BAC Information

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BAC

Clone NameB6Ng01-263K14
Chromosome1 (Build37)
Map Location 166,182,196 - 166,274,206
singlet/doubletdoublet
Overlap geneSlc19a2, 4930455F23Rik, Blzf1, Nme7
Upstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5
Downstream geneAtp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263K14.bB6Ng01-263K14.g
ACCGA067770GA067771
length1,227958
definitionB6Ng01-263K14.b B6Ng01-263K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,272,980 - 166,274,206)(166,182,196 - 166,183,143)
sequence
gaattctctaatgtggcatgtgacaactaagggaatggtgggctactgag
aagatactgatcatgactgacttccagtttctctagctagtcatttgtta
agtctcagtgccacagaaccagctaatttattcattgaaactttctgcat
atgaattatatagacaatattaaactaagagctgtaatttagtattataa
aagcatacaaagaatctaaaacaaagaataattgccaaacaaatgtatat
gataatgctaacaaagtttaggaacattttataatatatggtagttcaca
agatatgatatacaataattttgttataaatatttcttttttaaaagtta
ttcttctatgtatgatatcaaataaaatgtctactgtagcagattggcta
atatttcattgtctttattagaatttgtcattcctttgtccatgacagtg
agtatgcacatttcactttaattacatccaaattcttagaatagatttca
gtttctaacatatatgattagtcattgccaatgaaacaaaacacatatcc
ttatttagttttgtgactactgctttgtccatactagatataaaaataaa
ggccttaaaagcacaacaaaattgccaacataaaatataattacaagcat
ggtcttttaattcaatgagatataaaagagatgtttcttaaaacaaatag
gtcacccatttgtttctgattaaaggttcaagtattgagtggtggatata
aaaagtcttatctattaaaagtataaagaaaataattttagtccccaagc
tgagtacctacttataaaaaggtcttgagtgatggtctacatgaaagtcc
gctgcttctttcctataagataataaaaatacaaacagttaaaatttata
aaaatattttagcttatattcataaactaaaataaagattaaagcacaca
cacatgatctatatataaactaattaatgttctttccactaaatagcata
tcccaagtaatgatcctacattatggaaagatataaaattaagtagagga
tattttttacttttttttataatgtacacttcactgtcttcattctacta
gcatcttcattctattgttaatacatgttagaatttcagatcagtagagg
tgttttgtacttaagtctgaccaaggtcacataaaaaatggacagctttc
tatttacaaaaatttgaaactaatttt
gaattctttatctctgaaaagtgttttaacttttcttggtagcattcggt
tttgatgtttactgcttttctttgacttgtaaaaccatttcacatattct
gcttgacactctgagccttggagattccttttgcccttttagtccatcca
ggcttcattcatatgacaattctaaatctagtatattcaccaactcacct
atgtatggtccagtactcaaaagtatgatctctgcttgagataatctttc
tctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtctgtgtctgtctgtctgtctgtctgtctgtgggttcttttcctat
cttccttatctttctggacccaccatgttttcagtttccattttaaattc
tgtgtgtgtacatgtttcttacttggctcagaactcctggaactaaaggt
tcattcattcattcttttaaaatctcaatacagattaagtagtgctatgt
aaatatgtattcatcaagtagggtcacagagctctttacctggttttctt
cagtcaacgtgggaattggtttaaaaccgaacaatttactttcccgtagc
atatctcccagaagaaaatgcacacaaacaagttctgcccaaggttgtga
aaaggcactttgactagaacagatcgattgattccctttgatctcgtggt
gggtgttgcctgggatgagagctagccaacagaaaggtaataaggggatg
ttgtgccctttgtttgtttttgcctgtgagaaagctgttcttcaagagcc
caatatctattaaaggaagattttctgctgttaagacttcctctttcaga
aatgttttgaaagaatgtccttttgaaaacctacctcttcagactatgtg
ggtctctgtctctgaagagtccctggcatgggcctcccctccgaagagat
ggggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166272980_166274206
seq2: B6Ng01-263K14.b_45_1271 (reverse)

seq1  AAAATTA-ATTCTAATTTTTG-AATTAG-AAGCTGTCCATTTTTTTATGT  47
      |||||||  ||| |||||||| || ||| |||||||||| ||||||||||
seq2  AAAATTAGTTTCAAATTTTTGTAAATAGAAAGCTGTCCA-TTTTTTATGT  49

seq1  GA-CTTGTTTAGATTTTAAGTAACAAACACTCTTACTGATCTGATA-TCT  95
      || |||| | |||  |||||||  ||||||   ||||||||||| | |||
seq2  GACCTTGGTCAGA-CTTAAGTACAAAACACCTCTACTGATCTGAAATTCT  98

seq1  AACATTGTATTAACAATAGAATG-AGATGCTAGTAGAATGGAAGACAGGT  144
      |||| |||||||||||||||||| ||||||||||||||| ||||||| ||
seq2  AACA-TGTATTAACAATAGAATGAAGATGCTAGTAGAAT-GAAGACA-GT  145

seq1  GAAGTGTAACATTAATAAAAAAAGT-AAAAATATCCTCTTACTTTAATTT  193
      ||||||| ||||||  ||||||||| |||||||||||| ||| |||||||
seq2  GAAGTGT-ACATTATAAAAAAAAGTAAAAAATATCCTC-TAC-TTAATTT  192

seq1  TATATCTTTCCAT-ATGTAGGATCATTACTTGGGATATGCTATTTAGTGG  242
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTCCATAATGTAGGATCATTACTTGGGATATGCTATTTAGTGG  242

seq1  AAAGAACATTAATTAGTTTATATATAGATCATGTGTGTGTGCTTTAATCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATTAATTAGTTTATATATAGATCATGTGTGTGTGCTTTAATCT  292

seq1  TTATTTTAGTTTATGAATATAAGCTAAAATATTTTTATAAATTTTAACTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGTTTATGAATATAAGCTAAAATATTTTTATAAATTTTAACTG  342

seq1  TTTGTATTTTTATTATCTTATAGGAAAGAAGCAGCGGACTTTCATGTAGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTTTATTATCTTATAGGAAAGAAGCAGCGGACTTTCATGTAGA  392

seq1  CCATCACTCAAGACCTTTTTATAAGTAGGTACTCAGCTTGGGGACTAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTCAAGACCTTTTTATAAGTAGGTACTCAGCTTGGGGACTAAAA  442

seq1  TTATTTTCTTTATACTTTTAATAGATAAGACTTTTTATATCCACCACTCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTTTATACTTTTAATAGATAAGACTTTTTATATCCACCACTCA  492

seq1  ATACTTGAACCTTTAATCAGAAACAAATGGGTGACCTATTTGTTTTAAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGAACCTTTAATCAGAAACAAATGGGTGACCTATTTGTTTTAAGA  542

seq1  AACATCTCTTTTATATCTCATTGAATTAAAAGACCATGCTTGTAATTATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCTTTTATATCTCATTGAATTAAAAGACCATGCTTGTAATTATA  592

seq1  TTTTATGTTGGCAATTTTGTTGTGCTTTTAAGGCCTTTATTTTTATATCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTGGCAATTTTGTTGTGCTTTTAAGGCCTTTATTTTTATATCT  642

seq1  AGTATGGACAAAGCAGTAGTCACAAAACTAAATAAGGATATGTGTTTTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGACAAAGCAGTAGTCACAAAACTAAATAAGGATATGTGTTTTGT  692

seq1  TTCATTGGCAATGACTAATCATATATGTTAGAAACTGAAATCTATTCTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGCAATGACTAATCATATATGTTAGAAACTGAAATCTATTCTAA  742

seq1  GAATTTGGATGTAATTAAAGTGAAATGTGCATACTCACTGTCATGGACAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGATGTAATTAAAGTGAAATGTGCATACTCACTGTCATGGACAA  792

seq1  AGGAATGACAAATTCTAATAAAGACAATGAAATATTAGCCAATCTGCTAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGACAAATTCTAATAAAGACAATGAAATATTAGCCAATCTGCTAC  842

seq1  AGTAGACATTTTATTTGATATCATACATAGAAGAATAACTTTTAAAAAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACATTTTATTTGATATCATACATAGAAGAATAACTTTTAAAAAAG  892

seq1  AAATATTTATAACAAAATTATTGTATATCATATCTTGTGAACTACCATAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATAACAAAATTATTGTATATCATATCTTGTGAACTACCATAT  942

seq1  ATTATAAAATGTTCCTAAACTTTGTTAGCATTATCATATACATTTGTTTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAATGTTCCTAAACTTTGTTAGCATTATCATATACATTTGTTTG  992

seq1  GCAATTATTCTTTGTTTTAGATTCTTTGTATGCTTTTATAATACTAAATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATTCTTTGTTTTAGATTCTTTGTATGCTTTTATAATACTAAATT  1042

seq1  ACAGCTCTTAGTTTAATATTGTCTATATAATTCATATGCAGAAAGTTTCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTTAGTTTAATATTGTCTATATAATTCATATGCAGAAAGTTTCA  1092

seq1  ATGAATAAATTAGCTGGTTCTGTGGCACTGAGACTTAACAAATGACTAGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAATTAGCTGGTTCTGTGGCACTGAGACTTAACAAATGACTAGC  1142

seq1  TAGAGAAACTGGAAGTCAGTCATGATCAGTATCTTCTCAGTAGCCCACCA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAACTGGAAGTCAGTCATGATCAGTATCTTCTCAGTAGCCCACCA  1192

seq1  TTCCCTTAGTTGTCACATGCCACATTAGAGAATTC  1227
      |||||||||||||||||||||||||||||||||||
seq2  TTCCCTTAGTTGTCACATGCCACATTAGAGAATTC  1227

seq1: chr1_166182196_166183143
seq2: B6Ng01-263K14.g_68_1025

seq1  GAATTCTTTATCTCTGAAAAGTGTTTTAACTTTTCTTGGTAGCATTCGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCTCTGAAAAGTGTTTTAACTTTTCTTGGTAGCATTCGGT  50

seq1  TTTGATGTTTACTGCTTTTCTTTGACTTGTAAAACCATTTCACATATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTTACTGCTTTTCTTTGACTTGTAAAACCATTTCACATATTCT  100

seq1  GCTTGACACTCTGAGCCTTGGAGATTCCTTTTGCCCTTTTAGTCCATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACACTCTGAGCCTTGGAGATTCCTTTTGCCCTTTTAGTCCATCCA  150

seq1  GGCTTCATTCATATGACAATTCTAAATCTAGTATATTCACCAACTCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATTCATATGACAATTCTAAATCTAGTATATTCACCAACTCACCT  200

seq1  ATGTATGGTCCAGTACTCAAAAGTATGATCTCTGCTTGAGATAATCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGTCCAGTACTCAAAAGTATGATCTCTGCTTGAGATAATCTTTC  250

seq1  TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTGTCTGTGTCTGTCTGTCTGTCTGTCTGTCTGTGGGTTCTTTTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTGTCTGTCTGTCTGTCTGTCTGTCTGTGGGTTCTTTTCCTAT  350

seq1  CTTCCTTATCTTTCTGGACCCACCATGTTTTCAGTTTCCATTTTAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTATCTTTCTGGACCCACCATGTTTTCAGTTTCCATTTTAAATTC  400

seq1  TGTGTGTGTACATGTTTCTTACTTGGCTCAGAACTCCTGGAACTAAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTACATGTTTCTTACTTGGCTCAGAACTCCTGGAACTAAAGGT  450

seq1  TCATTCATTCATTCTTTTAAAATCTCAATACAGATTAAGTAGTGCTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCATTCTTTTAAAATCTCAATACAGATTAAGTAGTGCTATGT  500

seq1  AAATATGTATTCATCAAGTAGGGTCACAGAGCTCTTTACCTGGTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTATTCATCAAGTAGGGTCACAGAGCTCTTTACCTGGTTTTCTT  550

seq1  CAGTCAACGTGGGAATTGGTTTAAAACCGAACAATTTACTTTCCCGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACGTGGGAATTGGTTTAAAACCGAACAATTTACTTTCCCGTAGC  600

seq1  ATATCTCCCAGAAGAAAATGCACACAAACAAGTTCTGCCCAAGGTTGTG-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATCTCCCAGAAGAAAATGCACACAAACAAGTTCTGCCCAAGGTTGTGA  650

seq1  AAAGGCACTTTGACTAGAACAGATCGATTGATTCCCTTTGATCTCGTGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACTTTGACTAGAACAGATCGATTGATTCCCTTTGATCTCGTGGT  700

seq1  GGGTGTTGCCTGGGATGAGAGCTAGCCAACAGAAAGGTAATAAGGGGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGCCTGGGATGAGAGCTAGCCAACAGAAAGGTAATAAGGGGATG  750

seq1  -TGTGCCCTTTGTTTGTTTTTGCCTGTGAG-AAGCTGTTCTTCAAGAGCC  797
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGTGCCCTTTGTTTGTTTTTGCCTGTGAGAAAGCTGTTCTTCAAGAGCC  800

seq1  AAATATCTATTAAAGGAAGATTTTCTGCTGTTAAGACTT-CTCTATCAGA  846
       |||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  CAATATCTATTAAAGGAAGATTTTCTGCTGTTAAGACTTCCTCTTTCAGA  850

seq1  AATGTTTTGAAAGAATGTCCTTT--GAGACCTACCTCTCCAGACTATGT-  893
      |||||||||||||||||||||||   | |||||||||| |||||||||| 
seq2  AATGTTTTGAAAGAATGTCCTTTTGAAAACCTACCTCTTCAGACTATGTG  900

seq1  GGTCTCTGTCTCTGAGGAGTCCCTGTCATGGTC--TCCCTCCGTAGAGAT  941
      ||||||||||||||| ||||||||| ||||| |   ||||||| ||||||
seq2  GGTCTCTGTCTCTGAAGAGTCCCTGGCATGGGCCTCCCCTCCGAAGAGAT  950

seq1  GGGAAAA-  948
      ||| ||| 
seq2  GGGGAAAA  958