BAC Information

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BAC

Clone NameB6Ng01-260I20
Chromosome1 (Build37)
Map Location 72,123,136 - 72,316,336
singlet/doubletdoublet
Overlap geneLOC667937, LOC100043255, Mreg, Pecr
Upstream geneBard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319
Downstream geneTmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260I20.bB6Ng01-260I20.g
ACCGA065444GA065445
length6031,137
definitionB6Ng01-260I20.b B6Ng01-260I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,123,136 - 72,123,738)(72,315,212 - 72,316,336)
sequence
gaattctcaacacagggacacaccagaagaaaacatgcaagaaagctgaa
tcactgcaattcactaagcaaaagaggaattcaataaagcaaaatgctcc
cttcatggaactgaggtgacattggaaaaaaaatgaaattagaatctgga
gacatgagggacagtttgctcatccactagcaagtcagggcaggggtgga
agacttgggggtgtggaaagggatcagaactttggtctctgtttgtcaca
ggaaacacctggcatctgggagccaaaaatcaatccaaaggttgtatcaa
ttgtagaaaagaatcataattacaagtctccttgggaggcttttcattcc
catcatggggtggggaaaagcataggaaaggaagcacagtttccagtgag
tttgtgatattttatgacagaaccagaccaaaaataggaaaagtctgatt
tctcttttagaaaatcaatctctctctctctctctctctctctctgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctgtctcactgtcac
tgtctttctgtctctatctctctgtctctctgattctgtctctctgtatc
tct
gaattctgacaccttctagcctccctgggcacctgggtgctcgtcccctg
taacacacacacagagttaaaataataaaaataaatcttaaaaagaaata
ctgctttggggactggcaagatagctcagtgggtaaagtgctgtctgtgc
aagtgtgaagggctgggttcagatctccacactcacgttcacagagagac
acagcagcacacacctgtaactccagtcctgggccgctcccacgatggcc
gaccagcctgtgtgaaacagtgagttccaggctcagtgagaaaccctgtc
tcaaaacaagcaaacaggaaaaaaggagacggcataatgaagaaccatag
aaggcacggatagtgatgtctggcttctccatgtgcctgcctggttgaga
acatacatgtgcacacacacatgtaacatgtatgttcaccatgacatata
acataacaagtgtggaaagttcaccacacttgtacacacaaaaaaagcac
tactttgaagagtaacttttttcctaagtgattttgttatttcttgttat
agtgtgagtcccttatttggaaaaaaaaaatgaatatcaatgggaagcaa
ctctcagttttaagaccaagtagaagttaagttatgtgttatatatcaca
aatgtagctacagtattactcaaaaaaaatctttttttctttttgagccc
agtggtggtggcgcacacctttaatccctgcacttgggaggaagaggcag
gtggatctctgagttcgaggccagcctggcctacagagtgagttccagga
tggccagagctacagagaccttgtctcagggaaaaccatcttttttttgt
atgggagtggtgcgtgtatgtgttcatgtgtatgcatgtgcacgtacagg
caaaaggcagagtttcaatgctagctgtcttcttcagccaatctctacct
tagctttgaagacaagggtctctgtgttgaccccaaagctccctggattt
gactagactacctggccagcaaggccccaggaacttgccctgtccccgat
gcccttagcctcctagtgggaatgctgcaagcccagattgcagaattctt
catgatttcaaagccatgcaagtctaactatgaccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72123136_72123738
seq2: B6Ng01-260I20.b_46_648

seq1  GAATTCTCAACACAGGGACACACCAGAAGAAAACATGCAAGAAAGCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACACAGGGACACACCAGAAGAAAACATGCAAGAAAGCTGAA  50

seq1  TCACTGCAATTCACTAAGCAAAAGAGGAATTCAATAAAGCAAAATGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAATTCACTAAGCAAAAGAGGAATTCAATAAAGCAAAATGCTCC  100

seq1  CTTCATGGAACTGAGGTGACATTGGAAAAAAAATGAAATTAGAATCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGAACTGAGGTGACATTGGAAAAAAAATGAAATTAGAATCTGGA  150

seq1  GACATGAGGGACAGTTTGCTCATCCACTAGCAAGTCAGGGCAGGGGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGGGACAGTTTGCTCATCCACTAGCAAGTCAGGGCAGGGGTGGA  200

seq1  AGACTTGGGGGTGTGGAAAGGGATCAGAACTTTGGTCTCTGTTTGTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGGGGTGTGGAAAGGGATCAGAACTTTGGTCTCTGTTTGTCACA  250

seq1  GGAAACACCTGGCATCTGGGAGCCAAAAATCAATCCAAAGGTTGTATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACCTGGCATCTGGGAGCCAAAAATCAATCCAAAGGTTGTATCAA  300

seq1  TTGTAGAAAAGAATCATAATTACAAGTCTCCTTGGGAGGCTTTTCATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAAAAGAATCATAATTACAAGTCTCCTTGGGAGGCTTTTCATTCC  350

seq1  CATCATGGGGTGGGGAAAAGCATAGGAAAGGAAGCACAGTTTCCAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGGGTGGGGAAAAGCATAGGAAAGGAAGCACAGTTTCCAGTGAG  400

seq1  TTTGTGATATTTTATGACAGAACCAGACCAAAAATAGGAAAAGTCTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATATTTTATGACAGAACCAGACCAAAAATAGGAAAAGTCTGATT  450

seq1  TCTCTTTTAGAAAATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTAGAAAATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTG  500

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTCTCTGTCTCTCTGTCTC  550
      ||||||||||||||||||||||||||| |||||||||||||| ||||| |
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTCTGTCTCACTGTCAC  550

seq1  TGTCTTTCTGTCTCTATCTCTCTGTCTCTCTGACTCTGTCTCTCTGTATC  600
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTCTTTCTGTCTCTATCTCTCTGTCTCTCTGATTCTGTCTCTCTGTATC  600

seq1  TCT  603
      |||
seq2  TCT  603

seq1: chr1_72315212_72316336
seq2: B6Ng01-260I20.g_67_1203 (reverse)

seq1  TCGGTCATAGTT-GAACTGCAT-GCTCTGAAATCATG-AGAA-TCTGCAT  46
      |||||||||||| ||  ||||| ||| |||||||||| |||| |||||| 
seq2  TCGGTCATAGTTAGACTTGCATGGCTTTGAAATCATGAAGAATTCTGCAA  50

seq1  TCT-GGCCTGCAGCA-TCCCACTAGGGAGGCT-AGGGCATCGGGGACA-G  92
      ||| ||| ||||||| |||||||| ||||||| ||||||||||||||| |
seq2  TCTGGGCTTGCAGCATTCCCACTA-GGAGGCTAAGGGCATCGGGGACAGG  99

seq1  GCAGGTCCCTGGGG-CTTGCTGGCCAGGTAGTCTAGTCAAAT-CAGGGAG  140
      ||| || ||||||| ||||||||||||||||||||||||||| |||||||
seq2  GCAAGTTCCTGGGGCCTTGCTGGCCAGGTAGTCTAGTCAAATCCAGGGAG  149

seq1  CTTTGGGGTCAACACAGAGACCC-TGTCTCAAAAGCTAAGGTAGAGATTG  189
      ||||||||||||||||||||||| |||||  |||||||||||||||||||
seq2  CTTTGGGGTCAACACAGAGACCCTTGTCTTCAAAGCTAAGGTAGAGATTG  199

seq1  GCTGAAGAAGACAGCTAGCATTG-AACTCTGCCTTTTGCCTGTACGTGCA  238
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTGAAGAAGACAGCTAGCATTGAAACTCTGCCTTTTGCCTGTACGTGCA  249

seq1  CATGCATACACATGAACACATACACGCACCACTCCCATAC-AAAAAAAGA  287
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATGCATACACATGAACACATACACGCACCACTCCCATACAAAAAAAAGA  299

seq1  TGGTTTTCCCTGAGACAAGGTCTCTGTAGCTCTGGCCATCCTGGAACTCA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCCCTGAGACAAGGTCTCTGTAGCTCTGGCCATCCTGGAACTCA  349

seq1  CTCTGTAGGCCAGGCTGGCCTCGAACTCAGAGATCCACCTGCCTCTTCCT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGGCCAGGCTGGCCTCGAACTCAGAGATCCACCTGCCTCTTCCT  399

seq1  CCCAAGTGCAGGGATTAAAGGTGTGCGCCACCACCACTGGGCTCAAAAAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCAGGGATTAAAGGTGTGCGCCACCACCACTGGGCTCAAAAAG  449

seq1  AAAAAAAGATTTTTTTTGAGTAATACTGTAGCTACATTTGTGATATATAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATTTTTTTTGAGTAATACTGTAGCTACATTTGTGATATATAA  499

seq1  CACATAACTTAACTTCTACTTGGTCTTAAAACTGAGAGTTGCTTCCCATT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAACTTAACTTCTACTTGGTCTTAAAACTGAGAGTTGCTTCCCATT  549

seq1  GATATTCATTTTTTTTTTCCAAATAAGGGACTCACACTATAACAAGAAAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCATTTTTTTTTTCCAAATAAGGGACTCACACTATAACAAGAAAT  599

seq1  AACAAAATCACTTAGGAAAAAAGTTACTCTTCAAAGTAGTGCTTTTTTTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCACTTAGGAAAAAAGTTACTCTTCAAAGTAGTGCTTTTTTTG  649

seq1  TGTGTACAAGTGTGGTGAACTTTCCACACTTGTTATGTTATATGTCATGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAAGTGTGGTGAACTTTCCACACTTGTTATGTTATATGTCATGG  699

seq1  TGAACATACATGTTACATGTGTGTGTGCACATGTATGTTCTCAACCAGGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATACATGTTACATGTGTGTGTGCACATGTATGTTCTCAACCAGGC  749

seq1  AGGCACATGGAGAAGCCAGACATCACTATCCGTGCCTTCTATGGTTCTTC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATGGAGAAGCCAGACATCACTATCCGTGCCTTCTATGGTTCTTC  799

seq1  ATTATGCCGTCTCCTTTTTTCCTGTTTGCTTGTTTTGAGACAGGGTTTCT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCCGTCTCCTTTTTTCCTGTTTGCTTGTTTTGAGACAGGGTTTCT  849

seq1  CACTGAGCCTGGAACTCACTGTTTCACACAGGCTGGTCGGCCATCGTGGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCTGGAACTCACTGTTTCACACAGGCTGGTCGGCCATCGTGGG  899

seq1  AGCGGCCCAGGACTGGAGTTACAGGTGTGTGCTGCTGTGTCTCTCTGTGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCCCAGGACTGGAGTTACAGGTGTGTGCTGCTGTGTCTCTCTGTGA  949

seq1  ACGTGAGTGTGGAGATCTGAACCCAGCCCTTCACACTTGCACAGACAGCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGTGTGGAGATCTGAACCCAGCCCTTCACACTTGCACAGACAGCA  999

seq1  CTTTACCCACTGAGCTATCTTGCCAGTCCCCAAAGCAGTATTTCTTTTTA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCACTGAGCTATCTTGCCAGTCCCCAAAGCAGTATTTCTTTTTA  1049

seq1  AGATTTATTTTTATTATTTTAACTCTGTGTGTGTGTTACAGGGGACGAGC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTTTATTATTTTAACTCTGTGTGTGTGTTACAGGGGACGAGC  1099

seq1  ACCCAGGTGCCCAGGGAGGCTAGAAGGTGTCAGAATTC  1125
      ||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTGCCCAGGGAGGCTAGAAGGTGTCAGAATTC  1137