BAC Information

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BAC

Clone NameB6Ng01-262F07
Chromosome1 (Build37)
Map Location 53,012,908 - 53,013,962
singlet/doubletsinglet
Overlap genenone
Upstream geneStat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik
Downstream geneGdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262F07.bB6Ng01-262F07.g
ACCGA066777GA066778
length1,2051,053
definitionB6Ng01-262F07.b B6Ng01-262F07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccagatcttcaaagatgacctaataccaatattcctcaaact
attccataaaatagaaatagaagaaactatctaattcattctatggagcc
acaattactctgatacctaaaccacacaataatccaccaacaacaaaaaa
gagaatttcaggacaattttgatcatgaatattgatgcaaaaatacccaa
taaaaaatctcacaaactgagtccaagaacacatcaaaaccatcactcac
cattttcaagtaggttttatcccagaagtatacggttggttcaatatacc
aaaatccattaatgtaatccaatatataaacaaactcaaagaaaaaaaaa
tcacaagatcatctccttagatgctgagaaagcatttgacaaaatacaac
accccttcatgttaaaagtgttggagagatcaggaattcaaggaccatac
ctaaacataataaaaacaatttacagcaaaccaacagccaatatcacatt
taacagtgagatacttaaagcaatcccactaaaatcagggacaaggcaag
ggtgcctactctccccatatctattcaatatagtactcaaaattctagct
agagcaataagataacaaaaggagaccaaagggatacaaattggcaaaga
agaaataaaggtatcactatctgcagatatgatagtatacataagcccaa
aaattctaccagagaacttttacagctgataaacaacttcagcaaagtgg
ctgtatataaaattaattcaaataaatcagtagccttcctttataaaaaa
gataaacaggctgagaaagaaactagggaaacaacactcttcacaatagt
aacatataatataaaatatcttagtgttactctaaccaaacaagtgaaag
atctgtatgacaataacttcaagtctcccaggaaagaaatcgaagatctc
agaaaatggagatatctcccatgctcatggattggcaaaatttaacatag
taaaaatggccatcctgggctggagagatggctcagtggtaagagcactg
actgctcttccagagtctgagtcatcccagcaccacatggtgctcacaca
tctgtaatggtctgaaccctaatctggtgtgtctaaagagagcaatgtga
atcctaatatctacgaaggccaatctacagattcaacacctattccccca
tcttc
gaattcacatagaaggccatgagctagagccttgctcagaaatacagacg
caagagaagaaaaaaacgactgagtactttctgttctgttctgctttgtt
ttgttgagacagggcttcaatatgtagccaagattggactcactcctaat
cctcctccctcctcctcccaagtcctgggtttgtaggactgtgccactgc
accaggcttagaaggctttattgaattgttcaaaccgcgtggtctgccac
tagggattcaaaagctctgatagcagcccatcttcttttcaagtcctggt
aaaccaactcagcagcaggggacattgcccacatgggctgaaggactagg
agctagatgggaaagattgttacttagaaccaaggccagatttagcaggc
cagtgagcctttggaaagcaatgtgaactgcattggctttggagtcaggc
ctggattcaaatataagtccaagcgtacatcagtagttgccttgtatttc
ccattgccttctatttaaaacaggaaccatcgccgcatggactatttatt
gtagaaggctttgtgggtctcaactcacagctgctcaatgactagttaca
gcagcttgttttccatcagaggttaacagctaaatgataaatcctaagcc
ataaaatgtttctaggtaggcagtttcttatgctgaatttcctgaaattc
ttcaagtaccaacttatcagatctttgagagttgatttgatttctgagga
gaatctttaataaaattaaactgttttcttaactgatggccacagagaga
gtcaccgatccttgcatggtacacagaatcccaaggaaagactcaagtat
tttgataacatcacacaaactgatttaaacactgtaggcagtgaggtaat
ggaaattgaatcacacttaaaagcacatataacctcaagaaaaaatataa
aacgtgtaatacagtgtgacatataatataaatgtgcaacatgatccact
tcaagattaccattgtctcatattcccacatttcacgaatacaccagtgt
gtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53012908_53013962
seq2: B6Ng01-262F07.g_62_1113 (reverse)

seq1  ACACACCCCTGTGTATTCGTGAAATGTGG--ATATGAGACAATGGTAAAT  48
        |||| |  |||||||||||||||||||  ||||||||||||||| |||
seq2  --ACACACTGGTGTATTCGTGAAATGTGGGAATATGAGACAATGGT-AAT  47

seq1  CTTGAAGT-GATCATTGTTGCCACATTTATTATTTATATGTCACACTGTA  97
      |||||||| ||||| ||||| |||||||||   |||||||||||||||||
seq2  CTTGAAGTGGATCA-TGTTG-CACATTTAT--ATTATATGTCACACTGTA  93

seq1  TTACACGTTTTATA-TTTTTCTTGAGGTTATATGTGCTTTTAAGTGTGAT  146
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTACACGTTTTATATTTTTTCTTGAGGTTATATGTGCTTTTAAGTGTGAT  143

seq1  TCAATTTCCATTACCTCACTGCCTACAGTGTTTAAATCAGTTTGTGTGAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCCATTACCTCACTGCCTACAGTGTTTAAATCAGTTTGTGTGAT  193

seq1  GTTATCAAAATACTTGAGTCTTTCCTTGGGATTCTGTGTACCATGCAAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAAAATACTTGAGTCTTTCCTTGGGATTCTGTGTACCATGCAAGG  243

seq1  ATCGGTGACTCTCTCTGTGGCCATCAGTTAAGAAAACAGTTTAATTTTAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTGACTCTCTCTGTGGCCATCAGTTAAGAAAACAGTTTAATTTTAT  293

seq1  TAAAGATTCTCCTCAGAAATCAAATCAACTCTCAAAGATCTGATAAGTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTCTCCTCAGAAATCAAATCAACTCTCAAAGATCTGATAAGTTG  343

seq1  GTACTTGAAGAATTTCAGGAAATTCAGCATAAGAAACTGCCTACCTAGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGAAGAATTTCAGGAAATTCAGCATAAGAAACTGCCTACCTAGAA  393

seq1  ACATTTTATGGCTTAGGATTTATCATTTAGCTGTTAACCTCTGATGGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATGGCTTAGGATTTATCATTTAGCTGTTAACCTCTGATGGAAA  443

seq1  ACAAGCTGCTGTAACTAGTCATTGAGCAGCTGTGAGTTGAGACCCACAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGCTGTAACTAGTCATTGAGCAGCTGTGAGTTGAGACCCACAAA  493

seq1  GCCTTCTACAATAAATAGTCCATGCGGCGATGGTTCCTGTTTTAAATAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTACAATAAATAGTCCATGCGGCGATGGTTCCTGTTTTAAATAGA  543

seq1  AGGCAATGGGAAATACAAGGCAACTACTGATGTACGCTTGGACTTATATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGGGAAATACAAGGCAACTACTGATGTACGCTTGGACTTATATT  593

seq1  TGAATCCAGGCCTGACTCCAAAGCCAATGCAGTTCACATTGCTTTCCAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAGGCCTGACTCCAAAGCCAATGCAGTTCACATTGCTTTCCAAA  643

seq1  GGCTCACTGGCCTGCTAAATCTGGCCTTGGTTCTAAGTAACAATCTTTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTGGCCTGCTAAATCTGGCCTTGGTTCTAAGTAACAATCTTTCC  693

seq1  CATCTAGCTCCTAGTCCTTCAGCCCATGTGGGCAATGTCCCCTGCTGCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGCTCCTAGTCCTTCAGCCCATGTGGGCAATGTCCCCTGCTGCTG  743

seq1  AGTTGGTTTACCAGGACTTGAAAAGAAGATGGGCTGCTATCAGAGCTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTTACCAGGACTTGAAAAGAAGATGGGCTGCTATCAGAGCTTTT  793

seq1  GAATCCCTAGTGGCAGACCACGCGGTTTGAACAATTCAATAAAGCCTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTAGTGGCAGACCACGCGGTTTGAACAATTCAATAAAGCCTTCT  843

seq1  AAGCCTGGTGCAGTGGCACAGTCCTACAAACCCAGGACTTGGGAGGAGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGTGCAGTGGCACAGTCCTACAAACCCAGGACTTGGGAGGAGGA  893

seq1  GGGAGGAGGATTAGGAGTGAGTCCAATCTTGGCTACATATTGAAGCCCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGATTAGGAGTGAGTCCAATCTTGGCTACATATTGAAGCCCTG  943

seq1  TCTCAACAAAACAAAGCAGAACAGAACAGAAAGTACTCAGTCGTTTTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAAAACAAAGCAGAACAGAACAGAAAGTACTCAGTCGTTTTTTT  993

seq1  CTTCTCTTGCGTCTGTATTTCTGAGCAAGGCTCTAGCTCATGGCCTTCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTGCGTCTGTATTTCTGAGCAAGGCTCTAGCTCATGGCCTTCTA  1043

seq1  TGTGAATTC  1055
      |||||||||
seq2  TGTGAATTC  1052