BAC Information

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BAC

Clone NameB6Ng01-261G13
Chromosome1 (Build37)
Map Location 104,737,096 - 104,922,021
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261G13.bB6Ng01-261G13.g
ACCGA066086GA066087
length1,1541,112
definitionB6Ng01-261G13.b B6Ng01-261G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,737,096 - 104,738,255)(104,920,926 - 104,922,021)
sequence
gaattcttcagtcattgggactgaataaacctttcttacttttttgtttt
ttgtttgtttttttttttcttccttcctagtattatttgcattttcttgg
tctccagaacctctgtttctgtgagctcatgtagctggtgcattatggat
atctttctctgagcttattcctgtgtagaaggtagaggagaaaatttgag
actttgttgaatttcagctccaatttgttatactatgtgggaagtcacca
atatcatgcttcccagggaggtctgttgcttctcacacatgacacaggtc
atcctacaagacaatccatttagttccattgactgaaccatttgtctctt
aatcacttctctatcaatttcactattttcccaactgtaattattgggaa
aaaacttccaattcatagaaattatccatgcagtgtccattaggagtctc
taaatcacttctctacctttccactagttccccaaaagtgtgtaaaagtt
ttttttattgggaaaaacatccagttcgtagaaattagccataaagagtc
cattaggagagaaactacaaagaacaatctgtagagatcactttactcct
gggagaacagactgtccagtagcaatgctacatataagaaacagagaaag
ggaattctctgacctgggaaaggggaaattagacatgttcaggatatcag
aattatctctgacatctgcataaatagttgaacatcgctattgtgttcct
gcttagtgtaaaggtgtctttcctattagagtttaatttcaccactttct
gcccttcagctgtcttctccactgtactttcgttctcttctcctgtccat
gatatttttccttattcctattccatggctctctccttttcttccttccc
tcctctccttgattatttcccttttattgagtgatggttttacatattgt
ggcctagctactattgttttacagatttctcactcaaatgccacatctag
aaagcagagtctcagaaagcctttgggcattttgtacaggaacatttaac
ccatgactaatgacctttataggtctgaatttatactttaacactcaggc
caatttgcatatctcataggtacatcctcctttagttcgaaaatatctcc
tcaa
gaattcattatctcccactttggttgtctctaaacctgtgtctgcctcag
ggatctaggtaaattgctccttgagtctggagcagaattacagtttcatt
tgcatcactttaatttaaaatgcataactgatctctcctttgtgctcaga
tgtaggatatgagctctggatttaggcaaatctgattttgaaccctactt
cttggtaattttgtaattttgagtagaacttcatgactctggccaataga
accagtgtctaccagatatttttaaagcctacatcagactcagtgggctg
ttttacatggactcctagcattccatacatgggaaaagtgcacaagaaag
gctatttaaatacttacataataaaattatttgaatcccctaagtcatct
tttcttccctcaaatgtaaaatgctaagagtactgtgatattcacactgc
ttaaccagggtgataataaagcaaatgaagtacaggcttggaagaataag
aatctctgctctatcctcagaaacagcattaaaaatggcatttttagtgg
tgcttactgataatcacagcagtggggagaaagaccagtggaaacatggg
gctcaatgaggggctcctttgtgatctcagcctagtgagacctctgcctc
aatacaataaacaaggtagataatgtctgagaaatggcacctgaagttgt
tcctcttatttataggtgtacacaaccaatcccacaagtacatgcataca
agcaaaaatgcactaatgctgttcacatgtctagttgtatttctcagagg
acaatagcatctgtcgattttagagactaaggaactacttggtgttatga
gaaggaactgaggtcgcaaggatggtttctagattgttgattattcctct
gctcttgattgcttcaggatagaagaaatctttctcctattctgatggtt
actgtcattttgcacaatggtcagtgacagctttctcctggattccacat
atctgggcctgttgctaatagccatgggtgctttaagtgttggagttaat
aaatcactgtgtgctggtgtcattgacattttcctcactgcagtgaaata
ttggtttttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104737096_104738255
seq2: B6Ng01-261G13.b_44_1197

seq1  GAATTCTTCAGTCATTGGGACTGAATAAACCTTTCTTACTTTTTTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTCATTGGGACTGAATAAACCTTTCTTACTTTTTTGTTTT  50

seq1  TTGTTTGTTTTTTTTTTTCTTCCTTCCTAGTATTATTTGCATTTTCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTTTTTTCTTCCTTCCTAGTATTATTTGCATTTTCTTGG  100

seq1  TCTCCAGAACCTCTGTTTCTGTGAGCTCATGTAGCTGGTGCATTATGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAACCTCTGTTTCTGTGAGCTCATGTAGCTGGTGCATTATGGAT  150

seq1  ATCTTTCTCTGAGCTTATTCCTGTGTAGAAGGTAGAGGAGAAAATTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCTGAGCTTATTCCTGTGTAGAAGGTAGAGGAGAAAATTTGAG  200

seq1  ACTTTGTTGAATTTCAGCTCCAATTTGTTATACTATGTGGGAAGTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTGAATTTCAGCTCCAATTTGTTATACTATGTGGGAAGTCACCA  250

seq1  ATATCATGCTTCCCAGGGAGGTCTGTTGCTTCTCACACATGACACAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGCTTCCCAGGGAGGTCTGTTGCTTCTCACACATGACACAGGTC  300

seq1  ATCCTACAAGACAATCCATTTAGTTCCATTGACTGAACCATTTGTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACAAGACAATCCATTTAGTTCCATTGACTGAACCATTTGTCTCTT  350

seq1  AATCACTTCTCTATCAATTTCACTATTTTCCCAACTGTAATTATTGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTCTCTATCAATTTCACTATTTTCCCAACTGTAATTATTGGGAA  400

seq1  AAAACTTCCAATTCATAGAAATTATCCATGCAGTGTCCATTAGGAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTCCAATTCATAGAAATTATCCATGCAGTGTCCATTAGGAGTCTC  450

seq1  TAAATCACTTCTCTACCTTTCCACTAGTTCCCCAAAAGTGTGTAAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCACTTCTCTACCTTTCCACTAGTTCCCCAAAAGTGTGTAAAAGTT  500

seq1  TTTTTTATTGGGAAAAACATCCAGTTCGTAGAAATTAGCCATAAAGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTGGGAAAAACATCCAGTTCGTAGAAATTAGCCATAAAGAGTC  550

seq1  CATTAGGAGAGAAACTACAAAGAACAATCTGTAGAGATCACTTTACTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGAGAGAAACTACAAAGAACAATCTGTAGAGATCACTTTACTCCT  600

seq1  GGGAGAACAGACTGTCCAGTAGCAATGCTACATATAAGAAACAGAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAACAGACTGTCCAGTAGCAATGCTACATATAAGAAACAGAGAAAG  650

seq1  GGAATTCTCTGACCTGGGAAAGGGGAAATTAGACATGTTCAGGATATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTCTGACCTGGGAAAGGGGAAATTAGACATGTTCAGGATATCAG  700

seq1  AATTATCTCTGACATCTGCATAAATAGTTGAACATCGCTATTGTGTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTCTGACATCTGCATAAATAGTTGAACATCGCTATTGTGTTCCT  750

seq1  GCTTAGTGTAAAGGTGTCTTTCCTATTAGAGTTTAATTTCACCACTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGTAAAGGTGTCTTTCCTATTAGAGTTTAATTTCACCACTTTCT  800

seq1  GCCCTTCAGCTGTCTTCTCCACTGTACTTTCGTTCTCTTCTCCTGTCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCAGCTGTCTTCTCCACTGTACTTTCGTTCTCTTCTCCTGTCCAT  850

seq1  GATATTTTTCCTTATTCCTATTCCATGGCTCTCTCCTTTTCTTCCTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTTCCTTATTCCTATTCCATGGCTCTCTCCTTTTCTTCCTTCCC  900

seq1  TCCTCTCCTTGATTAATTTCCCTTTTATTGAGTGATGGTTTTACATATTG  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTTGATT-ATTTCCCTTTTATTGAGTGATGGTTTTACATATTG  949

seq1  TGGCCTAAGCTACTA-TGTTTTACAGATTTCTCACTCAAATGCCACATCT  999
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGCCT-AGCTACTATTGTTTTACAGATTTCTCACTCAAATGCCACATCT  998

seq1  AGAAAAGCAGAGTCTCAGGAAAGCTTTGGGCATTTTGTACA-GAACA-TT  1047
      || ||||||||||||||| ||  |||||||||||||||||| ||||| ||
seq2  AG-AAAGCAGAGTCTCAGAAAGCCTTTGGGCATTTTGTACAGGAACATTT  1047

seq1  AACCAATGACTAATGAACTTTATAAGGTCTAGAAATTTTATCTTAAACAC  1097
      |||| ||||||||||| |||||| |||||| ||| || || ||| |||||
seq2  AACCCATGACTAATGACCTTTAT-AGGTCT-GAATTTATA-CTTTAACAC  1094

seq1  TCAGGCCAATTTGCATTTATCTCTATGTTACATCCTTCCTTATGCTGAAA  1147
      |||||||||||||||  ||||||   | |||||||| | |||    ||||
seq2  TCAGGCCAATTTGCA--TATCTCATAGGTACATCCTCCTTTAGTTCGAAA  1142

seq1  ATATTTTCCTCAA  1160
      ||| | |||||||
seq2  ATA-TCTCCTCAA  1154

seq1: chr1_104920926_104922021
seq2: B6Ng01-261G13.g_69_1180 (reverse)

seq1  AGCAAAAACCAATA--TCACTGCAGTGAG--AAATGTCAATGACA-CAG-  44
      ||||||||||||||  |||||||||||||  |||||||||||||| ||| 
seq2  AGCAAAAACCAATATTTCACTGCAGTGAGGAAAATGTCAATGACACCAGC  50

seq1  -CACAGTGATTTA-TAACTCC-ACACCT-AAGCACCCATGGCTATTAGCA  90
       |||||||||||| ||||||| |||| | |||||||||||||||||||||
seq2  ACACAGTGATTTATTAACTCCAACACTTAAAGCACCCATGGCTATTAGCA  100

seq1  ACA-GACCAGATATGTGGAATCCAGGAGAAAGCTTGTCACTGA-CATTGT  138
      ||| | ||||||||||||||||||||||||||| ||||||||| ||||||
seq2  ACAGGCCCAGATATGTGGAATCCAGGAGAAAGC-TGTCACTGACCATTGT  149

seq1  GCAAAATGACAGTAA-CATCAGAATAGGAG-AAGATTTC-TCTATCCTGA  185
      ||||||||||||||| |||||||||||||| |||||||| ||||||||||
seq2  GCAAAATGACAGTAACCATCAGAATAGGAGAAAGATTTCTTCTATCCTGA  199

seq1  AGCAATC-AGAGCAGAGGAATAATCAACAATCTAGAAACCATCCTTGCGA  234
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCAAGAGCAGAGGAATAATCAACAATCTAGAAACCATCCTTGCGA  249

seq1  CCTCAGTTCCTTCTCATAACACCAAGTAGTTCCTTAGTCTCTAAAATCGA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTCCTTCTCATAACACCAAGTAGTTCCTTAGTCTCTAAAATCGA  299

seq1  CAGATGCTATTGTCCTCTGAG-AATACAACTAGACATGTGAACAGCATTA  333
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGATGCTATTGTCCTCTGAGAAATACAACTAGACATGTGAACAGCATTA  349

seq1  GTGCATTTTTGCTTGTATGCATGTACTTGTGGGATTGGTTGTGTACACCT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTTTGCTTGTATGCATGTACTTGTGGGATTGGTTGTGTACACCT  399

seq1  ATAAATAAGAGGAACAACTTCAGGTGCCATTTCTCAGACATTATCTACCT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAGAGGAACAACTTCAGGTGCCATTTCTCAGACATTATCTACCT  449

seq1  TGTTTATTGTATTGAGGCAGAGGTCTCACTAGGCTGAGATCACAAAGGAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTGTATTGAGGCAGAGGTCTCACTAGGCTGAGATCACAAAGGAG  499

seq1  CCCCTCATTGAGCCCCATGTTTCCACTGGTCTTTCTCCCCACTGCTGTGA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCATTGAGCCCCATGTTTCCACTGGTCTTTCTCCCCACTGCTGTGA  549

seq1  TTATCAGTAAGCACCACTAAAAATGCCATTTTTAATGCTGTTTCTGAGGA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTAAGCACCACTAAAAATGCCATTTTTAATGCTGTTTCTGAGGA  599

seq1  TAGAGCAGAGATTCTTATTCTTCCAAGCCTGTACTTCATTTGCTTTATTA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGAGATTCTTATTCTTCCAAGCCTGTACTTCATTTGCTTTATTA  649

seq1  TCACCCTGGTTAAGCAGTGTGAATATCACAGTACTCTTAGCATTTTACAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGGTTAAGCAGTGTGAATATCACAGTACTCTTAGCATTTTACAT  699

seq1  TTGAGGGAAGAAAAGATGACTTAGGGGATTCAAATAATTTTATTATGTAA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGAAGAAAAGATGACTTAGGGGATTCAAATAATTTTATTATGTAA  749

seq1  GTATTTAAATAGCCTTTCTTGTGCACTTTTCCCATGTATGGAATGCTAGG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAATAGCCTTTCTTGTGCACTTTTCCCATGTATGGAATGCTAGG  799

seq1  AGTCCATGTAAAACAGCCCACTGAGTCTGATGTAGGCTTTAAAAATATCT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGTAAAACAGCCCACTGAGTCTGATGTAGGCTTTAAAAATATCT  849

seq1  GGTAGACACTGGTTCTATTGGCCAGAGTCATGAAGTTCTACTCAAAATTA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACACTGGTTCTATTGGCCAGAGTCATGAAGTTCTACTCAAAATTA  899

seq1  CAAAATTACCAAGAAGTAGGGTTCAAAATCAGATTTGCCTAAATCCAGAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTACCAAGAAGTAGGGTTCAAAATCAGATTTGCCTAAATCCAGAG  949

seq1  CTCATATCCTACATCTGAGCACAAAGGAGAGATCAGTTATGCATTTTAAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCCTACATCTGAGCACAAAGGAGAGATCAGTTATGCATTTTAAA  999

seq1  TTAAAGTGATGCAAATGAAACTGTAATTCTGCTCCAGACTCAAGGAGCAA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGATGCAAATGAAACTGTAATTCTGCTCCAGACTCAAGGAGCAA  1049

seq1  TTTACCTAGATCCCTGAGGCAGACACAGGTTTAGAGACAACCAAAGTGGG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTAGATCCCTGAGGCAGACACAGGTTTAGAGACAACCAAAGTGGG  1099

seq1  AGATAATGAATTC  1096
      |||||||||||||
seq2  AGATAATGAATTC  1112