BAC Information

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BAC

Clone NameB6Ng01-263P10
Chromosome1 (Build37)
Map Location 85,279,053 - 85,343,744
singlet/doubletdoublet
Overlap geneLOC100040135, LOC639868
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263P10.bB6Ng01-263P10.g
ACCGA067994GA067995
length1,1421,143
definitionB6Ng01-263P10.b B6Ng01-263P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,279,053 - 85,280,191)(85,342,534 - 85,343,744)
sequence
gaattctcattttaacacttgtccttgaagcttgctccttctagttcaaa
actctgatatcttcttccttcccagctgatcatttaaaaaggttagggtt
gagatcagagagataactcggagttaaaacatccacatatacacacgtgc
aagtgcacaattaacagacaaaaacatagttgaattctttaaataaaaaa
gactgacagctctatgtgactataaaagactttgttttcttttcttctta
gcaagaagaaaaaaacatccgaactggtcaaattccaaaagaagacagca
gaaaaaaaagccccgtcaagatgagatgatgggtaaggggatgctggagg
agactccagcaagggggtacaggaggaggattcagcaaaggctgtagatc
tgatggagttcgttctgaactcactatataggcaggcacacaagatttct
tgtcagcacagcgaactggctttaaatttcaccagacctgttttgccact
gagtaaatggtgaactggaacatgttggaatcctgttctgaggttacaca
gcccaaggtgaagggtgcagagtgtcaggtttcctctttatttatacaca
ctaggatggcatccatccttcctaactaaaaggagagtaaataaactttg
ctactttgagataaggtgcagaagagcctgggtcctagccctgagaggca
gttcagaggaaaagcccccagaaaagcttcagaaaggtgttctcatgcct
gtggatgcagctgtccttggggaggcagcttccaaagtcccgagaggaaa
aagtgctgtgtcctcccctcctcagtgaaaggccactcatccatccacca
gtcctgtccactgcagagcctctgggcctctgccacccctcgcccagaag
ctgtcttcacgacaggcatagggctgtccctgcgatgctttagaggtgcc
cagtggccttcggtgttgcctgtctgaacatggggtgctacatggaagtc
ccttcctcactgcctgaaaaatccaagggcctgtgcctcattgtttacga
ggtctaggaacaggaatcagaatctgcctggatccgaatccctccatatt
tatttatttgggtaaatctttggttgtttgggttgggtttgg

gaattctactgttgcctcttaacattgcagccagcatggcatccctttga
gttttgaatacagaggagggacctgggagccttggttttatttgattttc
aggaggagctatagaggtgatggatttttctctctggggttacttggact
ctaggattctgagccttatgggtccttgactatgattggcacatcttcag
cctcattctcatggcagctactctgcagcgaggggggctgttggccatgg
tggacacatcctgggatggcaaagagaaagaaaatagcctagagccttga
atgttcgaggctaagtagaattattcatttagaaaccagaccctgcttcc
ttgcatggcttcacaaaggctccttggggactaaagccagcaaggggacc
ttgctttaattcaaacaatagtttgatgatcctctttttctcctagtaga
tgcacaagtccataaaaatagatgtggggagtagctactttaagagaaac
actttaggtagaatgaattaaaccagtattttcaatcaatgagttcaaga
gtgaatacactctgttaacagttcctgggaaccccctgaaggtgcacgag
gccacaacttctacaggtttgggtcaacgtaagattgagaaacacgtgtg
actggtcaggatggaaaatccctagtgagagattagggagaggctttatg
tgactacagtgtctcttttgatcttgtttgctttatcctctaatttgttt
agatgggaactaaacaagctcaacacttgagctgttcctacctaagagcc
tctaaataattaagcaaattttataggcaagatgacgcaaggctggaatc
tcagcacatggaatgcagaagcagaaaggatcaggagttcaagttcagcc
ttggctatatagggagtccaaggctagcctgggctaaagtgagaatatat
ctcagaagtaagattaatgctggtgatgaataaaacaattaagcaactgt
catttgactgtttgaatgataaatcagatctatactcactcaatcttctt
ctttcagcagagaacacaggacctgccatcgttccccagctgacctagtg
taagttactgactccttaggctacatctgatggaccgtctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85279053_85280191
seq2: B6Ng01-263P10.b_45_1186

seq1  GAATTCTCATTTTAACACTTGTCCTTGAAGCTTGCTCCTTCTAGTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTTAACACTTGTCCTTGAAGCTTGCTCCTTCTAGTTCAAA  50

seq1  ACTCTGATATCTTCTTCCTTCCCAGCTGATCATTTAAAAAGGTTAGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATATCTTCTTCCTTCCCAGCTGATCATTTAAAAAGGTTAGGGTT  100

seq1  GAGATCAGAGAGATAACTCGGAGTTAAAACATCCACATATACACACGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGAGAGATAACTCGGAGTTAAAACATCCACATATACACACGTGC  150

seq1  AAGTGCACAATTAACAGACAAAAACATAGTTGAATTCTTTAAATAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACAATTAACAGACAAAAACATAGTTGAATTCTTTAAATAAAAAA  200

seq1  GACTGACAGCTCTATGTGACTATAAAAGACTTTGTTTTCTTTTCTTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACAGCTCTATGTGACTATAAAAGACTTTGTTTTCTTTTCTTCTTA  250

seq1  GCAAGAAGAAAAAAACATCCGAACTGGTCAAATTCCAAAAGAAGACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGAAAAAAACATCCGAACTGGTCAAATTCCAAAAGAAGACAGCA  300

seq1  GAAAAAAAAGCCCCGTCAAGATGAGATGATGGGTAAGGGGATGCTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAGCCCCGTCAAGATGAGATGATGGGTAAGGGGATGCTGGAGG  350

seq1  AGACTCCAGCAAGGGGGTACAGGAGGAGGATTCAGCAAAGGCTGTAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAGCAAGGGGGTACAGGAGGAGGATTCAGCAAAGGCTGTAGATC  400

seq1  TGATGGAGTTCGTTCTGAACTCACTATATAGGCAGGCACACAAGATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGTTCGTTCTGAACTCACTATATAGGCAGGCACACAAGATTTCT  450

seq1  TGTCAGCACAGCGAACTGGCTTTAAATTTCACCAGACCTGTTTTGCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCACAGCGAACTGGCTTTAAATTTCACCAGACCTGTTTTGCCACT  500

seq1  GAGTAAATGGTGAACTGGAACATGTTGGAATCCTGTTCTGAGGTTACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATGGTGAACTGGAACATGTTGGAATCCTGTTCTGAGGTTACACA  550

seq1  GCCCAAGGTGAAGGGTGCAGAGTGTCAGGTTTCCTCTTTATTTATACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGTGAAGGGTGCAGAGTGTCAGGTTTCCTCTTTATTTATACACA  600

seq1  CTAGGATGGCATCCATCCTTCCTAACTAAAAGGAGAGTAAATAAACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATGGCATCCATCCTTCCTAACTAAAAGGAGAGTAAATAAACTTTG  650

seq1  CTACTTTGAGATAAGGTGCAGAAGAGCCTGGGTCCTAGCCCTGAGAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGAGATAAGGTGCAGAAGAGCCTGGGTCCTAGCCCTGAGAGGCA  700

seq1  GTTCAGAGGAAAAGCCCCCAGAAAAGCTTCAGAAAGGTGTTCTCATGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGGAAAAGCCCCCAGAAAAGCTTCAGAAAGGTGTTCTCATGCCT  750

seq1  GTGGATGCAGCTGTCCTTGGGGAGGCAGCTTCCAAAGTCCCGAGAGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCAGCTGTCCTTGGGGAGGCAGCTTCCAAAGTCCCGAGAGGAAA  800

seq1  AAGTGCTGTGTCCTCCCCTCCTCAGTG-AAGGCCACTCATCCATCCACCA  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTGCTGTGTCCTCCCCTCCTCAGTGAAAGGCCACTCATCCATCCACCA  850

seq1  GTCCTGTCCACTGCAGAGCCTCTGGGCCTCTGCCACCCCTCGCCCAGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCCACTGCAGAGCCTCTGGGCCTCTGCCACCCCTCGCCCAGAAG  900

seq1  CTGTCTTCACGACAGGCATAGGGCTGTCCCTGCGATGCTTTAGAGGTGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCACGACAGGCATAGGGCTGTCCCTGCGATGCTTTAGAGGTGCC  950

seq1  CAGTGGCCTTCGGGTGTTGCCTGTCTGAACAT-GGGTGCTACATGGAAGT  998
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  CAGTGGCCTTC-GGTGTTGCCTGTCTGAACATGGGGTGCTACATGGAAGT  999

seq1  CCCTTCCTCACTGCCTGAAAAATCCCA-GGCCTGTGCCTCATGGTTTACG  1047
      ||||||||||||||||||||||||| | |||||||||||||| |||||||
seq2  CCCTTCCTCACTGCCTGAAAAATCCAAGGGCCTGTGCCTCATTGTTTACG  1049

seq1  AGTCTTAGGAACAGGAATCAGAATCTGCCCTGATCCCGAATCCCTCCATA  1097
      ||   ||||||||||||||||||||||||  ||| |||||||||||||||
seq2  AGGTCTAGGAACAGGAATCAGAATCTGCCTGGAT-CCGAATCCCTCCATA  1098

seq1  TTTATTTATTTGGTTAAATCTTTGTTTGTTTGG--TTGGTTTGG  1139
      ||||||||||||| |||||||||| ||||||||  | |||||||
seq2  TTTATTTATTTGGGTAAATCTTTGGTTGTTTGGGTTGGGTTTGG  1142


seq1: chr1_85342534_85343744
seq2: B6Ng01-263P10.g_1_1209 (reverse)

seq1  ATGAGACGGGGCCTTTCAGGGATTGTAGC--TAGGAGTCAGT-ACTTACA  47
      |||||||  || |  ||||    ||||||   |||||||||| |||||||
seq2  ATGAGAC--GGTCCATCAG---ATGTAGCCTAAGGAGTCAGTAACTTACA  45

seq1  CTAGGGTCAGCTGGGGAACGAT-GCAAGTTCTGTGTTCTCTGCTGAAAG-  95
      ||| |||||||||||||||||| ||| || ||||||||||||||||||| 
seq2  CTA-GGTCAGCTGGGGAACGATGGCAGGTCCTGTGTTCTCTGCTGAAAGA  94

seq1  AGAAGATTTGAGTGAGTATAAGATCTGATTATTCATTCAAACAGTCAAAT  145
      |||||| |||||||||||| ||||||||||  ||||||||||||||||||
seq2  AGAAGA-TTGAGTGAGTAT-AGATCTGATTTATCATTCAAACAGTCAAAT  142

seq1  GACAGTTGCTTAAATTTGTTTTA-TCATCACCAGCATTAATCTTACTTCT  194
      |||||||||||||  |||||||| ||||||||||||||||||||||||||
seq2  GACAGTTGCTTAA--TTGTTTTATTCATCACCAGCATTAATCTTACTTCT  190

seq1  GAGATATA-TCTCACTTTAGCCCAGGCTAGCCTTGGACTCCCTATATAGC  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATATTCTCACTTTAGCCCAGGCTAGCCTTGGACTCCCTATATAGC  240

seq1  CAAGGCTGAACTTGAACTCCTGATCC-TTCTGCTTCTGCATTCCATGTGC  292
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAGGCTGAACTTGAACTCCTGATCCTTTCTGCTTCTGCATTCCATGTGC  290

seq1  TGAGATTCCAGCCTTGCGTCATCTTGCCTATAAAATTTGCTTAATTATTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCCAGCCTTGCGTCATCTTGCCTATAAAATTTGCTTAATTATTT  340

seq1  AGAGGCTCTTAGGTAGGAACAGCTCAAGTGTTGAGCTTGTTTAGTTCCCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCTTAGGTAGGAACAGCTCAAGTGTTGAGCTTGTTTAGTTCCCA  390

seq1  TCTAAACAAATTAGAGGATAAAGCAAACAAGATCAAAAGAGACACTGTAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAAATTAGAGGATAAAGCAAACAAGATCAAAAGAGACACTGTAG  440

seq1  TCACATAAAGCCTCTCCCTAATCTCTCACTAGGGATTTTCCATCCTGACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAAGCCTCTCCCTAATCTCTCACTAGGGATTTTCCATCCTGACC  490

seq1  AGTCACACGTGTTTCTCAATCTTACGTTGACCCAAATCTGTAGAAGTTGT  542
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTCACACGTGTTTCTCAATCTTACGTTGACCCAAACCTGTAGAAGTTGT  540

seq1  GGCCTCGTGCACCTTCAGGGGGTTCCCAGGAACTGTTAACAGAGTGTATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGTGCACCTTCAGGGGGTTCCCAGGAACTGTTAACAGAGTGTATT  590

seq1  CACTCTTGAACTCATTGATTGAAAATACTGGTTTAATTCATTCTACCTAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGAACTCATTGATTGAAAATACTGGTTTAATTCATTCTACCTAA  640

seq1  AGTGTTTCTCTTAAAGTAGCTACTCCCCACATCTATTTTTATGGACTTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTCTTAAAGTAGCTACTCCCCACATCTATTTTTATGGACTTGT  690

seq1  GCATCTACTAGGAGAAAAAGAGGATCATCAAACTATTGTTTGAATTAAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTACTAGGAGAAAAAGAGGATCATCAAACTATTGTTTGAATTAAAG  740

seq1  CAAGGTCCCCTTGCTGGCTTTAGTCCCCAAGGAGCCTTTGTGAAGCCATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCCCCTTGCTGGCTTTAGTCCCCAAGGAGCCTTTGTGAAGCCATG  790

seq1  CAAGGAAGCAGGGTCTGGTTTCTAAATGAATAATTCTACTTAGCCTCGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGCAGGGTCTGGTTTCTAAATGAATAATTCTACTTAGCCTCGAA  840

seq1  CATTCAAGGCTCTAGGCTATTTTCTTTCTCTTTGCCATCCCAGGATGTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGGCTCTAGGCTATTTTCTTTCTCTTTGCCATCCCAGGATGTGT  890

seq1  CCACCATGGCCAACAGCCCCCCTCGCTGCAGAGTAGCTGCCATGAGAATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGGCCAACAGCCCCCCTCGCTGCAGAGTAGCTGCCATGAGAATG  940

seq1  AGGCTGAAGATGTGCCAATCATAGTCAAGGACCCATAAGGCTCAGAATCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAGATGTGCCAATCATAGTCAAGGACCCATAAGGCTCAGAATCC  990

seq1  TAGAGTCCAAGTAACCCCAGAGAGAAAAATCCATCACCTCTATAGCTCCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCAAGTAACCCCAGAGAGAAAAATCCATCACCTCTATAGCTCCT  1040

seq1  CCTGAAAATCAAATAAAACCAAGGCTCCCAGGTCCCTCCTCTGTATTCAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAATCAAATAAAACCAAGGCTCCCAGGTCCCTCCTCTGTATTCAA  1090

seq1  AACTCAAAGGGATGCCATGCTGGCTGCAATGTTAAGAGGCAACAGTAGAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAGGGATGCCATGCTGGCTGCAATGTTAAGAGGCAACAGTAGAA  1140

seq1  TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  1192
      |||                                               
seq2  TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  1190

seq1  NNNNNNNNNNNNNNNNNNN  1211
                         
seq2  NNNNNNNNNNNNNNNNNNN  1209


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