BAC Information

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BAC

Clone NameB6Ng01-261L01
Chromosome1 (Build37)
Map Location 135,627,429 - 135,812,794
singlet/doubletdoublet
Overlap geneAtp2b4, Optc, Prelp
Upstream geneNfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1
Downstream geneLOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261L01.bB6Ng01-261L01.g
ACCGA066295GA066296
length324277
definitionB6Ng01-261L01.b B6Ng01-261L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,812,471 - 135,812,794)(135,627,429 - 135,627,705)
sequence
ttggcacggctcatgctggcaaagacaggcagtccctgggccaagtgcag
gggaggggacagagcaagggtgagtgggtgagcgctggtatctgagcagt
tcccttccaggacacctcctgcctttttgtcccgtgctcactgtcagtct
cctggcctcttcaagccacttctccacccccccccagccacagtgggagc
tggacatggtgggtggactgtagaccatttatagcaatgaaatgttttcc
tcttttcttcaaatgctgtgtctaaccaccctcgtgtgtgcgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtg
cctggttctgggaaatgaataattaaatctgggtaagtgcaactctgctg
tagacactgccatatgtttaccccgaacatgttcagtcaggaacaggaaa
cagaatgcaggatggcagctcagacgatgaatgatagagggtatggtggg
ttgagcctgcatggcccccacacgctcatatatttgaatactaggtcctc
agttggcagaactgtttgggaaggattgggggtaagccctagttggagta
ggtatgtcaatgggtgttggggggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135812471_135812794
seq2: B6Ng01-261L01.b_49_372 (reverse)

seq1  CAAACACACACACACACACACACACACACACACGCACACACGAGGGTGGT  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACGCACACACGAGGGTGGT  50

seq1  TAGACACAGCATTTGAAGAAAAGAGGAAAACATTTCATTGCTATAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACAGCATTTGAAGAAAAGAGGAAAACATTTCATTGCTATAAATGG  100

seq1  TCTACAGTCCACCCACCATGTCCAGCTCCCACTGTGGCTGGGGGGGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGTCCACCCACCATGTCCAGCTCCCACTGTGGCTGGGGGGGGGTG  150

seq1  GAGAAGTGGCTTGAAGAGGCCAGGAGACTGACAGTGAGCACGGGACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGGCTTGAAGAGGCCAGGAGACTGACAGTGAGCACGGGACAAAA  200

seq1  AGGCAGGAGGTGTCCTGGAAGGGAACTGCTCAGATACCAGCGCTCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGGTGTCCTGGAAGGGAACTGCTCAGATACCAGCGCTCACCCA  250

seq1  CTCACCCTTGCTCTGTCCCCTCCCCTGCACTTGGCCCAGGGACTGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCTTGCTCTGTCCCCTCCCCTGCACTTGGCCCAGGGACTGCCTGT  300

seq1  CTTTGCCAGCATGAGCCGTGCCAA  324
      ||||||||||||||||||||||||
seq2  CTTTGCCAGCATGAGCCGTGCCAA  324

seq1: chr1_135627429_135627705
seq2: B6Ng01-261L01.g_74_350

seq1  CCTGGTTCTGGGAAATGAATAATTAAATCTGGGTAAGTGCAACTCTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTCTGGGAAATGAATAATTAAATCTGGGTAAGTGCAACTCTGCTG  50

seq1  TAGACACTGCCATATGTTTACCCCGAACATGTTCAGTCAGGAACAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTGCCATATGTTTACCCCGAACATGTTCAGTCAGGAACAGGAAA  100

seq1  CAGAATGCAGGATGGCAGCTCAGACGATGAATGATAGAGGGTATGGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGCAGGATGGCAGCTCAGACGATGAATGATAGAGGGTATGGTGGG  150

seq1  TTGAGCCTGCATGGCCCCCACACGCTCATATATTTGAATACTAGGTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCTGCATGGCCCCCACACGCTCATATATTTGAATACTAGGTCCTC  200

seq1  AGTTGGCAGAACTGTTTGGGAAGGATTGGGGGTAAGCCCTAGTTGGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCAGAACTGTTTGGGAAGGATTGGGGGTAAGCCCTAGTTGGAGTA  250

seq1  GGTATGTCAATGGGTGTTGGGGGGTCT  277
      |||||||||||||||||||||||||||
seq2  GGTATGTCAATGGGTGTTGGGGGGTCT  277