BAC Information

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BAC

Clone NameB6Ng01-264F09
Chromosome1 (Build37)
Map Location 175,033,740 - 175,146,876
singlet/doubletdoublet
Overlap geneOlfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404
Upstream geneCopa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104
Downstream geneFcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264F09.bB6Ng01-264F09.g
ACCGA068266GA068267
length1,111964
definitionB6Ng01-264F09.b B6Ng01-264F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,145,755 - 175,146,876)(175,033,740 - 175,034,702)
sequence
gaattctgatgacatagagggaaacctctagttatcaactgttaacgtgt
tctggttttgctgataccataagataaggcattattagaaacaacttaaa
ataactgcatattcaccaactgaaagaaatgaaatttacaaatgaaccta
attaagatgaaagtggcttctgccacatggctctgcgtagggcatctttg
acctccttattccgcagagtgtataccaaaggattcagtagaggggtgat
aagagtgtaggtcactgagatgagtctttcctgccccagcaagctctggg
acttaggtttcatgtagatgattgcagtgcagccatagtggatgatgacc
actgtgaggtgggaggcacaggtggcaaaggccttcttccgtccctcagc
agaggcaatcttgaggatggtggagatgatcactacataggagatgaaga
ccacgcccattggtagaataagaacaaacacgctgactacaaagttgatg
atctcattgatagtggtgtctgtgcaggccagcttcagcaggggtctcac
atcacagaagaagtgggggataacaaatctatcacagaagggcaagctaa
atactgatgtaacttggactatagccatgcctaggccaattcccagtgac
ccagatgctaagtggacacaagccttcctacccatgatgactgaatacct
tagggggttgcaaatggccacataacggtcatatcccatgaccatgagta
agaaacagttgttgatgccaaaagttagataaaaaaagatctggaccaca
cagtctcgaaaagcaatcgtgtggtaaggattgaggaggtcagaaagcat
gcgtggtataatagtcacggtatagcaggtatcagagatagacaatatgg
ccagaaagaagtacatgggagtatgtagatgatgatccaggtgaataata
ctcacataatcacatttgccagacagagtgagaaaatacaatgctaggaa
aatagcaaaaagcagccctgtgctgccaaccaagccggagaaccttcaac
agacctctgtacaagttgtgtttgacttagcattgagactagtatatgct
caggaattgag
gaattcctctctccctatcttcttctttcagaacctctcattgctctagt
ggttattactgtctgcattttgcttatttttgattgtatgcatttatgcc
attgttgaacatgtatgcgtgcttaaataatagtacattgttcagcacat
atagtttgaataaaagagtcaaaacatattttatatggtttggtaagatt
tgagtcctttaaaattcagtgttatattttaattttttgggatgggattt
tactgtataaatgtaaatgcctttttaaaaagccagcagtaggattgttt
ccagaagttataaagttttaagtattttaattcctgcctttattatttat
cccaagtatttcccccaattttgtgcctttttattttctttatggtacat
tttattgagcaaacagtggtttggtgtatccaaatacattcttgtgtgct
atagtttttactttctccattgtctatgagaaaaataacctacttcaata
tcagattgttcttttaacttggtgcaaagcatggaaatattttgttttca
gaaatcagtgaatccagagttgatattataaatagtgcaaggtgtatttt
caaattcattttaggtgggtgactagttaacccatccctctacctgaagc
ttacttcacgtccccactgttctacatctagacttctctgatagtctgtg
tgagcatgggttcatttaagcacgttctatggttacattagttagtttca
ccctttacaaaaactccatagttttagcagctataatttcataataaatt
ttatcaaggaagttatcttaatgttttttcttcctgactgaactgtgata
tttgacagattttagatatatgcttttggaattgcactaaattcattgtc
tgtctgtctgtctgtctgtctgtcctctctgtgtatgtgtctgattattg
agtgtatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175145755_175146876
seq2: B6Ng01-264F09.b_47_1157 (reverse)

seq1  CTCATTTCCTGAAGCATATACTAGTCTCAATGCTAAAGTCAAACACAACC  50
      |||| |||||| |||||||||||||||||||||| |||||||||||||| 
seq2  CTCAATTCCTG-AGCATATACTAGTCTCAATGCT-AAGTCAAACACAAC-  47

seq1  TTTGTAACAGAGTTCCTGTTTGAAGGTTTCTCCGGCTTTGGTTGGCAGCA  100
       |||| |||||| | ||| ||||||| ||||||||| |||||||||||||
seq2  -TTGT-ACAGAGGT-CTG-TTGAAGG-TTCTCCGGC-TTGGTTGGCAGCA  91

seq1  CAGGCTTGCCTTTTTTGCTATTTTCCTAGCATTGTATTTTCTCACTCTGT  150
      ||||  |||  |||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGC--TTTTTGCTATTTTCCTAGCATTGTATTTTCTCACTCTGT  139

seq1  CTGGC-AATGTGATTATTGTGAGTATTATTCACCTGGATCATCATCTACA  199
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGGCAAATGTGATTA-TGTGAGTATTATTCACCTGGATCATCATCTACA  188

seq1  TACTCCCATGTACTTCTTTCTGGCCATATTGTCTATCTCTGATACCTGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCATGTACTTCTTTCTGGCCATATTGTCTATCTCTGATACCTGCT  238

seq1  ATACCGTGACTATTATACCACGCATGCTTTCTGACCTCCTCAATCCTTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGTGACTATTATACCACGCATGCTTTCTGACCTCCTCAATCCTTAC  288

seq1  CACACGATTGCTTTTCGAGACTGTGTGGTCCAGATCTTTTTTTATCTAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGATTGCTTTTCGAGACTGTGTGGTCCAGATCTTTTTTTATCTAAC  338

seq1  TTTTGGCATCAACAACTGTTTCTTACTCATGGTCATGGGATATGACCGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCATCAACAACTGTTTCTTACTCATGGTCATGGGATATGACCGTT  388

seq1  ATGTGGCCATTTGCAACCCCCTAAGGTATTCAGTCATCATGGGTAGGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCCATTTGCAACCCCCTAAGGTATTCAGTCATCATGGGTAGGAAG  438

seq1  GCTTGTGTCCACTTAGCATCTGGGTCACTGGGAATTGGCCTAGGCATGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTCCACTTAGCATCTGGGTCACTGGGAATTGGCCTAGGCATGGC  488

seq1  TATAGTCCAAGTTACATCAGTATTTAGCTTGCCCTTCTGTGATAGATTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCAAGTTACATCAGTATTTAGCTTGCCCTTCTGTGATAGATTTG  538

seq1  TTATCCCCCACTTCTTCTGTGATGTGAGACCCCTGCTGAAGCTGGCCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCCCACTTCTTCTGTGATGTGAGACCCCTGCTGAAGCTGGCCTGC  588

seq1  ACAGACACCACTATCAATGAGATCATCAACTTTGTAGTCAGCGTGTTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACCACTATCAATGAGATCATCAACTTTGTAGTCAGCGTGTTTGT  638

seq1  TCTTATTCTACCAATGGGCGTGGTCTTCATCTCCTATGTAGTGATCATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCTACCAATGGGCGTGGTCTTCATCTCCTATGTAGTGATCATCT  688

seq1  CCACCATCCTCAAGATTGCCTCTGCTGAGGGACGGAAGAAGGCCTTTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCCTCAAGATTGCCTCTGCTGAGGGACGGAAGAAGGCCTTTGCC  738

seq1  ACCTGTGCCTCCCACCTCACAGTGGTCATCATCCACTATGGCTGCACTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCCTCCCACCTCACAGTGGTCATCATCCACTATGGCTGCACTGC  788

seq1  AATCATCTACATGAAACCTAAGTCCCAGAGCTTGCTGGGGCAGGAAAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTACATGAAACCTAAGTCCCAGAGCTTGCTGGGGCAGGAAAGAC  838

seq1  TCATCTCAGTGACCTACACTCTTATCACCCCTCTACTGAATCCTTTGGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCAGTGACCTACACTCTTATCACCCCTCTACTGAATCCTTTGGTA  888

seq1  TACACTCTGCGGAATAAGGAGGTCAAAGATGCCCTACGCAGAGCCATGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCTGCGGAATAAGGAGGTCAAAGATGCCCTACGCAGAGCCATGTG  938

seq1  GCAGAAGCCACTTTCATCTTAATTAGGTTCATTTGTAAATTTCATTTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCCACTTTCATCTTAATTAGGTTCATTTGTAAATTTCATTTCTT  988

seq1  TCAGTTGGTGAATATGCAGTTATTTTAAGTTGTTTCTAATAATGCCTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGTGAATATGCAGTTATTTTAAGTTGTTTCTAATAATGCCTTAT  1038

seq1  CTTATGGTATCAGCAAAACCAGAACACGTTAACAGTTGATAACTAGAGGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTATCAGCAAAACCAGAACACGTTAACAGTTGATAACTAGAGGT  1088

seq1  TTCCCTCTATGTCATCAGAATTC  1122
      |||||||||||||||||||||||
seq2  TTCCCTCTATGTCATCAGAATTC  1111

seq1: chr1_175033740_175034702
seq2: B6Ng01-264F09.g_67_1030

seq1  GAATTCCTCTCTCCCTATCTTCTTCTTTCAGAACCTCTCATTGCTCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCTCCCTATCTTCTTCTTTCAGAACCTCTCATTGCTCTAGT  50

seq1  GGTTATTACTGTCTGCATTTTGCTTATTTTTGATTGTATGCATTTATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTACTGTCTGCATTTTGCTTATTTTTGATTGTATGCATTTATGCC  100

seq1  ATTGTTGAACATGTATGCGTGCTTAAATAATAGTACATTGTTCAGCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGAACATGTATGCGTGCTTAAATAATAGTACATTGTTCAGCACAT  150

seq1  ATAGTTTGAATAAAAGAGTCAAAACATATTTTATATGGTTTGGTAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGAATAAAAGAGTCAAAACATATTTTATATGGTTTGGTAAGATT  200

seq1  TGAGTCCTTTAAAATTCAGTGTTATATTTTAATTTTTTGGGATGGGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTTTAAAATTCAGTGTTATATTTTAATTTTTTGGGATGGGATTT  250

seq1  TACTGTATAAATGTAAATGCCTTTTTAAAAAGCCAGCAGTAGGATTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATAAATGTAAATGCCTTTTTAAAAAGCCAGCAGTAGGATTGTTT  300

seq1  CCAGAAGTTATAAAGTTTTAAGTATTTTAATTCCTGCCTTTATTATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTTATAAAGTTTTAAGTATTTTAATTCCTGCCTTTATTATTTAT  350

seq1  CCCAAGTATTTCCCCCAATTTTGTGCCTTTTTATTTTCTTTATGGTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTATTTCCCCCAATTTTGTGCCTTTTTATTTTCTTTATGGTACAT  400

seq1  TTTATTGAGCAAACAGTGGTTTGGTGTATCCAAATACATTCTTGTGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAGCAAACAGTGGTTTGGTGTATCCAAATACATTCTTGTGTGCT  450

seq1  ATAGTTTTTACTTTCTCCATTGTCTATGAGAAAAATAACCTACTTCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTTACTTTCTCCATTGTCTATGAGAAAAATAACCTACTTCAATA  500

seq1  TCAGATTGTTCTTTTAACTTGGTGCAAAGCATGGAAATATTTTGTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGTTCTTTTAACTTGGTGCAAAGCATGGAAATATTTTGTTTTCA  550

seq1  GAAATCAGTGAATCCAGAGTTGATATTATAAATAGTGCAAGGTGTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGTGAATCCAGAGTTGATATTATAAATAGTGCAAGGTGTATTTT  600

seq1  CAAATTCATTTTAGGTGGGTGACTAGTTAACCCATCCCTCTACCTGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCATTTTAGGTGGGTGACTAGTTAACCCATCCCTCTACCTGAAGC  650

seq1  TTACTTC-CTTCCCCACTGTTCTACATCTAGACTTCTCTGATAGTCTGTG  699
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCACGTCCCCACTGTTCTACATCTAGACTTCTCTGATAGTCTGTG  700

seq1  TGAGCATGGGTTCATTTAAGCACGTTCTATGGTTACATTAGTTAGTTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGGTTCATTTAAGCACGTTCTATGGTTACATTAGTTAGTTTCA  750

seq1  CCCTTTACAAAAACTCCATAGTTTTAGCAGCTATAATTTCATAATAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACAAAAACTCCATAGTTTTAGCAGCTATAATTTCATAATAAATT  800

seq1  TTATCAAGGAAGTTATCTTAATG-TTTTTCTTCCTGACTGAACTGTGATA  848
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTATCAAGGAAGTTATCTTAATGTTTTTTCTTCCTGACTGAACTGTGATA  850

seq1  TTTGACAGATTTTAGATATATGCTTTTGGAATTGCACTAAATTCATTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGATTTTAGATATATGCTTTTGGAATTGCACTAAATTCATTGTC  900

seq1  TGTCTGTCTGTCTGTCTGTCTGT-CTCTCTGTTGTATGTGTTCTGATTAT  947
      ||||||||||||||||||||||| ||||||| |||||||| |||||||||
seq2  TGTCTGTCTGTCTGTCTGTCTGTCCTCTCTG-TGTATGTG-TCTGATTAT  948

seq1  TGAGTGTATGTGTGTG  963
      ||||||||||||||||
seq2  TGAGTGTATGTGTGTG  964