BAC Information

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BAC

Clone NameB6Ng01-262D11
Chromosome1 (Build37)
Map Location 8,086,211 - 8,087,341
singlet/doubletsinglet
Overlap genenone
Upstream genePcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262D11.bB6Ng01-262D11.g
ACCGA066691GA066692
length1,1211,188
definitionB6Ng01-262D11.b B6Ng01-262D11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcctgaatatctcagcggcctctcagcaggtagcagtgtcttg
tgctaccaaggaggagcagtggtaggtggcagaacaatagagccatctag
gcaggaaggctccaccccaggcagtctaattctcagtggtaatggagtct
gaaccagcctgtttcagcctgggggagattacaaaaatgattttgttctg
agtgttttttcctctgtgtcacaaaagttatatgagccattcatgcctgt
ccaccaattagtgattgttgaagtgggaagggaaccaggaaagatgataa
tattttcataaaggaaactcagactatgcagatctcagtcagtattcagt
tttcaaagccatcctgggaatgtgtacaatcttgcaatgtctgtaaaaag
ataaggtagttaaaaggaaaacaaaaaacaaagaaaaaattaagtatatt
tcaagaaaatattaattctactaaaaaagaataaaactgattttctcttg
aatcattagcgcatttttctcctttgttaatattattttaagaacaacag
tgaaccatttgtggtactccacatgtgcatggtgatgaagtcctgtactt
ccagcacatcatagatagcaggatctcagacattttgctatgggcaaaaa
cccaactaaggtactgtggcaaccgccctcgaccagcaaggacatgacta
ccagttcttctaacagcagtttattcagcaagcttcagccttcatctctc
tccctattcatctctttcccttcatctctctctcttcatctctctctctc
ttttctctctctctctccagaaccccaggcatctcactcttatatactct
cagcccccacccactcacatcaggccatgtcacctcaccaggcacgcagc
ttcagccattcagggtggcacgggcgtgtcttcaccaaatatgggacttg
tttacaccaccagcatcatggtttcacctgtgaatctcatgatgggttgt
ggcttattttcaggtgtatgagatgtcaagtgcaaattatagacttagca
acagtcctgggtgccatctgggactgctgcacacactctcaagcacacta
ttcagctcatctcacaataca
gaattccttacaaccccatgggacaaggaatagttgaacgtgctcatcgc
accttaaagaattggctttttaagacaaaagagggtcagctatatccccc
aaggtcaccaaaggcccaccttgccttcactttatttgtcctaaatttct
tgcacaccgatatcaagggccagtctgcagcggatcgccactggcatcca
gttacttctaattcttatgcattggtaaaatggaaggaccccctgactaa
tgaatggaagggtccagatccagttctaatttggggtaggggctcagttt
gtgttttttcacgagatgaagatggagcgcggtggctgccagagagatta
attcgtcagatgaacacagattctgactcttctggtaagtatcattctaa
agactaaaattccttttgtgcttaaaattcagctgagagcaacagctctc
aaagctgttctccagctactctctgagccagcttcccgacaggaggccgg
agactagcctcagttttacaatttgcatttgaataaagtacctagacttc
cccgaaagaagttctgctttcctactttctcactgtctttcaagattttg
tctttcaagcaggtaaatcaacattcccgaggcggaccagtggatgtgca
tccccgcccccctagagcacacaggtggcagctgttacccccagtctcag
gacatttccagcacgtggttttcagtctgagttaaaaatttaggtttacc
tagagggctagaagagtagatatttccatattaataaagattggttttta
ttttgatagacaggcttagccccttagctgacctctggcttttcaccctt
gctgttactgcaaggtgtccttagctcaataggctgtggaaaaaacaggg
atgaggaggaacgacttccagctcctattttagccacaaatcatggtgtt
actaacgacataattcttgcttaggctttgctacttctgagttgatattc
ctccttagagctgcacagcactcagaactgtgcatactggtttgtgatgt
acaattcagtatgtgcaccgccttgtgccagagatactactgccaaggga
gtcggctgaccattctgagttctggtgagattaacggttggagaagttgt
accaattgttaaaataaaaattttctccgggcccatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_8086211_8087341
seq2: B6Ng01-262D11.b_46_1166 (reverse)

seq1  TGTATTTGTGAGATGAGCTGAATAGTGTGCCTTGTGAGGAGTGGGTGTGG  50
      |||| ||||||||||||||||||||||||| |      ||| | |||| |
seq2  TGTA-TTGTGAGATGAGCTGAATAGTGTGCTT------GAGAGTGTGT-G  42

seq1  CAGCAGTCCCAAGATGGCACCCAGGACTGTTGCTAAGTCTTATAATTTGC  100
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  CAGCAGTCCC-AGATGGCACCCAGGACTGTTGCTAAGTC-TATAATTTGC  90

seq1  ACCTGACATCCTCATACACCTGAAAATAAGCCACAA-CCATCATGAGAAT  149
      || |||||| |||||||||||||||||||||||||| |||||||||||  
seq2  ACTTGACAT-CTCATACACCTGAAAATAAGCCACAACCCATCATGAGA--  137

seq1  TCCACAGGTG-AACCATGATGCTGGTGGTGTAAACAAGT-CCATATTTGG  197
      | |||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TTCACAGGTGAAACCATGATGCTGGTGGTGTAAACAAGTCCCATATTTGG  187

seq1  TGAAGACACGCCCCTGCCACCCTGAATGGCTGAAGCTGCGTGCCTGGTGA  247
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACGCCCGTGCCACCCTGAATGGCTGAAGCTGCGTGCCTGGTGA  237

seq1  GGTGACATGGCCTGATGTGAGTGGGTGGGGGCTGAGAGTATATAAGAGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATGGCCTGATGTGAGTGGGTGGGGGCTGAGAGTATATAAGAGTG  287

seq1  AGATGCCTGGGGTTCTGGAGAGAGAGAGAGAAAAGAGAGAGAGAGATGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTGGGGTTCTGGAGAGAGAGAGAGAAAAGAGAGAGAGAGATGAA  337

seq1  GAGAGAGAGATGAAGGGAAAGAGATGAATAGGGAGAGAGATGAAGGCTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGATGAAGGGAAAGAGATGAATAGGGAGAGAGATGAAGGCTGA  387

seq1  AGCTTGCTGAATAAACTGCTGTTAGAAGAACTGGTAGTCATGTCCTTGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTGAATAAACTGCTGTTAGAAGAACTGGTAGTCATGTCCTTGCT  437

seq1  GGTCGAGGGCGGTTGCCACAGTACCTTAGTTGGGTTTTTGCCCATAGCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGAGGGCGGTTGCCACAGTACCTTAGTTGGGTTTTTGCCCATAGCAA  487

seq1  AATGTCTGAGATCCTGCTATCTATGATGTGCTGGAAGTACAGGACTTCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGAGATCCTGCTATCTATGATGTGCTGGAAGTACAGGACTTCAT  537

seq1  CACCATGCACATGTGGAGTACCACAAATGGTTCACTGTTGTTCTTAAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCACATGTGGAGTACCACAAATGGTTCACTGTTGTTCTTAAAAT  587

seq1  AATATTAACAAAGGAGAAAAATGCGCTAATGATTCAAGAGAAAATCAGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAACAAAGGAGAAAAATGCGCTAATGATTCAAGAGAAAATCAGTT  637

seq1  TTATTCTTTTTTAGTAGAATTAATATTTTCTTGAAATATACTTAATTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTTTTAGTAGAATTAATATTTTCTTGAAATATACTTAATTTTT  687

seq1  TCTTTGTTTTTTGTTTTCCTTTTAACTACCTTATCTTTTTACAGACATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTTTGTTTTCCTTTTAACTACCTTATCTTTTTACAGACATTG  737

seq1  CAAGATTGTACACATTCCCAGGATGGCTTTGAAAACTGAATACTGACTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGTACACATTCCCAGGATGGCTTTGAAAACTGAATACTGACTGA  787

seq1  GATCTGCATAGTCTGAGTTTCCTTTATGAAAATATTATCATCTTTCCTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCATAGTCTGAGTTTCCTTTATGAAAATATTATCATCTTTCCTGG  837

seq1  TTCCCTTCCCACTTCAACAATCACTAATTGGTGGACAGGCATGAATGGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCCACTTCAACAATCACTAATTGGTGGACAGGCATGAATGGCT  887

seq1  CATATAACTTTTGTGACACAGAGGAAAAAACACTCAGAACAAAATCATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAACTTTTGTGACACAGAGGAAAAAACACTCAGAACAAAATCATTT  937

seq1  TTGTAATCTCCCCCAGGCTGAAACAGGCTGGTTCAGACTCCATTACCACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATCTCCCCCAGGCTGAAACAGGCTGGTTCAGACTCCATTACCACT  987

seq1  GAGAATTAGACTGCCTGGGGTGGAGCCTTCCTGCCTAGATGGCTCTATTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTAGACTGCCTGGGGTGGAGCCTTCCTGCCTAGATGGCTCTATTG  1037

seq1  TTCTGCCACCTACCACTGCTCCTCCTTGGTAGCACAAGACACTGCTACCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCACCTACCACTGCTCCTCCTTGGTAGCACAAGACACTGCTACCT  1087

seq1  GCTGAGAGGCCGCTGAGATATTCAGGAGGAATTC  1131
      ||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGGCCGCTGAGATATTCAGGAGGAATTC  1121