BAC Information

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BAC

Clone NameB6Ng01-260N08
Chromosome1 (Build37)
Map Location 39,858,873 - 39,959,046
singlet/doubletdoublet
Overlap geneLOC100042065, Map4k4
Upstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik
Downstream geneIl1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260N08.bB6Ng01-260N08.g
ACCGA065657GA065658
length676104
definitionB6Ng01-260N08.b B6Ng01-260N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,958,371 - 39,959,046)(39,858,873 - 39,858,976)
sequence
gaattcacattttataatccccacactgtaattcctcctgttcccgtggc
ccaaaagcacactcccccgcccgcttccccaagatactgtccactagaac
agggtatgctggccaagctttaaaatcagtaccaggtaacgctagcctcc
ccaagttggagcctacggcaagcactccgaaggcagaagcacgatgacat
gtctcaagaataccaaggcagtggctgagtggagtcataggcaaggcctg
tctacaccgaattttaattcacggacaaacgcaaacgcatgaaggccaga
tttggaggaaagggggtttggggggagaccctgtggtcaccctcgaacac
aaaattccttttctattttgctaaagccaagtgcatgcctaacagtgtag
cttatttcctttatctcaaagccaggaaatgaggtcttttaaggccagtc
tgaacacaggcaaaaaaacaaaaaagaaaaagaaaaaaaaagaaaagcca
ggcgaaaccccctttcccaactttggccaggcggcacggcctgcagtcag
cagcgtttcgtcaccctttccctcgtcccctaagaagtttctccacgcca
cggggaacaaaggcgccccacaccgaccttatagacttgtccataggtgc
catttcgaaccacttccaccagctca
accttctgactggaggccccacagcacattgtgaccatgattgcagtcta
gagccttaatgttaaagctaagagagttgttcctgggggtgggtgagggg
gtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39958371_39959046
seq2: B6Ng01-260N08.b_46_721 (reverse)

seq1  TGAGCTGGTGGAAGTGGTTGGAAATGGCACCTATGGACAAGTCTATAAGG  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGCTGGTGGAAGTGGTTCGAAATGGCACCTATGGACAAGTCTATAAGG  50

seq1  TCGGTGTGGGGCGCCTTTGTTCCCCGTGGCGTGGAGAAACTTCTTAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTGGGGCGCCTTTGTTCCCCGTGGCGTGGAGAAACTTCTTAGGGG  100

seq1  ACGAGGGAAAGGGTGACGAAACGCTGCTGACTGCAGGCCGTGCCGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGAAAGGGTGACGAAACGCTGCTGACTGCAGGCCGTGCCGCCTGG  150

seq1  CCAAAGTTGGGAAAGGGGGTTTCGCCTGGCTTTTCTTTTTTTTTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTGGGAAAGGGGGTTTCGCCTGGCTTTTCTTTTTTTTTCTTTTT  200

seq1  CTTTTTTGTTTTTTTGCCTGTGTTCAGACTGGCCTTAAAAGACCTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGTTTTTTTGCCTGTGTTCAGACTGGCCTTAAAAGACCTCATTT  250

seq1  CCTGGCTTTGAGATAAAGGAAATAAGCTACACTGTTAGGCATGCACTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTTGAGATAAAGGAAATAAGCTACACTGTTAGGCATGCACTTGG  300

seq1  CTTTAGCAAAATAGAAAAGGAATTTTGTGTTCGAGGGTGACCACAGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCAAAATAGAAAAGGAATTTTGTGTTCGAGGGTGACCACAGGGTC  350

seq1  TCCCCCCAAACCCCCTTTCCTCCAAATCTGGCCTTCATGCGTTTGCGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCAAACCCCCTTTCCTCCAAATCTGGCCTTCATGCGTTTGCGTTT  400

seq1  GTCCGTGAATTAAAATTCGGTGTAGACAGGCCTTGCCTATGACTCCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTGAATTAAAATTCGGTGTAGACAGGCCTTGCCTATGACTCCACTC  450

seq1  AGCCACTGCCTTGGTATTCTTGAGACATGTCATCGTGCTTCTGCCTTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGCCTTGGTATTCTTGAGACATGTCATCGTGCTTCTGCCTTCGG  500

seq1  AGTGCTTGCCGTAGGCTCCAACTTGGGGAGGCTAGCGTTACCTGGTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGCCGTAGGCTCCAACTTGGGGAGGCTAGCGTTACCTGGTACTG  550

seq1  ATTTTAAAGCTTGGCCAGCATACCCTGTTCTAGTGGACAGTATCTTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCTTGGCCAGCATACCCTGTTCTAGTGGACAGTATCTTGGGG  600

seq1  AAGCGGGCGGGGGAGTGTGCTTTTGGGCCACGGGAACAGGAGGAATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGGCGGGGGAGTGTGCTTTTGGGCCACGGGAACAGGAGGAATTACA  650

seq1  GTGTGGGGATTATAAAATGTGAATTC  676
      ||||||||||||||||||||||||||
seq2  GTGTGGGGATTATAAAATGTGAATTC  676

seq1: chr1_39858873_39858976
seq2: B6Ng01-260N08.g_71_174

seq1  ACCTTCTGACTGGAGGCCCCACAGCACATTGTGACCATGATTGCAGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGACTGGAGGCCCCACAGCACATTGTGACCATGATTGCAGTCTA  50

seq1  GAGCCTTAATGTTAAAGCTAAGAGAGTTGTTCCTGGGGGTGGGTGAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTAATGTTAAAGCTAAGAGAGTTGTTCCTGGGGGTGGGTGAGGGG  100

seq1  GTGG  104
      ||||
seq2  GTGG  104