BAC Information

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BAC

Clone NameB6Ng01-263O14
Chromosome1 (Build37)
Map Location 169,191,316 - 169,192,421
singlet/doubletsinglet
Overlap geneUck2
Upstream geneLOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik
Downstream geneLOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263O14.bB6Ng01-263O14.g
ACCGA067958GA067959
length1,1041,178
definitionB6Ng01-263O14.b B6Ng01-263O14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctctgcggaaacagtttttttttttttttctttctttgccct
taaatgttgctgtgagggaagccagaaaaactggaaaagttgcttttatt
aaagcaattcttaaaaattacattaattagtatatgtgtcagtgtgagca
tccactggcttgccctctggggtcagtcctttccacccaggtgggttccg
aggatctggttcagattgtcaagctcggcgccaggcacctttccccgggc
tccccagtggacggcagagggtgcggctcagtgtacgtgtgagtctctca
cccagcctccaccgagttttgctgagtggcttctggcaagcaaggccttg
cctctagaacttggttgtcttccaggtaaagtaggtgtagtcagcgacac
ctgcttctctccacacactggctggattaacaggtaagacggttaccttg
gtgacccccgatggcttggaatagaacctgatagctggagagctgtgtgt
ccttccttagagctgcattgaacagctttgagagtcccttctgggccttg
tagcctggtctgtctttgtctcatctgaggaccagtgcgtgcatcaggca
tcctcatagagcagtatgatggtttgtaagcgtctgtcctgatgcactct
ggctaggagaggctgtgcatctcgaccggtgcagaggagtattgatgtat
atgcaggccaactggtggccctttagacgatcccagatctaatgggcaca
catctctcaagcatcagcaccatctttctcttcaaggttgttgccaaggt
tacccccctgtcagtatcctggctcctgcttcttttccatgttgcccttt
attgtgagttagtcgtctaggctctcaattctgcatctgtgtgaatccca
agcacagaatcacataggtcactggggagcaggctttgaaacagtgggtg
gtatcaggctatagggccagggcttgggggtaccgtaagaccacaagctt
tctccagggtctgatttcccacccacttcctcacagcgctttcaactcaa
caacgactgtgtcgcgtctcgtctcacaggtgttctttatggatctctag
cact
gaattctcacctgcagtgaataccgaatggcagagaagcacctgaaaaaa
tgttcaatatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
attccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgaca
gcagatgctggcgaggatgtggagaaagaggaacactcctccattgttgg
tgggattgcaggcttgtacaaccactctggaaatccgtctggcggttcct
cagaaaattggacatagtactaccggaggatccagcaatagctctcctgg
gcatatatccagaagatgccccaactggtaagaaggacacatgctctact
atgttcatagcagccttatttataatagccagaagctggaaagaacccag
atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaattcctagcc
aaatggatggacctggagggcatcatcctgagtgaggtaacacattcaca
aaggaactcacacaatatgtactcactgataagtggatattagcccaaaa
cctaggatacccaagatataagatacaatttcctaaacacatgaaactca
agaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggg
aacaaaacacccttggaaggagttacagagacaaagtttggagctgagat
gaaaggatggaccatgtagagactgccttatccagggatccaccccataa
tcagcatccaaacgctgacaccattgcatacactagcaagattttatcga
aaggacccagatgtagctgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgcccacagtcagctaatggatggatcacagggctcc
caatggaggagctagagaaagtacccaaggagctaaagggatctgcaacc
tatagtgatcacattatgaactaccagtacccggagctcttgactctagc
tgcatatgtatcaaaggatgcctagtcgcatcactgaagagaagcccatg
gatcacaactttaatggcccagaaacggtaaccaggccaacggcattgcc
ggctaagggattggggtctacaaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169191316_169192421
seq2: B6Ng01-263O14.b_46_1149 (reverse)

seq1  AGTGCTAGAGATCTATAAAGAACAACTGTGAGACGAGGACGCGACACAGT  50
      ||||||||||||| |||||||||| ||||||||||| |||||||||||||
seq2  AGTGCTAGAGATCCATAAAGAACACCTGTGAGACGA-GACGCGACACAGT  49

seq1  CGTTGTTGGAGTGGAAAAGGCGCTGTGAGGGAAGTGGGTGGGAAATCAGA  100
      ||||||| |||| ||||  ||||||||| |||||||||||||||||||||
seq2  CGTTGTT-GAGTTGAAA--GCGCTGTGA-GGAAGTGGGTGGGAAATCAGA  95

seq1  CCCTGGAGAAAGC-TGTGGTCTTACGGTACCCCCAAGCCCTGGCCCTATA  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGAAAGCTTGTGGTCTTACGGTACCCCCAAGCCCTGGCCCTATA  145

seq1  GCCTGATACCA-CCACTGTTTCAAAGCCTGCT-CCCAGTGACCTATGTGA  197
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  GCCTGATACCACCCACTGTTTCAAAGCCTGCTCCCCAGTGACCTATGTGA  195

seq1  TTCTGTGCTTGGGATTCACACAGATGCAGAATTGAGAGCCTAGACGACTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCTTGGGATTCACACAGATGCAGAATTGAGAGCCTAGACGACTA  245

seq1  ACTCACAATAAAGGGCAACATGGAAAAGAAGCAGGAGCCAGGATACTGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAATAAAGGGCAACATGGAAAAGAAGCAGGAGCCAGGATACTGAC  295

seq1  AGGGGGGTAACCTTGGCAACAACCTTGAAGAGAAAGATGGTGCTGATGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGTAACCTTGGCAACAACCTTGAAGAGAAAGATGGTGCTGATGCT  345

seq1  TGAGAGATGTGTGCCCATTAGATCTGGGATCGTCTAAAGGGCCACCAGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATGTGTGCCCATTAGATCTGGGATCGTCTAAAGGGCCACCAGTT  395

seq1  GGCCTGCATATACATCAATACTCCTCTGCACCGGTCGAGATGCACAGCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCATATACATCAATACTCCTCTGCACCGGTCGAGATGCACAGCCT  445

seq1  CTCCTAGCCAGAGTGCATCAGGACAGACGCTTACAAACCATCATACTGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGCCAGAGTGCATCAGGACAGACGCTTACAAACCATCATACTGCT  495

seq1  CTATGAGGATGCCTGATGCACGCACTGGTCCTCAGATGAGACAAAGACAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGGATGCCTGATGCACGCACTGGTCCTCAGATGAGACAAAGACAG  545

seq1  ACCAGGCTACAAGGCCCAGAAGGGACTCTCAAAGCTGTTCAATGCAGCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTACAAGGCCCAGAAGGGACTCTCAAAGCTGTTCAATGCAGCTC  595

seq1  TAAGGAAGGACACACAGCTCTCCAGCTATCAGGTTCTATTCCAAGCCATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGGACACACAGCTCTCCAGCTATCAGGTTCTATTCCAAGCCATC  645

seq1  GGGGGTCACCAAGGTAACCGTCTTACCTGTTAATCCAGCCAGTGTGTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCACCAAGGTAACCGTCTTACCTGTTAATCCAGCCAGTGTGTGGA  695

seq1  GAGAAGCAGGTGTCGCTGACTACACCTACTTTACCTGGAAGACAACCAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAGGTGTCGCTGACTACACCTACTTTACCTGGAAGACAACCAAG  745

seq1  TTCTAGAGGCAAGGCCTTGCTTGCCAGAAGCCACTCAGCAAAACTCGGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGGCAAGGCCTTGCTTGCCAGAAGCCACTCAGCAAAACTCGGTG  795

seq1  GAGGCTGGGTGAGAGACTCACACGTACACTGAGCCGCACCCTCTGCCGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGTGAGAGACTCACACGTACACTGAGCCGCACCCTCTGCCGTC  845

seq1  CACTGGGGAGCCCGGGGAAAGGTGCCTGGCGCCGAGCTTGACAATCTGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGAGCCCGGGGAAAGGTGCCTGGCGCCGAGCTTGACAATCTGAA  895

seq1  CCAGATCCTCGGAACCCACCTGGGTGGAAAGGACTGACCCCAGAGGGCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCCTCGGAACCCACCTGGGTGGAAAGGACTGACCCCAGAGGGCAA  945

seq1  GCCAGTGGATGCTCACACTGACACATATACTAATTAATGTAATTTTTAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGATGCTCACACTGACACATATACTAATTAATGTAATTTTTAAG  995

seq1  AATTGCTTTAATAAAAGCAACTTTTCCAGTTTTTCTGGCTTCCCTCACAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTTAATAAAAGCAACTTTTCCAGTTTTTCTGGCTTCCCTCACAG  1045

seq1  CAACATTTAAGGGCAAAGAAAGAAAAAAAAAAAAAAACTGTTTCCGCAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTAAGGGCAAAGAAAGAAAAAAAAAAAAAAACTGTTTCCGCAGA  1095

seq1  GAAGAATTC  1106
      |||||||||
seq2  GAAGAATTC  1104