BAC Information

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BAC

Clone NameB6Ng01-262D03
Chromosome1 (Build37)
Map Location 64,985,650 - 65,128,045
singlet/doubletdoublet
Overlap gene9430067K14Rik, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb
Upstream geneOTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, LOC667245
Downstream geneLOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262D03.bB6Ng01-262D03.g
ACCGA066675GA066676
length1,1351,140
definitionB6Ng01-262D03.b B6Ng01-262D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,985,650 - 64,986,789)(65,126,923 - 65,128,045)
sequence
gaattctccatgtttcctggaaaacgatgtcaagtgccacactccctggc
tgccatgtttgcctcagagtacagcagactgtcctgcctagaactaaagg
cctggggattatgagctcatgagtgagtggggatccaggcaaaggcctat
ggcaaaaatatggcccaagtagcaggctttaggtcatcacttcttccctc
tggacctgaggtacctcatggcgccacctgaacaggaagaaggctacgtg
agcactaacccactctctctggaaaatgctaggcctccagagtcaggtac
aattagagcagaccttgagtatgacacaatccaatacagtaaacagcagc
catatatggctatttcaattcagtcacactggctgcatttcaggtgccca
caagtcacatatacctgtgtgtctttaacaaaagatagaataaaattagg
taacatttttttttcttctttactgcttataagtaggtaaaactaacaat
tagtaatacatcactgaaaaagcagagaaacatgcttttttttttttcaa
aaactttataactaatcaattttcagctgctaggccattaaaccaatata
tttaaatcaacagcactgcactatgctgtttaatatatgtaagtgaaact
aatacacacaaactttccttatctatttaccaagctcaactcaaccccac
tctaaaactgaaaacgccctgactgctgggtccctggccttcgcctccca
agcactgcagcttaggcattcactaccacacttgattgtaggtggtgccg
ggggatcaaacccagagctttgtacatgccaagcaaacactccaccaact
gaaccatacccccagaccaaagtctgtcctttagctgcatcaatggtgta
tacagatcatagaaactgtggtcagcttctcttataaagaggtggtaact
atgaacttgacgacttctatatgttgaccatgaattgcatagacgtcata
caatgtttccaatgtttctagctgcaaacagagttaaggcttgttttatc
ttttctgagtctcctagtaagccctcaggtctttgatctgaaacctagtt
tcagttattctaaattgaatgggattttttttcca
gaattcaaggccagcctgagccatccgctttgtagaaaaccataccacct
tgaatgccctgatctcatctaaaaacatgttggcttgcttggccttgcaa
ttctttctactcgattttttccccatcttctgcttcttattcatatgtag
tgggcagtacctattggctcccttggaggaatacaccagcaaaagggtta
aaaccaaagttcaagattcatgctttctaaagcacgaccataatagcatc
ctaggcaggtggagtgtgggaggggtgagacaagatgaagtttaaccctc
acagggaagggtcagtgggcatgcaggaagccaggggaaggggctgattt
ggactgaaactgagacttagaaagagaaaccagggaaacacagcacctta
tatatcacaggggctcagtctcctgctctagagatacgtggaccaatgca
caggttttgcagagaatcgctgaaggttgataccttttcaacacgggaga
catatcaaaacgctacccttctggtaactttctgatttcctctcctgcaa
agagctgtccaaacaagcacaaagacagtatgctgagttttactttaagc
atttttaaactacgtgtgataagctttattttaagcaactttgaattgcc
agagactatgggctggtagctaggcatggagaagcctgggtgctgttcct
tgattggccattgacaccctaagattcttcaggtgacacccgaggcttta
gagacttctgagctctgtaccgagcttgttctgaatgcagacttggactt
gggatttagaggctgaagatactgagacaggaaacttggcttctacttgt
attcagttgcttttcttcttctgtctgcccccctccccaaccccttcccc
cagcactctggcacttactagaatgaggatctacgaaaaagatgactctc
agaggacaaaatggtcagaagatcacagacgattgtctcctctcttcaga
tcgcttccacttcagtgaaatccacctcccttccaatgtgatggatggcc
tgctgggttctctaatgaaaatgcctagactacgaggacagccagtaccc
atgcctagtgtcggcgaaataacagaaaatatatcttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_64985650_64986789
seq2: B6Ng01-262D03.b_43_1177

seq1  GAATTCTCCATGTTTCCTGGAAAACGATGTCAAGTGCCACACTCCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGTTTCCTGGAAAACGATGTCAAGTGCCACACTCCCTGGC  50

seq1  TGCCATGTTTGCCTCAGAGTACAGCAGACTGTCCTGCCTAGAACTAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTTTGCCTCAGAGTACAGCAGACTGTCCTGCCTAGAACTAAAGG  100

seq1  CCTGGGGATTATGAGCTCATGAGTGAGTGGGGATCCAGGCAAAGGCCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGATTATGAGCTCATGAGTGAGTGGGGATCCAGGCAAAGGCCTAT  150

seq1  GGCAAAAATATGGCCCAAGTAGCAGGCTTTAGGTCATCACTTCTTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAATATGGCCCAAGTAGCAGGCTTTAGGTCATCACTTCTTCCCTC  200

seq1  TGGACCTGAGGTACCTCATGGCGCCACCTGAACAGGAAGAAGGCTACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGAGGTACCTCATGGCGCCACCTGAACAGGAAGAAGGCTACGTG  250

seq1  AGCACTAACCCACTCTCTCTGGAAAATGCTAGGCCTCCAGAGTCAGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAACCCACTCTCTCTGGAAAATGCTAGGCCTCCAGAGTCAGGTAC  300

seq1  AATTAGAGCAGACCTTGAGTATGACACAATCCAATACAGTAAACAGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGCAGACCTTGAGTATGACACAATCCAATACAGTAAACAGCAGC  350

seq1  CATATATGGCTATTTCAATTCAGTCACACTGGCTGCATTTCAGGTGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGGCTATTTCAATTCAGTCACACTGGCTGCATTTCAGGTGCCCA  400

seq1  CAAGTCACATATACCTGTGTGTCTTTAACAAAAGATAGAATAAAATTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCACATATACCTGTGTGTCTTTAACAAAAGATAGAATAAAATTAGG  450

seq1  TAACATTTTTTTTTCTTCTTTACTGCTTATAAGTAGGTAAAACTAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTTTTTTCTTCTTTACTGCTTATAAGTAGGTAAAACTAACAAT  500

seq1  TAGTAATACATCACTGAAAAAGCAGAGAAACATGCTTTTTTTTTTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATACATCACTGAAAAAGCAGAGAAACATGCTTTTTTTTTTTTCAA  550

seq1  AAACTTTATAACTAATCAATTTTCAGCTGCTAGGCCATTAAACCAATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATAACTAATCAATTTTCAGCTGCTAGGCCATTAAACCAATATA  600

seq1  TTTAAATCAACAGCACTGCACTATGCTGTTTAATATATGTAAGTGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCAACAGCACTGCACTATGCTGTTTAATATATGTAAGTGAAACT  650

seq1  AATACACACAAACTTTCCTTATCTATTTACCAAGCTCAACTCAACCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACACAAACTTTCCTTATCTATTTACCAAGCTCAACTCAACCCCAC  700

seq1  TCTAAAACTGAAAACGCCCTGACTGCTGGGTCCCTGGCCTTCGCCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACTGAAAACGCCCTGACTGCTGGGTCCCTGGCCTTCGCCTCCCA  750

seq1  AGCACTGCAGCTTAGGCATTCACTACCACACTTGATTGTAGGTGGTGCC-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCACTGCAGCTTAGGCATTCACTACCACACTTGATTGTAGGTGGTGCCG  800

seq1  GGGGATCAAACCCAGAGCTTTGTACATGCCAAGCAAACACTCCACCAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCAAACCCAGAGCTTTGTACATGCCAAGCAAACACTCCACCAACT  850

seq1  GAACCATACCCCCAGACCAAAGTCTGTCCTTTAGCTGCATCAATGGTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATACCCCCAGACCAAAGTCTGTCCTTTAGCTGCATCAATGGTGTA  900

seq1  TACAGATCATAGAAACTGTGGTCAGCTTCTCTTATAAAGAGGTGGTAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATCATAGAAACTGTGGTCAGCTTCTCTTATAAAGAGGTGGTAACT  950

seq1  ATGAACTTGACGACTTCTATATGTTTGACCATGAATTGCATAGAACGTCA  999
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ATGAACTTGACGACTTCTATATG-TTGACCATGAATTGCATAG-ACGTCA  998

seq1  TACAATGTTTCCAATGTTTCTAGCTGCAAACAGAGTTTAGGCTTG-TTTA  1048
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  TACAATGTTTCCAATGTTTCTAGCTGCAAACAGAGTTAAGGCTTGTTTTA  1048

seq1  TTCTTTCTGAGTCT-CTAGTTAAGCCTCAGTCTTTTGAATTCTGAAA-CT  1096
      |  ||||||||||| ||||| |  ||||||   |||||  ||||||| ||
seq2  TCTTTTCTGAGTCTCCTAGTAAGCCCTCAGGTCTTTGA--TCTGAAACCT  1096

seq1  AGTTTCAGTAATTCTAAAATTTGAAATGGGATTTTTTTTTTCCA  1140
      ||||||||| ||||||||  ||| |||||||  |||||||||||
seq2  AGTTTCAGTTATTCTAAA--TTG-AATGGGA--TTTTTTTTCCA  1135

seq1: chr1_65126923_65128045
seq2: B6Ng01-262D03.g_64_1203 (reverse)

seq1  GTCAAG--ATATCTCCTG-TACTCCCCCGGC-CTTAGCA--GGTACT-GC  43
      ||||||  |||| | ||| || | | ||| | ||  |||  |||||| ||
seq2  GTCAAGATATATTTTCTGTTATTTCGCCGACACTAGGCATGGGTACTGGC  50

seq1  CGTCCTCTGTAG-CTAGGCA-TCTCA-TAGAGAACCCAGCA-GCCCTCCA  89
       |||||| |||| ||||||| | ||| |||||||||||||| ||| ||||
seq2  TGTCCTC-GTAGTCTAGGCATTTTCATTAGAGAACCCAGCAGGCCATCCA  99

seq1  TCACATTG--AGGGA-GTGGATTTCACTGAAGTGGAAGCGATCCTGAAGA  136
      ||||||||  ||||| |||||||||||||||||||||||||| |||||||
seq2  TCACATTGGAAGGGAGGTGGATTTCACTGAAGTGGAAGCGAT-CTGAAGA  148

seq1  GA-GAGACAATCGTCTGTGATC-TCTGAC--ATTTGTCCTCTGA-AGTCA  181
      || ||||||||||||||||||| ||||||   |||||||||||| |||||
seq2  GAGGAGACAATCGTCTGTGATCTTCTGACCATTTTGTCCTCTGAGAGTCA  198

seq1  TCTTTTTCGTAGATCCTCATTCT-GTAAGTGCCAGAGTGCTGGGGGGAAG  230
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TCTTTTTCGTAGATCCTCATTCTAGTAAGTGCCAGAGTGCT-GGGGGAAG  247

seq1  GGGTTGGGGAGGGGGGCAGACAGAAGAAGAAAAGCAACTGAATACAAGTA  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGGGAGGGGGGCAGACAGAAGAAGAAAAGCAACTGAATACAAGTA  297

seq1  GAAGCCAAGTTTCCTGTCTCAGTATCTTCAGCCTCTAAATCCCAAGTCCA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAAGTTTCCTGTCTCAGTATCTTCAGCCTCTAAATCCCAAGTCCA  347

seq1  AGTCTGCATTCAGAACAAGCTCGGTACAGAGCTCAGAAGTCTCTAAAGCC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCATTCAGAACAAGCTCGGTACAGAGCTCAGAAGTCTCTAAAGCC  397

seq1  TCGGGTGTCACCTGAAGAATCTTAGGGTGTCAATGGCCAATCAAGGAACA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTGTCACCTGAAGAATCTTAGGGTGTCAATGGCCAATCAAGGAACA  447

seq1  GCACCCAGGCTTCTCCATGCCTAGCTACCAGCCCATAGTCTCTGGCAATT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGGCTTCTCCATGCCTAGCTACCAGCCCATAGTCTCTGGCAATT  497

seq1  CAAAGTTGCTTAAAATAAAGCTTATCACACGTAGTTTAAAAATGCTTAAA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGCTTAAAATAAAGCTTATCACACGTAGTTTAAAAATGCTTAAA  547

seq1  GTAAAACTCAGCATACTGTCTTTGTGCTTGTTTGGACAGCTCTTTGCAGG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTCAGCATACTGTCTTTGTGCTTGTTTGGACAGCTCTTTGCAGG  597

seq1  AGAGGAAATCAGAAAGTTACCAGAAGGGTAGCGTTTTGATATGTCTCCCG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAATCAGAAAGTTACCAGAAGGGTAGCGTTTTGATATGTCTCCCG  647

seq1  TGTTGAAAAGGTATCAACCTTCAGCGATTCTCTGCAAAACCTGTGCATTG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAAGGTATCAACCTTCAGCGATTCTCTGCAAAACCTGTGCATTG  697

seq1  GTCCACGTATCTCTAGAGCAGGAGACTGAGCCCCTGTGATATATAAGGTG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGTATCTCTAGAGCAGGAGACTGAGCCCCTGTGATATATAAGGTG  747

seq1  CTGTGTTTCCCTGGTTTCTCTTTCTAAGTCTCAGTTTCAGTCCAAATCAG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTCCCTGGTTTCTCTTTCTAAGTCTCAGTTTCAGTCCAAATCAG  797

seq1  CCCCTTCCCCTGGCTTCCTGCATGCCCACTGACCCTTCCCTGTGAGGGTT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCCTGGCTTCCTGCATGCCCACTGACCCTTCCCTGTGAGGGTT  847

seq1  AAACTTCATCTTGTCTCACCCCTCCCACACTCCACCTGCCTAGGATGCTA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCATCTTGTCTCACCCCTCCCACACTCCACCTGCCTAGGATGCTA  897

seq1  TTATGGTCGTGCTTTAGAAAGCATGAATCTTGAACTTTGGTTTTAACCCT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTCGTGCTTTAGAAAGCATGAATCTTGAACTTTGGTTTTAACCCT  947

seq1  TTTGCTGGTGTATTCCTCCAAGGGAGCCAATAGGTACTGCCCACTACATA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGTGTATTCCTCCAAGGGAGCCAATAGGTACTGCCCACTACATA  997

seq1  TGAATAAGAAGCAGAAGATGGGGAAAAAATCGAGTAGAAAGAATTGCAAG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGAAGCAGAAGATGGGGAAAAAATCGAGTAGAAAGAATTGCAAG  1047

seq1  GCCAAGCAAGCCAACATGTTTTTAGATGAGATCAGGGCATTCAAGGTGGT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCAAGCCAACATGTTTTTAGATGAGATCAGGGCATTCAAGGTGGT  1097

seq1  ATGGTTTTCTACAAAGCGGATGGCTCAGGCTGGCCTTGAATTC  1123
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTCTACAAAGCGGATGGCTCAGGCTGGCCTTGAATTC  1140