BAC Information

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BAC

Clone NameB6Ng01-261C21
Chromosome1 (Build37)
Map Location 50,373,126 - 50,374,264
singlet/doubletsinglet
Overlap genenone
Upstream geneC230029F24Rik, LOC627430, LOC100041981, EG666962, EG666970
Downstream geneLOC100041993, Tmeff2, Sdpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261C21.bB6Ng01-261C21.g
ACCGA065913GA065914
length1,2261,130
definitionB6Ng01-261C21.b B6Ng01-261C21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaattctgaatatctatgctccaaatacaagggcagccacatt
cattaaagaaactttagtaaagcacaaagcacacattgcactgcacacta
taatagtaggagtcttcaacacgccacactcatcaaaggacagatcatgg
aaacaaacaaaacagagacacattgaaactaacagaagttatgaaacaaa
tggatttaacagatatctatagaatattttatcctaaaaccaaaggatat
accttcttctcagcacctcatggtaccttccccaaaattgaccatataat
caatccggaaacaaaacaggcctctacagatacaataatattgaaataat
cccatgcattttgcaacttgcaaagggcaattagcaaattcatctggaat
aacaacaacaacaacaacaacaacaacaacaacaacaaaacttgcatagc
aaaaactacactcatcaataacataacctctggtaggatcaccatccctg
acctcaagctgtactacagaacaattgtgataaaaactacattgtactgg
tacaatgacaggcaggtagaaatagaattgaagacctagaaatgaaccca
catacctatggtcacttgatctttgacaaagaagctaaaataatccagtg
gaaaaaagacactattttcaacaaatggagctggctcaactggcagttac
catgtagaacaatatgaattgatacattcttatttctttatacaaagctc
aagtctaagttgatcaagaacctccacataaaaccagagacactgaaact
tatagagaagtaagtggggaagagcctcgaacaaatggcacaggggaaac
attcctgaacagaacaccaatggcttgtactctaagttcaagaattaaca
aatgggacctcataaaattgcaaagcttctataagcaaaggacactgtca
ataagacataaaggcaactaacagattaggatagctctttaccaatccta
tattcatagagggctactatccaatatatacaaagaactcagatgttaga
ctccagaaaccaaataccctattaaaatggggttacagagcttaccaaag
aatcccaggtgtgagctggactgggctaggacacctaaaaatgttcacac
attctttagtctatcagattgcaataaacgacctgagattcacgttcaat
tcagtccaaatggtttaagaatctca
gaattcattggtactgggcttcacaactctgctgtatattgattggtatt
cattaatattctctgtctgtttcaaagagctttataattggatttaagac
ccactgaaaaagagaaaaccatgtctgtgagtggaaactaggaaaatagt
taatgttaagtcatggtttttagcggagaatcgaccaccactactttact
aaatagtcatagtctctaacattttaaacatttgtccttatacccataga
taaatgtagtcctttccctcatcaaaaatacaccccaccctcttagttta
tgtgtgtcctggcccttaagttcaaatatctatagaggacaaaatcatta
gattccactggagctagagacacagacaagtgtagttactgacgtggctg
ctatgtgtgttcagaacatgttcttatctgctgaactccctgtatagtcc
ttctctatataattattaaccctattacctctggttttaatttgctcacc
ttgggtattttctttggagttttatcatgttttcctggtgcataacttct
cctccgtttttgagaacacagagaagatctatgccaaaagtctgcattat
ttaaggcattaagttattgtgttttgatttttactatttctttttaaaag
tttacttttattctttaaaattttcatgcattaatataaattatttggat
atatttctctactctatatttccaaatacttcgggacccagcagcacatc
tctacccatcttcatgttctcatttcatttattatttatagtattctaat
ctgggttttttctggctcctgcttattataaataaaggctgttatgaaca
tagtggagcatgtgcccttattacatgttacagcatcttctgggtatatg
cccacgagtggtatagctggatcctcagtagtattatgttcaattttctg
aggaactgccaactgatttccagagtggtgaccagcttttaatcccacca
gcatggagaagtgttctttttccacacatcgtgctagcatctgctatcac
ttgagtttttgaatctagcatctgactggtgtgaggtgaatctcaatggt
tgtttgaatttgcatttcctgatgactacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50373126_50374264
seq2: B6Ng01-261C21.g_64_1193 (reverse)

seq1  CGTAGTCATCAGGGAAATGCAAATCAAAACAACCA-TGAGATTCCACCTC  49
      ||||||||||| ||||||||||||  ||||||||| ||||||| ||||||
seq2  CGTAGTCATCA-GGAAATGCAAATTCAAACAACCATTGAGATT-CACCTC  48

seq1  ACACCAGTCAGAATTGCTAAGATCAAAAACTCAAGTGATAGCAGATGCTA  99
      ||||||||||||  |||||   ||||||||||||||||||||||||||||
seq2  ACACCAGTCAGA--TGCTAGATTCAAAAACTCAAGTGATAGCAGATGCTA  96

seq1  GCAAGGATGTGTGGAAAAAGGAACACTTCTCCATTGCTGGTGGGATTAAA  149
      || | |||||||||||||| ||||||||||||| ||||||||||||||||
seq2  GC-ACGATGTGTGGAAAAA-GAACACTTCTCCA-TGCTGGTGGGATTAAA  143

seq1  AGCTGGTTCAACCACTCTGGAAATCAGTTTGGCAGTTCCTCAGAAAATTG  199
      |||||||   ||||||||||||||||| ||||||||||||||||||||||
seq2  AGCTGGT--CACCACTCTGGAAATCAG-TTGGCAGTTCCTCAGAAAATTG  190

seq1  AACATAATACTACCTGAGGATCCAGCTATACCACTCGTGGGCATATACCC  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACATAATACTA-CTGAGGATCCAGCTATACCACTCGTGGGCATATACCC  239

seq1  AGAAGATGCTGTAACATGTAATAAGGGCACATGCTCCACTATGTTCATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGCTGTAACATGTAATAAGGGCACATGCTCCACTATGTTCATAA  289

seq1  CAGCC-TTATTTATAATAAGCAGGAGCCAGAAAAAACCCAGATTAGAATA  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTATTTATAATAAGCAGGAGCCAGAAAAAACCCAGATTAGAATA  339

seq1  CTATAAATAATAAATGAAATGAGAACATGAAGATGGGTAGAGATGTGCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATAATAAATGAAATGAGAACATGAAGATGGGTAGAGATGTGCTG  389

seq1  CTGGGTCCCGAAGTATTTGGAAATATAGAGTAGAGAAATATATCCAAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCCGAAGTATTTGGAAATATAGAGTAGAGAAATATATCCAAATA  439

seq1  ATTTATATTAATGCATGAAAATTTTAAAGAATAAAAGTAAACTTTTAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTAATGCATGAAAATTTTAAAGAATAAAAGTAAACTTTTAAAA  489

seq1  AGAAATAGTAAAAATCAAAACACAATAACTTAATGCCTTAAATAATGCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGTAAAAATCAAAACACAATAACTTAATGCCTTAAATAATGCAG  539

seq1  ACTTTTGGCATAGATCTTCTCTGTGTTCTCAAAAACGGAGGAGAAGTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGCATAGATCTTCTCTGTGTTCTCAAAAACGGAGGAGAAGTTAT  589

seq1  GCACCAGGAAAACATGATAAAACTCCAAAGAAAATACCCAAGGTGAGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGAAAACATGATAAAACTCCAAAGAAAATACCCAAGGTGAGCAA  639

seq1  ATTAAAACCAGAGGTAATAGGGTTAATAATTATATAGAGAAGGACTATAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACCAGAGGTAATAGGGTTAATAATTATATAGAGAAGGACTATAC  689

seq1  AGGGAGTTCAGCAGATAAGAACATGTTCTGAACACACATAGCAGCCACGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTCAGCAGATAAGAACATGTTCTGAACACACATAGCAGCCACGT  739

seq1  CAGTAACTACACTTGTCTGTGTCTCTAGCTCCAGTGGAATCTAATGATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTACACTTGTCTGTGTCTCTAGCTCCAGTGGAATCTAATGATTT  789

seq1  TGTCCTCTATAGATATTTGAACTTAAGGGCCAGGACACACATAAACTAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTATAGATATTTGAACTTAAGGGCCAGGACACACATAAACTAAG  839

seq1  AGGGTGGGGTGTATTTTTGATGAGGGAAAGGACTACATTTATCTATGGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGGTGTATTTTTGATGAGGGAAAGGACTACATTTATCTATGGGT  889

seq1  ATAAGGACAAATGTTTAAAATGTTAGAGACTATGACTATTTAGTAAAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACAAATGTTTAAAATGTTAGAGACTATGACTATTTAGTAAAGTA  939

seq1  GTGGTGGTCGATTCTCCGCTAAAAACCATGACTTAACATTAACTATTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTCGATTCTCCGCTAAAAACCATGACTTAACATTAACTATTTTC  989

seq1  CTAGTTTCCACTCACAGACATGGTTTTCTCTTTTTCAGTGGGTCTTAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCCACTCACAGACATGGTTTTCTCTTTTTCAGTGGGTCTTAAAT  1039

seq1  CCAATTATAAAGCTCTTTGAAACAGACAGAGAATATTAATGAATACCAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATAAAGCTCTTTGAAACAGACAGAGAATATTAATGAATACCAAT  1089

seq1  CAATATACAGCAGAGTTGTGAAGCCCAGTACCAATGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACAGCAGAGTTGTGAAGCCCAGTACCAATGAATTC  1130