttctagttaagagatatacattgcaaaagacttaacaaataataataata
attaataattgataataaaaagaaatttatttgccagaatctgatgatac
aggtatgtcattttctacaagaaatgttcattacagggtgatgttttatt
tagtgaagtcgttctaacctttgtgctgactttatgctgttctaggactt
caaggtcacactaagccaccatgcatttgtttgctgaaaccattaataaa
ttcacacttgagctgtacaggcagctcagagaatcagataacaacatttt
ctattccccgatcagcatgatgacagcattagcaatgctccagcttggag
ccaaaggaaacactgaaaaacaaattgagaaggtaggtctaagcttcgtt
tttgaccagcttgaatttgtctccctggcactctgtcagtgtataagcaa
atgagcataaagcttgatgcctgagaagaagaacaaggtgctgagtaggc
attgccatgactgtgaccatgaaactaagggagggacacgcccttcccaa
acacagtccagttgattcctgatatcccttgggggctaggctagaataat
tgcctttaagtgttcaacaacaagaaatttcttaagtggtagagactatt
aatgcaataaatagattgtctcaggtctgagtgatgagaattgcagtgtt
tcctaagtactgagaggatgggcatctatttgtgtgactggtgatagatc
aggtttatagtgtttcttacgaacatacaaatgttgggagtatacatttt
ccagaatttttaagttttttgcctttattttcagtgttttgttctgtttt
tgtttccttggatttagacagaactttaagtgaacttttcttgctgcact
taatgtctctcccaggttcttcaattcaatgaaaccaccaagagacacag
aaaaatctgcacactgccatgtaagtgcaggtactcatgctagaagagct
gcagattgtgacagcactatactttaagagccattttacatttaaaggat
cagtctagagggggaatttcaacaaagagattgggtgtggttagtgtgat
gcttctttctccatagtcattatgttcag
gaattccacacggggacataaagtattctgattacattctatctgattac
gtcactgttgctctttaccattcctaccgaccacaccccttcatccttac
ttgtcacttcagcaggctcacgacttcattttgttttgtgacccatctgg
cttaactagagctatctgtgaaccctgaaatggacctatccatggaactt
ttaaatagtctcttcttgtactgtaatggcttctgttgttttgtctaatg
tgggttctttgttgtaagcggttacctcgctcctgacacaaaagaaaggg
ttgctttcatatgtttgttgaactactagggatgaataagtgaagaaccc
agtataaggttgaggaccattaattagtcattacaggaggactctgagcc
acagatgcccagaactcatgaaacaggcagggagcctgccaccccaggct
gtggtaagtcctgttctgaatgcctctggtttgcagcctttccaaggccc
cggagggacttgagtgttactcaaggtttactgtttgagaaaccgcagaa
cttgtgaaattgtctctgtggccttttttctccacatagagccaaccccc
taaggttgttacagcccaagggcaatgtgtatgaagactaatggtcatct
gccagctgctcatctcatgttccactagatggcgacattcatcatgctat
ggatgggctgcccactgtctcaaatgctcagttgtaatcaatcctttgaa
gatctgtcagctctagaagtgccttcgaccttttctgcctgcattgctga
ggacatttttttttcaagtgaaaaacacacagtgcatctccttttcttaa
atgatagcatgtcttccagtttcatattaggcacttcatctattgttcta
atcatggtgtgagtgcttacatgagctctgtcgtcaaacgttgtaaagtg
tgcaacagtagagagctgatgactgtaggtacagagctacgcagtggacc
tatcaaaccaatccatttttcttaacgactttttcatgcctgtggatact
agttatcattttcttctcaccctcaactgtcaaaaccaccagatccaatg
atatttgacaatgatgattttcttttcaatcatgccattgaagtaaatgt
actt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_108920982_108922172
seq2: B6Ng01-260H19.b_48_1226 (reverse)

seq1  CTGAACATAATGACTAT-GAGAAAGAAGCATCACACTAACCCACACCCAA  49
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  CTGAACATAATGACTATGGAGAAAGAAGCATCACACTAA-CCACACCCAA  49

seq1  TTCTCTTTTGTTTGGAAATT-CCCCTCTAGACTGATTCCTTTAAATGTAA  98
       |||| ||||||  |||||| |||||||||||||| ||||||||||||||
seq2  -TCTC-TTTGTT--GAAATTCCCCCTCTAGACTGA-TCCTTTAAATGTAA  94

seq1  AATGGCCTCTTTAAAGTATAGTGCTGTCAACAATCTGCAGCTCTTCTAGG  148
      ||||| ||| |||||||||||||||||| ||||||||||||||||||| |
seq2  AATGG-CTC-TTAAAGTATAGTGCTGTC-ACAATCTGCAGCTCTTCTA-G  140

seq1  CATGAGGTACCCTGCACTTACATGGCAGTGTGCAGATTTTTCTGTTGTCT  198
      ||||| ||| |||||||||||||||||||||||||||||||||| |||| 
seq2  CATGA-GTA-CCTGCACTTACATGGCAGTGTGCAGATTTTTCTG-TGTC-  186

seq1  TCTTGGTGGTTTCATTGAATTGAAGAACCTGGGAGAGACATTAAGTGCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGGTTTCATTGAATTGAAGAACCTGGGAGAGACATTAAGTGCAG  236

seq1  CAAGAAAAGTTCACTTAAAGTTCTGTCTAAATCCAAGGAAACAAAAACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAGTTCACTTAAAGTTCTGTCTAAATCCAAGGAAACAAAAACAG  286

seq1  AACAAAACACTGAAAATAAAGGCAAAAAACTTAAAAATTCTGGAAAATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACACTGAAAATAAAGGCAAAAAACTTAAAAATTCTGGAAAATGT  336

seq1  ATACTCCCAACATTTGTATGTTCGTAAGAAACACTATAAACCTGATCTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCAACATTTGTATGTTCGTAAGAAACACTATAAACCTGATCTAT  386

seq1  CACCAGTCACACAAATAGATGCCCATCCTCTCAGTACTTAGGAAACACTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCACACAAATAGATGCCCATCCTCTCAGTACTTAGGAAACACTG  436

seq1  CAATTCTCATCACTCAGACCTGAGACAATCTATTTATTGCATTAATAGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCATCACTCAGACCTGAGACAATCTATTTATTGCATTAATAGTC  486

seq1  TCTACCACTTAAGAAATTTCTTGTTGTTGAACACTTAAAGGCAATTATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACTTAAGAAATTTCTTGTTGTTGAACACTTAAAGGCAATTATTC  536

seq1  TAGCCTAGCCCCCAAGGGATATCAGGAATCAACTGGACTGTGTTTGGGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAGCCCCCAAGGGATATCAGGAATCAACTGGACTGTGTTTGGGAA  586

seq1  GGGCGTGTCCCTCCCTTAGTTTCATGGTCACAGTCATGGCAATGCCTACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGTCCCTCCCTTAGTTTCATGGTCACAGTCATGGCAATGCCTACT  636

seq1  CAGCACCTTGTTCTTCTTCTCAGGCATCAAGCTTTATGCTCATTTGCTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTTGTTCTTCTTCTCAGGCATCAAGCTTTATGCTCATTTGCTTA  686

seq1  TACACTGACAGAGTGCCAGGGAGACAAATTCAAGCTGGTCAAAAACGAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGACAGAGTGCCAGGGAGACAAATTCAAGCTGGTCAAAAACGAAG  736

seq1  CTTAGACCTACCTTCTCAATTTGTTTTTCAGTGTTTCCTTTGGCTCCAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCTACCTTCTCAATTTGTTTTTCAGTGTTTCCTTTGGCTCCAAG  786

seq1  CTGGAGCATTGCTAATGCTGTCATCATGCTGATCGGGGAATAGAAAATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCATTGCTAATGCTGTCATCATGCTGATCGGGGAATAGAAAATGT  836

seq1  TGTTATCTGATTCTCTGAGCTGCCTGTACAGCTCAAGTGTGAATTTATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTGATTCTCTGAGCTGCCTGTACAGCTCAAGTGTGAATTTATTA  886

seq1  ATGGTTTCAGCAAACAAATGCATGGTGGCTTAGTGTGACCTTGAAGTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCAGCAAACAAATGCATGGTGGCTTAGTGTGACCTTGAAGTCCT  936

seq1  AGAACAGCATAAAGTCAGCACAAAGGTTAGAACGACTTCACTAAATAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCATAAAGTCAGCACAAAGGTTAGAACGACTTCACTAAATAAAA  986

seq1  CATCACCCTGTAATGAACATTTCTTGTAGAAAATGACATACCTGTATCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCCTGTAATGAACATTTCTTGTAGAAAATGACATACCTGTATCAT  1036

seq1  CAGATTCTGGCAAATAAATTTCTTTTTATTATCAATTATTAATTATTATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTGGCAAATAAATTTCTTTTTATTATCAATTATTAATTATTATT  1086

seq1  ATTATTTGTTAAGTCTTTTGCAATGTATATCTCTTAACTAGAAGGTACAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGTTAAGTCTTTTGCAATGTATATCTCTTAACTAGAAGGTACAA  1136

seq1  GTTCAGTGTCCTTAAGACTTTGCAAACAGCTAATAGAGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGTCCTTAAGACTTTGCAAACAGCTAATAGAGAATTC  1179

seq1: chr1_108797566_108798725
seq2: B6Ng01-260H19.g_62_1215

seq1  GAATTCCACACGGGGACATAAAGTATTCTGATTACATTCTATCTGATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACGGGGACATAAAGTATTCTGATTACATTCTATCTGATTAC  50

seq1  GTCACTGTTGCTCTTTACCATTCCTACCGACCACACCCCTTCATCCTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTTGCTCTTTACCATTCCTACCGACCACACCCCTTCATCCTTAC  100

seq1  TTGTCACTTCAGCAGGCTCACGACTTCATTTTGTTTTGTGACCCATCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTTCAGCAGGCTCACGACTTCATTTTGTTTTGTGACCCATCTGG  150

seq1  CTTAACTAGAGCTATCTGTGAACCCTGAAATGGACCTATCCATGGAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTAGAGCTATCTGTGAACCCTGAAATGGACCTATCCATGGAACTT  200

seq1  TTAAATAGTCTCTTCTTGTACTGTAATGGCTTCTGTTGTTTTGTCTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGTCTCTTCTTGTACTGTAATGGCTTCTGTTGTTTTGTCTAATG  250

seq1  TGGGTTCTTTGTTGTAAGCGGTTACCTCGCTCCTGACACAAAAGAAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTTTGTTGTAAGCGGTTACCTCGCTCCTGACACAAAAGAAAGGG  300

seq1  TTGCTTTCATATGTTTGTTGAACTACTAGGGATGAATAAGTGAAGAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCATATGTTTGTTGAACTACTAGGGATGAATAAGTGAAGAACCC  350

seq1  AGTATAAGGTTGAGGACCATTAATTAGTCATTACAGGAGGACTCTGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGGTTGAGGACCATTAATTAGTCATTACAGGAGGACTCTGAGCC  400

seq1  ACAGATGCCCAGAACTCATGAAACAGGCAGGGAGCCTGCCACCCCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCCCAGAACTCATGAAACAGGCAGGGAGCCTGCCACCCCAGGCT  450

seq1  GTGGTAAGTCCTGTTCTGAATGCCTCTGGTTTGCAGCCTTTCCAAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGTCCTGTTCTGAATGCCTCTGGTTTGCAGCCTTTCCAAGGCCC  500

seq1  CGGAGGGACTTGAGTGTTACTCAAGGTTTACTGTTTGAGAAACCGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGGACTTGAGTGTTACTCAAGGTTTACTGTTTGAGAAACCGCAGAA  550

seq1  CTTGTGAAATTGTCTCTGTGGCCTTTTTTCTCCACATAGAGCCAACCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAAATTGTCTCTGTGGCCTTTTTTCTCCACATAGAGCCAACCCCC  600

seq1  TAAGGTTGTTACAGCCCAAGGGCAATGTGTATGAAGACTAATGGTCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTGTTACAGCCCAAGGGCAATGTGTATGAAGACTAATGGTCATCT  650

seq1  GCCAGCTGCTCATCTCATGTTCCACTAGATGGCGACATTCATCATGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGCTCATCTCATGTTCCACTAGATGGCGACATTCATCATGCTAT  700

seq1  GGATGGGCTGCCCACTGTCTCAAATGCTCAGTTGTAATCAATCCTTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGCTGCCCACTGTCTCAAATGCTCAGTTGTAATCAATCCTTTGAA  750

seq1  GATCTGTCAGCTCTAGAAGTGCCTTCGACCTTTTCTGCCTGCATTGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCAGCTCTAGAAGTGCCTTCGACCTTTTCTGCCTGCATTGCTGA  800

seq1  GGACA-TTTTTTTTCAAGTGAAAAACACACAGTGCATCTCCTTTTCTTAA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTTTTTTTCAAGTGAAAAACACACAGTGCATCTCCTTTTCTTAA  850

seq1  ATGATAGCATGTCTTCCAGTTTCATATTAGGCACTTCATCTATTGTTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCATGTCTTCCAGTTTCATATTAGGCACTTCATCTATTGTTCTA  900

seq1  ATCATGGTGTGAGTGCTTACATGAGCTCTGTCGTCAAACGTTGTAAAGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTGTGAGTGCTTACATGAGCTCTGTCGTCAAACGTTGTAAAGTG  950

seq1  TGCAACAGTAGAGAGCTGATGACTGTAGGTACAGAGCTACGCAGTGGACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGTAGAGAGCTGATGACTGTAGGTACAGAGCTACGCAGTGGACC  1000

seq1  TATCAAACCAATCCATTTTTCTTAACCGAC-TTTTCATGCCTGTGGATAA  1048
      ||||||||||||||||||||||||| |||| ||||||||||||||||| |
seq2  TATCAAACCAATCCATTTTTCTTAA-CGACTTTTTCATGCCTGTGGAT-A  1048

seq1  CTAGTTTATCATTTTCCTTCTCACCCTCAACTGTCAAAAACCACCCAAGA  1098
      |||| |||||||||| ||||||||||||||||||| |||||||||  |||
seq2  CTAG-TTATCATTTT-CTTCTCACCCTCAACTGTC-AAAACCACC--AGA  1093

seq1  TCCCATGATA-TTGACAATGATGATATTTCTTTTCAATTCATGCATGAAA  1147
      ||| |||||| |||||||||||||| ||||||||||| ||||||     |
seq2  TCCAATGATATTTGACAATGATGAT-TTTCTTTTCAA-TCATGCCATTGA  1141

seq1  ATTAAATGTACTT  1160
      | |||||||||||
seq2  AGTAAATGTACTT  1154