BAC Information

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BAC

Clone NameB6Ng01-264J11
Chromosome6 (Build37)1 (Build37)
Map Location 17,937,841 - 17,938,81627,663,706 - 27,663,983
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264J11.bB6Ng01-264J11.g
ACCGA068458GA068459
length982414
definitionB6Ng01-264J11.b B6Ng01-264J11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,937,841 - 17,938,816)(27,663,706 - 27,663,983)
sequence
gaattcactgttaatttagtcgcatgaagagatggtggctttgggactct
catgaaagctttcccagtgtccaggataccggaagctgtgaccccaccag
gtcttccctgtgctaagccctgagttgccactttcctgctcattggtcct
gtttactgaagtcatgatacgatacgccaagagaacagatggagatgtgg
ctcaggggtagaggcactcgcctggcaaggacaagaccctggcttgaccc
ctgtcactagaaggggagggaagaaagggaggagaggagggcagtcttgg
ggttcagtcattttgagatgtgtgagaagctaatgccagctctgacaaga
acaccagcgatttgctgtccatgggctttaggctgagtgatttggacaag
gatggaaaaatgaagaccaaagtatgagatatcaagaaagcaccagttga
tgctggctgtatactggcagacatcctattagctacgacagctctacgga
gaatttatatatagaagaagaagcagattatgcagcctgaagagaagtag
acttatcaacttcattttttttcatctaacaccaaaaacataaattgggg
cctttggccactccattttctctgaatgtccttttctggcagaagtcaat
ccctatttccacattgatatccctgtaatgacagctgtattgtttaaata
tggtctccaagttacagactgcatgtaatatgatacagtcatgttaccag
ctttaaaggagacatcctgtgctatcttactctcggctgcattctcacat
cttacaagcattaaacaaacacaggagtgtcaggccttaaggttggtgga
tccctagccatgtttcttcaacatacaacatgactttcatgggattctga
gtatgggagattgggtccaggcttctgaagatcttctctgatcagcaata
cactggtccttcaaaatgtggcaatgcgcaaa
atagataagaagatgggcctgggaacaagcattctgagtgaggtagacta
aactcagaaaaacaaacatttcatgttttggctcatttgtagatgttagc
tgtgaatctttagctatgtatgttccatttgaaatactcactgagagcaa
gggagagatgttcaatagaaaggaagggagatagatgcagtggtgtacaa
gcttgaacaaaattatagaaagggttaaattagagtgtgggatgggaggg
caggataaacaatggaatacagagaaggagtgataaataaaataacacca
aagagatttggaaaaactaatatggaaatgcacttaatactagagcgagg
cagacaggcagacaggcagacaaacagacagacagacagtgtgtgtgagt
ggtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_17937841_17938816
seq2: B6Ng01-264J11.b_47_1028

seq1  GAATTCACTGTTAATTTAGTCGCATGAAGAGATGGTGGCTTTGGGACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTAATTTAGTCGCATGAAGAGATGGTGGCTTTGGGACTCT  50

seq1  CATGAAAGCTTTCCCAGTGTCCAGGATACCGGAAGCTGTGACCCCACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGCTTTCCCAGTGTCCAGGATACCGGAAGCTGTGACCCCACCAG  100

seq1  GTCTTCCCTGTGCTAAGCCCTGAGTTGCCACTTTCCTGCTCATTGGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCTGTGCTAAGCCCTGAGTTGCCACTTTCCTGCTCATTGGTCCT  150

seq1  GTTTACTGAAGTCATGATACGATACGCCAAGAGAACAGATGGAGATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGAAGTCATGATACGATACGCCAAGAGAACAGATGGAGATGTGG  200

seq1  CTCAGGGGTAGAGGCACTCGCCTGGCAAGGACAAGACCCTGGCTTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGTAGAGGCACTCGCCTGGCAAGGACAAGACCCTGGCTTGACCC  250

seq1  CTGTCACTAGAAGGGGAGGGAAGAAAGGGAGGAGAGGAGGGCAGTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTAGAAGGGGAGGGAAGAAAGGGAGGAGAGGAGGGCAGTCTTGG  300

seq1  GGTTCAGTCATTTTGAGATGTGTGAGAAGCTAATGCCAGCTCTGACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTCATTTTGAGATGTGTGAGAAGCTAATGCCAGCTCTGACAAGA  350

seq1  ACACCAGCGATTTGCTGTCCATGGGCTTTAGGCTGAGTGATTTGGACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCGATTTGCTGTCCATGGGCTTTAGGCTGAGTGATTTGGACAAG  400

seq1  GATGGAAAAATGAAGACCAAAGTATGAGATATCAAGAAAGCACCAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAAATGAAGACCAAAGTATGAGATATCAAGAAAGCACCAGTTGA  450

seq1  TGCTGGCTGTATACTGGCAGACATCCTATTAGCTACGACAGCTCTACGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGTATACTGGCAGACATCCTATTAGCTACGACAGCTCTACGGA  500

seq1  GAATTTATATATAGAAGAAGAAGCAGATTATGCAGCCTGAAGAGAAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATATATAGAAGAAGAAGCAGATTATGCAGCCTGAAGAGAAGTAG  550

seq1  ACTTATCAACTTCATTTTTTTTCATCTAACACCAAAAACATAAATTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCAACTTCATTTTTTTTCATCTAACACCAAAAACATAAATTGGGG  600

seq1  CCTTTGGCCACTCCATTTTCTCTGAATGTCCTTTTCTGGCAGAAGTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCCACTCCATTTTCTCTGAATGTCCTTTTCTGGCAGAAGTCAAT  650

seq1  CCCTATTTCCACATTGATATCCCTGTAATGACAGCTGTATTGTTTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTCCACATTGATATCCCTGTAATGACAGCTGTATTGTTTAAATA  700

seq1  TGGTCTCCAAGTTACAGACTGCATGTAATATGATACAGTCATGTTACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCAAGTTACAGACTGCATGTAATATGATACAGTCATGTTACCAG  750

seq1  CTTTAAAGGAGACATCCTGTGCTATCTTACTCTCGGCTGCATTCTCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGAGACATCCTGTGCTATCTTACTCTCGGCTGCATTCTCACAT  800

seq1  CTTACAAGCATTAAACAAACACAGGAGTGTCAGGCCTTAAGGTTGGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAGCATTAAACAAACACAGGAGTGTCAGGCCTTAAGGTTGGTGGA  850

seq1  T-CCTAGCCAATGTTCTTCAACATACAACATGACTTTCATGGGATTCTGA  899
      | ||||||||   |||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGCCATGTTTCTTCAACATACAACATGACTTTCATGGGATTCTGA  900

seq1  GTATGGGAGATTGGGTCCCAGGC-TCTGAAGATC-TCTCTG-TCAGCAAT  946
      |||||||||||||||| |||||| |||||||||| |||||| ||||||||
seq2  GTATGGGAGATTGGGT-CCAGGCTTCTGAAGATCTTCTCTGATCAGCAAT  949

seq1  ACACTGGTCC-TCAAAATG-GGC-ATGCGCAAA  976
      |||||||||| |||||||| ||| |||||||||
seq2  ACACTGGTCCTTCAAAATGTGGCAATGCGCAAA  982

seq1: chr1_27663706_27663983
seq2: B6Ng01-264J11.g_420_483 (reverse)

seq1  CACACACACACACCACACTCACACATACATACAATACAATACAATACAAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACAATACAATACAATACAATGCAACTTAGGATCAAGTAGAATGTAGTAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGATTAATATCCCTCAGCATATTTTTATTACAAATATGATTCTAGTGGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTTTAACTGTGGCCTAGTAGATAGATATTCTCTGCTATAATATATATT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAGATAGATATA-TGGGCAGATATAGATGTGTTGGGAGGTGAGCTCATGT  249
       | | | | | |     || | | |  ||| |               | |
seq2  CACACACACACACCACTCACACACA-CTGTCT--------------GTCT  35

seq1  GTCTGTTTGTCTGTCTGTCTGTCTGTCTG  278
      ||||||||||||| ||||||| |||||||
seq2  GTCTGTTTGTCTGCCTGTCTGCCTGTCTG  64