BAC Information

Click to search

BAC

Clone NameB6Ng01-262N21
Chromosome1 (Build37)
Map Location 148,306,267 - 148,429,067
singlet/doubletdoublet
Overlap geneB830045N13Rik
Upstream geneLOC383571
Downstream geneLOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262N21.bB6Ng01-262N21.g
ACCGA067174GA067175
length6481,086
definitionB6Ng01-262N21.b B6Ng01-262N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,428,421 - 148,429,067)(148,306,267 - 148,307,359)
sequence
gaattcactttgaatagttcatttttcctaacatagccacacctgctact
gttagtcttattgactttgcagttggtattcagccttacacctccatttg
tcatcattccgaaattgctttagtagaatcttttgaagcttgactatttt
ctcttgcctagtttttctgtcaaggcttccaatcctctgctgaatagatg
gttgaataaagtaactatccctgcaattttttacacctttgaagaaatgc
tttccatttttcatcatttagtgtaattccagctaccagcttcttcctaa
ttgccttcactgtagtaaaggacatggctacccctagttaggtaagactt
tattttagatggaggctaaaatctgtccactgatcaatctcaattctttt
cttcaatatactgatactggcatattgtataactttattcagatctatgg
ctataaataccatctcagagccaatgatcaaccaatgtaaatgtccactt
caggttttgtttggtgtgtgtatgtgtgtgtgtgtgtgtgtgtgcgcggt
gatgatgcctaacttcttttctgaatatttcaacttgatagtctaatgag
tcttaaactgaatacatccaaaattatgctttatgttctcctctaaaa

gaattcctggccccgatttttagattccctgggacccctgaagatttcac
atatttgagaatagaatatactgtcaaatagtgaacaaagtaataaaata
aacaaagagatttatatcactatgtaatctaatatggaaggagttaaagg
atgtatatataagtcatagtgctagtacaaggccatttcaacaaaaacaa
aaagaaaaatcagtgatacacaatatatgatattcagaacatcttaagga
gttggaattagtgaagcacaggaccataatgttgatattacatggtatta
tcttaacattaataaaactacaaatcttcattttgctaagctacacataa
aatactgtatagattttaacaaaccaaatttttgcaatgtaagaaaatga
aataatgacgtgccatcattcatcaatgcttactcttgagatgtagaagt
aatttaatattcaaaacttaatcaatgccatttccttgtaaagagaatac
aggaggagagatttctgattctgtagcagaatatatgtctagaatgatga
tcgaggccctgatttgaactgtagaatgataaaataggacagaagaagtt
catgtgtatatattgtagaggcagaaaatcacttgggtaaattgatcatt
ttatgaaataatcttatctctagccatagcacttctctattttgatatct
cgaaatatgaaacatcttaaattaatgtgaaatatatatgcatatataaa
tatcagaattatatccactaatgtgtacactactataatatttgcaggta
cctggtatctgactagaaaaccatccatttcatctagattttccagtttt
gttgagtataggctttggaggtgagatctgatgcttttttgaatttcctc
agtttctattgttatagaaactgttatttatgatcttgttaacttggata
ctttctctatgccctctgggttagataaaccctggctaaatgttaatctc
tctgttgatttcaaaagacagctcctgactttagtgatgtttgtatgggt
cgtccttgtttctacttgatgattcagccccgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148428421_148429067
seq2: B6Ng01-262N21.b_44_690 (reverse)

seq1  TTTAGAGGAGAACATTAAAGCATAATTTTGGATGTATTCAGTTTAAGACT  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGAGAACA-TAAAGCATAATTTTGGATGTATTCAGTTTAAGACT  49

seq1  CATTAGACTATCAAGTTGAAATATTCAG-AAAGAAGTTAGGCATCATCAC  99
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATTAGACTATCAAGTTGAAATATTCAGAAAAGAAGTTAGGCATCATCAC  99

seq1  AGTGCACACACACACACACACACACATACACACACCAAACAAAACCTGAA  149
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACACACACACACACACACACATACACACACCAAACAAAACCTGAA  149

seq1  GTGGACATTTACATTGGTTGATCATTGGCTCTGAGATGGTATTTATAGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATTTACATTGGTTGATCATTGGCTCTGAGATGGTATTTATAGCC  199

seq1  ATAGATCTGAATAAAGTTATACAATATGCCAGTATCAGTATATTGAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTGAATAAAGTTATACAATATGCCAGTATCAGTATATTGAAGAA  249

seq1  AAGAATTGAGATTGATCAGTGGACAGATTTTAGCCTCCATCTAAAATAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGAGATTGATCAGTGGACAGATTTTAGCCTCCATCTAAAATAAA  299

seq1  GTCTTACCTAACTAGGGGTAGCCATGTCCTTTACTACAGTGAAGGCAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACCTAACTAGGGGTAGCCATGTCCTTTACTACAGTGAAGGCAATT  349

seq1  AGGAAGAAGCTGGTAGCTGGAATTACACTAAATGATGAAAAATGGAAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGCTGGTAGCTGGAATTACACTAAATGATGAAAAATGGAAAGC  399

seq1  ATTTCTTCAAAGGTGTAAAAAATTGCAGGGATAGTTACTTTATTCAACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCAAAGGTGTAAAAAATTGCAGGGATAGTTACTTTATTCAACCA  449

seq1  TCTATTCAGCAGAGGATTGGAAGCCTTGACAGAAAAACTAGGCAAGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCAGCAGAGGATTGGAAGCCTTGACAGAAAAACTAGGCAAGAGAA  499

seq1  AATAGTCAAGCTTCAAAAGATTCTACTAAAGCAATTTCGGAATGATGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCAAGCTTCAAAAGATTCTACTAAAGCAATTTCGGAATGATGACA  549

seq1  AATGGAGGTGTAAGGCTGAATACCAACTGCAAAGTCAATAAGACTAACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGTGTAAGGCTGAATACCAACTGCAAAGTCAATAAGACTAACAG  599

seq1  TAGCAGGTGTGGCTATGTTAGGAAAAATGAACTATTCAAAGTGAATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGTGTGGCTATGTTAGGAAAAATGAACTATTCAAAGTGAATTC  647


seq1: chr1_148306267_148307359
seq2: B6Ng01-262N21.g_64_1149

seq1  GAATTCCTGGCCCCGATTTTTAGATTCCCTGGGACCCCTGAAGATTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCCCCGATTTTTAGATTCCCTGGGACCCCTGAAGATTTCAC  50

seq1  ATATTTGAGAATAGAATATACTGTCAAATAGTGAACAAAGTAATAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAGAATAGAATATACTGTCAAATAGTGAACAAAGTAATAAAATA  100

seq1  AACAAAGAGATTTATATCACTATGTAATCTAATATGGAAGGAGTTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGATTTATATCACTATGTAATCTAATATGGAAGGAGTTAAAGG  150

seq1  ATGTATATATAAGTCATAGTGCTAGTACAAGGCCATTTCAACAAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATAAGTCATAGTGCTAGTACAAGGCCATTTCAACAAAAACAA  200

seq1  AAAGAAAAATCAGTGATACACAATATATGATATTCAGAACATCTTAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATCAGTGATACACAATATATGATATTCAGAACATCTTAAGGA  250

seq1  GTTGGAATTAGTGAAGCACAGGACCATAATGTTGATATTACATGGTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAATTAGTGAAGCACAGGACCATAATGTTGATATTACATGGTATTA  300

seq1  TCTTAACATTAATAAAACTACAAATCTTCATTTTGCTAAGCTACACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACATTAATAAAACTACAAATCTTCATTTTGCTAAGCTACACATAA  350

seq1  AATACTGTATAGATTTTAACAAACCAAATTTTTGCAATGTAAGAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTATAGATTTTAACAAACCAAATTTTTGCAATGTAAGAAAATGA  400

seq1  AATAATGACGTGCCATCATTCATCAATGCTTACTCTTGAGATGTAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGACGTGCCATCATTCATCAATGCTTACTCTTGAGATGTAGAAGT  450

seq1  AATTTAATATTCAAAACTTAATCAATGCCATTTCCTTGTAAAGAGAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATATTCAAAACTTAATCAATGCCATTTCCTTGTAAAGAGAATAC  500

seq1  AGGAGGAGAGATTTCTGATTCTGTAGCAGAATATATGTCTAGAATGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAGATTTCTGATTCTGTAGCAGAATATATGTCTAGAATGATGA  550

seq1  TCGAGGCCCTGATTTGAACTGTAGAATGATAAAATAGGACAGAAGAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCCTGATTTGAACTGTAGAATGATAAAATAGGACAGAAGAAGTT  600

seq1  CATGTGTATATATTGTAGAGGCAGAAAATCACTTGGGTAAATTGATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATATATTGTAGAGGCAGAAAATCACTTGGGTAAATTGATCATT  650

seq1  TTATGAAATAATCTTATCTCTAGCCATAGCACTTCTCTATTTTGATATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATAATCTTATCTCTAGCCATAGCACTTCTCTATTTTGATATCT  700

seq1  CGAAATATGAAACATCTTAAATTAATGTGAAATATATATGCATATATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATATGAAACATCTTAAATTAATGTGAAATATATATGCATATATAAA  750

seq1  TATCAGAATTATATCCACTAATGTGTACACTACTATAATATTTGCAGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAATTATATCCACTAATGTGTACACTACTATAATATTTGCAGGTA  800

seq1  CCTGGTATCTGACTAGAAAACCATCCATTTCATCTAGATTTTCCAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTATCTGACTAGAAAACCATCCATTTCATCTAGATTTTCCAGTTTT  850

seq1  GTTGAGTATAGGCTTTGGAGGTGAGATCTGATGCTTTTTTGAATTTCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTATAGGCTTTGGAGGTGAGATCTGATGCTTTTTTGAATTTCCTC  900

seq1  AGTTTCTATTGTTATAGAAACTGTTATTTATGATCTTGTTAACTTGGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATTGTTATAGAAACTGTTATTTATGATCTTGTTAACTTGGATA  950

seq1  CTTTCTCTATGCCCTCT-GGTTAGATAAACCCCTGGCTAAATGTTAATCT  999
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  CTTTCTCTATGCCCTCTGGGTTAGATAAA-CCCTGGCTAAATGTTAATCT  999

seq1  CTCTTGTTGATTTTCAAAAAGAACCAGCTCCTGACTTTAGTGATGTTTTG  1049
      ||| |||||||||   ||||||  ||||||||||||||||||||| ||||
seq2  CTC-TGTTGATTT--CAAAAGA--CAGCTCCTGACTTTAGTGATG-TTTG  1043

seq1  TAT-GGTCGTCCTTGTTTCTACTTGGTTGATTTCAGCCCCGAGTT  1093
      ||| |||||||||||||||||||| | ||| ||||||||||||||
seq2  TATGGGTCGTCCTTGTTTCTACTT-GATGA-TTCAGCCCCGAGTT  1086


| Home | SequenceCutter | Blast | Download |