BAC Information

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BAC

Clone NameB6Ng01-263C07
Chromosome1 (Build37)
Map Location 82,277,963 - 82,392,136
singlet/doubletdoublet
Overlap geneIrs1, Rhbdd1
Upstream geneEG621020, LOC433328, EG665145
Downstream geneCol4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263C07.bB6Ng01-263C07.g
ACCGA067384GA067385
length1,1911,115
definitionB6Ng01-263C07.b B6Ng01-263C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,390,946 - 82,392,136)(82,277,963 - 82,279,084)
sequence
gaattccttgctagggtagttattttttactctggttaataagatgagcc
atgctggtgattcaatattattttttggagccacgaggtctttctctgtc
attgattatggaaaccacccttggttagactgtaatctgcaaaacctgac
agccggtgtaaaatccatttggagaacaacagcttttgctaggtccctgt
tgcctctgaccacccagtcttcctgcatgcaggactgagcactaaatgtc
aacattgttccatggctgcttgggttccttcctcaaagcacacaaagaga
tccagggactccactaagcatgtgtctacacatcaagaagtgctatccac
acagttgtctatgtgcttcatcatgtgtgcagtgtttatgacagacatta
aaaatatcaattagcaaatacttcaggctaccaagaggtaggaaacgtca
cattctttgaaatgtcacattctcaggggtaggcttagcatggactgctg
gacacacattgtataagtcaggggcttctgtccctcctcgtcctgaagca
tcttccacacaacagtaaattaccaggggtgacattatcttcgtcacaat
gcagtgtgacaaaagcaggtacctgcttgcccccagaggcacagtgtatt
gaaaggtataatgaagacagcagatgttctagacagattctgcttctaga
agacacttatcagtttctttccctcactgcctaccagctagctatggttt
atttcagcatcacagtggggaaagcaaacagttttcttctagacccaacc
caactgaaaaaaaaaaaaaacaaataaacaaaaaacaaagcaaccaaaaa
aacctacctataacaacaaaaggattgaattatctttttagtgtttcagc
ttggatggtaaataattccaaatgcagcaatgttaacagtcagccctttg
ctgttttctaatacacacacacagacacagacacacactcaaacacatag
acacagtcacacatacacatacacacaggtcacaatttgcagtgcaaata
ttgctctccacaagagtgggtcaactcattctgccccctcagcattctga
acctcctaagccaccatgggccttcagtgagctgagtcagaaacgttaga
atgccatgtttcaggaggacagacttctaggcttacatttt
gaattctgatgctacaaataagaaaaactatccataaaaataactaccta
caagaaggaggagattctgaacagaagaaatgttgagcaatatcacgggt
ctccattggttacagcctgacctacactgctacaggagtgtggtgctcct
gataggtgaagtgggaaagcagaaaactccagatgacttgcatacccatg
ggagagtttatttttaaatgagacatgaggagaccaatccagtctgaaga
tgacttcaaacatgtcaataaatacaatcagagggctttgccttaaagtc
cattaaaacatgaaaatgccctttcccaataagaaaggtcaaaaaaccaa
tcctaagtcaaaaagccttccttccaggcctccatgtgcctagacagagg
acatggaggtaaaagaagtggtgaggacacccccatgcactgaaccatgg
ccccaactactgcttctggagaaacaagctcaggacagatgactcattaa
gagtatcagtcatttgctccaaaacacccctatgtttagagctgcaaaga
aggattagaacgacgtggaacagacttctccagttactgatgaggaaaca
gacccagggaaactaagtgacttgatcaaggtcacgaggctacaacacca
gacctcactcccaggagcagcttattttccattgcctcattcaagatagc
gcaaagtgattttccaggaattttgataagccgaaagaaaaaaaaaaaga
ttgaaaaataaaagcagcatgctcgtttggagctcaagttttttttttgt
ttgtttgtttatttgtttttttggtttttttcctgtaaggcagtgttaga
ggtattcaaatagacggttactacatggagatatatttttaaaatcataa
aggaaataaaaagttagatgctgccgtttcttcctctgctcacagacacc
tgagtcctttcacaccggagctgtccctataccgtgttttactgtgcttt
tcccatggcatctcagagaacactacccctgtgctaggagtcagcgatga
gagatggtggctacgagagcactagagtaggtaaggagaaaacactttat
aggattcctatttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82390946_82392136
seq2: B6Ng01-263C07.b_46_1236 (reverse)

seq1  AAAATGTAAGGCCTAAGAAGTC-GTCTTCCTG-AACATGGCATTTTCCTA  48
      ||||||||| |||| ||||||| ||| ||||| |||||||||||   |||
seq2  AAAATGTAA-GCCT-AGAAGTCTGTCCTCCTGAAACATGGCATT---CTA  45

seq1  CCTGTTCTGACTCAGCTCACTGAAGGGCCCCATGGT-GCTTAGGAGG-TC  96
       |  ||||||||||||||||||||||  |||||||| |||||||||| ||
seq2  ACGTTTCTGACTCAGCTCACTGAAGG--CCCATGGTGGCTTAGGAGGTTC  93

seq1  AGGATGCTGAGGGGGCAG-ATGAGTTGACCCACTC-TGTGGAAGAGC-AT  143
      || ||||||||||||||| |||||||||||||||| ||||| ||||| ||
seq2  AGAATGCTGAGGGGGCAGAATGAGTTGACCCACTCTTGTGG-AGAGCAAT  142

seq1  ATTTGCACTGCAAATTGTGA-CTGTGTGTATGTGTATGTGTGACTGTGTC  192
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTTGCACTGCAAATTGTGACCTGTGTGTATGTGTATGTGTGACTGTGTC  192

seq1  TATGTGTTTGAGTGTGTGTCTGTGTCTGTGTGTGTGTTATTAGAAAACAG  242
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATGTGTTTGAGTGTGTGTCTGTGTCTGTGTGTGTG-TATTAGAAAACAG  241

seq1  C-AAGGGCTGACTGTTAACATTGCTGCATTTGGAATTATTTACCATCCAA  291
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCTGACTGTTAACATTGCTGCATTTGGAATTATTTACCATCCAA  291

seq1  GCTGAAACACTAAAAAGATAATTCAATCCTTTTGTTGTTATAGGTAGGTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACACTAAAAAGATAATTCAATCCTTTTGTTGTTATAGGTAGGTT  341

seq1  TTTTTGGTTGCTTTGTTTTTTGTTTATTTGTTTTTTTTTTTTTTCAGTTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTGCTTTGTTTTTTGTTTATTTGTTTTTTTTTTTTTTCAGTTG  391

seq1  GGTTGGGTCTAGAAGAAAACTGTTTGCTTTCCCCACTGTGATGCTGAAAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTCTAGAAGAAAACTGTTTGCTTTCCCCACTGTGATGCTGAAAT  441

seq1  AAACCATAGCTAGCTGGTAGGCAGTGAGGGAAAGAAACTGATAAGTGTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATAGCTAGCTGGTAGGCAGTGAGGGAAAGAAACTGATAAGTGTCT  491

seq1  TCTAGAAGCAGAATCTGTCTAGAACATCTGCTGTCTTCATTATACCTTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGCAGAATCTGTCTAGAACATCTGCTGTCTTCATTATACCTTTC  541

seq1  AATACACTGTGCCTCTGGGGGCAAGCAGGTACCTGCTTTTGTCACACTGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTGTGCCTCTGGGGGCAAGCAGGTACCTGCTTTTGTCACACTGC  591

seq1  ATTGTGACGAAGATAATGTCACCCCTGGTAATTTACTGTTGTGTGGAAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACGAAGATAATGTCACCCCTGGTAATTTACTGTTGTGTGGAAGA  641

seq1  TGCTTCAGGACGAGGAGGGACAGAAGCCCCTGACTTATACAATGTGTGTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGGACGAGGAGGGACAGAAGCCCCTGACTTATACAATGTGTGTC  691

seq1  CAGCAGTCCATGCTAAGCCTACCCCTGAGAATGTGACATTTCAAAGAATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTCCATGCTAAGCCTACCCCTGAGAATGTGACATTTCAAAGAATG  741

seq1  TGACGTTTCCTACCTCTTGGTAGCCTGAAGTATTTGCTAATTGATATTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTTTCCTACCTCTTGGTAGCCTGAAGTATTTGCTAATTGATATTTT  791

seq1  TAATGTCTGTCATAAACACTGCACACATGATGAAGCACATAGACAACTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTGTCATAAACACTGCACACATGATGAAGCACATAGACAACTGT  841

seq1  GTGGATAGCACTTCTTGATGTGTAGACACATGCTTAGTGGAGTCCCTGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAGCACTTCTTGATGTGTAGACACATGCTTAGTGGAGTCCCTGGA  891

seq1  TCTCTTTGTGTGCTTTGAGGAAGGAACCCAAGCAGCCATGGAACAATGTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGTGTGCTTTGAGGAAGGAACCCAAGCAGCCATGGAACAATGTT  941

seq1  GACATTTAGTGCTCAGTCCTGCATGCAGGAAGACTGGGTGGTCAGAGGCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTAGTGCTCAGTCCTGCATGCAGGAAGACTGGGTGGTCAGAGGCA  991

seq1  ACAGGGACCTAGCAAAAGCTGTTGTTCTCCAAATGGATTTTACACCGGCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACCTAGCAAAAGCTGTTGTTCTCCAAATGGATTTTACACCGGCT  1041

seq1  GTCAGGTTTTGCAGATTACAGTCTAACCAAGGGTGGTTTCCATAATCAAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTTTTGCAGATTACAGTCTAACCAAGGGTGGTTTCCATAATCAAT  1091

seq1  GACAGAGAAAGACCTCGTGGCTCCAAAAAATAATATTGAATCACCAGCAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAAAGACCTCGTGGCTCCAAAAAATAATATTGAATCACCAGCAT  1141

seq1  GGCTCATCTTATTAACCAGAGTAAAAAATAACTACCCTAGCAAGGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATCTTATTAACCAGAGTAAAAAATAACTACCCTAGCAAGGAATTC  1191

seq1: chr1_82277963_82279084
seq2: B6Ng01-263C07.g_67_1181

seq1  GAATTCTGATGCTACAAATAAGAAAAACTATCCATAAAAATAACTACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGCTACAAATAAGAAAAACTATCCATAAAAATAACTACCTA  50

seq1  CAAGAAGGAGGAGATTCTGAACAGAAGAAATGTTGAGCAATATCACGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGAGGAGATTCTGAACAGAAGAAATGTTGAGCAATATCACGGGT  100

seq1  CTCCATTGGTTACAGCCTGACCTACACTGCTACAGGAGTGTGGTGCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGGTTACAGCCTGACCTACACTGCTACAGGAGTGTGGTGCTCCT  150

seq1  GATAGGTGAAGTGGGAAAGCAGAAAACTCCAGATGACTTGCATACCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTGAAGTGGGAAAGCAGAAAACTCCAGATGACTTGCATACCCATG  200

seq1  GGAGAGTTTATTTTTAAATGAGACATGAGGAGACCAATCCAGTCTGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTTATTTTTAAATGAGACATGAGGAGACCAATCCAGTCTGAAGA  250

seq1  TGACTTCAAACATGTCAATAAATACAATCAGAGGGCTTTGCCTTAAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAAACATGTCAATAAATACAATCAGAGGGCTTTGCCTTAAAGTC  300

seq1  CATTAAAACATGAAAATGCCCTTTCCCAATAAGAAAGGTCAAAAAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAACATGAAAATGCCCTTTCCCAATAAGAAAGGTCAAAAAACCAA  350

seq1  TCCTAAGTCAAAAAGCCTTCCTTCCAGGCCTCCATGTGCCTAGACAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTCAAAAAGCCTTCCTTCCAGGCCTCCATGTGCCTAGACAGAGG  400

seq1  ACATGGAGGTAAAAGAAGTGGTGAGGACACCCCCATGCACTGAACCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGGTAAAAGAAGTGGTGAGGACACCCCCATGCACTGAACCATGG  450

seq1  CCCCAACTACTGCTTCTGGAGAAACAAGCTCAGGACAGATGACTCATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTACTGCTTCTGGAGAAACAAGCTCAGGACAGATGACTCATTAA  500

seq1  GAGTATCAGTCATTTGCTCCAAAACACCCCTATGTTTAGAGCTGCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCAGTCATTTGCTCCAAAACACCCCTATGTTTAGAGCTGCAAAGA  550

seq1  AGGATTAGAACGACGTGGAACAGACTTCTCCAGTTACTGATGAGGAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGAACGACGTGGAACAGACTTCTCCAGTTACTGATGAGGAAACA  600

seq1  GACCCAGGGAAACTAAGTGACTTGATCAAGGTCACGAGGCTACAACACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGGAAACTAAGTGACTTGATCAAGGTCACGAGGCTACAACACCA  650

seq1  GACCTCACTCCCAGGAGCAGCTTATTTTCCATTGCCTCATTCAAGATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACTCCCAGGAGCAGCTTATTTTCCATTGCCTCATTCAAGATAGC  700

seq1  GCAAAGTGATTTTCCAGGAATTTTGATAAGCCGAAAGAAAAAAAAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGATTTTCCAGGAATTTTGATAAGCCGAAAGAAAAAAAAAAAGA  750

seq1  TTGAAAAATAAAAGCAGCATGCTCGTTTGGAGCTCAAGTTTTTTTTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATAAAAGCAGCATGCTCGTTTGGAGCTCAAGTTTTTTTTTTGT  800

seq1  TTGTTTGTTTATTTGTTTTTTTGGTTTTTTTCCTGTAAGGCAGTGTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTATTTGTTTTTTTGGTTTTTTTCCTGTAAGGCAGTGTTAGA  850

seq1  GGTATTCAAATAGACGGTTACTACATGGAGATATATTTTTAAAATCAT-A  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTATTCAAATAGACGGTTACTACATGGAGATATATTTTTAAAATCATAA  900

seq1  AGGAAATAAAAAGTTAGATGCTGCCG-TTCTTCCTCTGCTCACAAGACAC  948
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  AGGAAATAAAAAGTTAGATGCTGCCGTTTCTTCCTCTGCTCAC-AGACAC  949

seq1  CTGAGTCCTTTCACACCGGAGCTGTCCCTATACCGTGTTTTACCTGTGCT  998
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGAGTCCTTTCACACCGGAGCTGTCCCTATACCGTGTTTTA-CTGTGCT  998

seq1  TTTCCCATGGGCATCTCAGAAGAACACTACCCCTGTGGCCTAGGAGTCAG  1048
      |||||||| |||||||||| |||||||||||||||||  |||||||||||
seq2  TTTCCCAT-GGCATCTCAG-AGAACACTACCCCTGTG--CTAGGAGTCAG  1044

seq1  CGATGGAGAAGGATGGTGGCTACCGAGAAGCACTAGAGGTTAGGGGAAGG  1098
      |||| ||||  ||||||||||| |||| ||||||||||  ||  || | |
seq2  CGAT-GAGA--GATGGTGGCTA-CGAG-AGCACTAGAG--TA--GGTAAG  1085

seq1  GAGAAAACACTTTTATAG-------ATTTCT  1122
      |||||||||| |||||||       ||||||
seq2  GAGAAAACAC-TTTATAGGATTCCTATTTCT  1115