BAC Information

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BAC

Clone NameB6Ng01-264L06
Chromosome1 (Build37)
Map Location 3,404,456 - 3,405,574
singlet/doubletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264L06.bB6Ng01-264L06.g
ACCGA068538GA068539
length1,1111,188
definitionB6Ng01-264L06.b B6Ng01-264L06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaaagacctaagggagtttagaacttgggacatgtgaccaaga
actcagaaatttttgtttcatcttaatagtgaaagcgaatgtcaaaggtt
agtggtcaagcatgtgcccacatggtctatccaggagtcattaaaaggcc
aggctgagtagatgatctctgatgttgtcacttttagttttgtggtggta
acttagtaactgtagggagccctcattcacatagccctcaatcacatctg
ttgattcagttaacaaaataatgcaagaaaaaggtcttgggccttaagtg
tattaggtaagggattgtctactttttttttcttgtcattatgttccaag
tataataatttgcagagcatctacattgtatgaggtatcataagcaatac
acagatgatttgacatacaaaaaaggcatatattccattttactttagat
gtaaaactacaatttgacttatgtagcaagtcccagatccaatctgttaa
gtacacaaagggaccatgaactcaatttagtttgtttagaactagactgg
cagaatggcagagaagacattgactcataacagactgttgtctacagatc
ttcctcagcagaagagcattgctcagtgtcaggatccctgtttccaaaga
tgggctccataaagcagctctaggactgctgtgtgggatcacagtgtact
atgtaatgttcactataacaattcctatgacacaatcatgaattcagtgc
agtacttggttttgatagccatgtacacttggttgcatactgaagcctta
ttcaaaagccatgttcctcttaggaactgtaaaggttaagaaaacaaaac
taggatttactaggttgggccagtgccagtctaccaacccagatatccca
atgctttccagatgggttttaattgttcatttttaatttcccactttgct
tgccatgggtcagaaagagcatatttttatcttttaagtagatttagttg
tatgtgccaatgagttactgacttctgtgtttggatataaagtttttcta
aggccatgatgctgtgaaagacggcagaatctttgagagactagcagtag
aggctagacat

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gataattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccaaaagatgccccaactagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagttggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcacattcacaaaggaacacacacaatatatac
tcactgataagtggatattagcccaaaacctaggatacccaagatataag
atacaatttcctaaacacatgaaactcaagaaaaatgaagactgaagtgt
ggacactatgcccctccttagaagtgggaacaaaacacccttggaaggag
ttacagagacaaagtttggagctgagatgaaaggatggaccatgtagaga
ctgccatatccagggatccaccccataatcagcatccaaacgctgacacc
attgcatacactagcaagattttatcgaaaggacccagatgtagctgtct
tttgtgagactaagttcggaactaaaacgaaaggatggactgtccagaga
ctaccccaacttggtatcctacccataataagcctcccaatgcagacact
attgcatatgccagcagatttgatgaagagaccctggtatagctgttctt
gtctgaacctatgccagtgcctggcaaatacagaaaatgatggaacacag
aacccccatgggagaaactagaagaaaggcacccaagagttggacggttc
tgcaccctattaggttgaacacaaaatgaataccagtactcaggccagtg
ttctctagctgcatatgtaagccaaaaaaatggcccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3404456_3405574
seq2: B6Ng01-264L06.b_46_1156 (reverse)

seq1  ATGTCTAAGCTTCTACTGCTAAGTCCTTCTCAAAGATTCTGCCGTCTTTC  50
      |||||| ||| ||||||||| ||||  |||||||||||||||||||||||
seq2  ATGTCT-AGCCTCTACTGCT-AGTC--TCTCAAAGATTCTGCCGTCTTTC  46

seq1  AACAGCATCATGGGCCCTTAGAAAAAACTTTATATCCAAAACACAGAAGT  100
       ||||||||||||  |||||| ||||||||||||||| ||||||||||||
seq2  -ACAGCATCATGG--CCTTAG-AAAAACTTTATATCC-AAACACAGAAGT  91

seq1  CAGTAACTCATTTGGCACATAACAACTAAATCTACTTAAAAGAT-AAAAT  149
      |||||||||| ||||||||| ||||||||||||||||||||||| |||||
seq2  CAGTAACTCA-TTGGCACAT-ACAACTAAATCTACTTAAAAGATAAAAAT  139

seq1  ATGCTCTTTCTGA-CCATGGCAAGCAAAGTGGGAAATTAAAAATGAACAA  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTTCTGACCCATGGCAAGCAAAGTGGGAAATTAAAAATGAACAA  189

seq1  TTAAAA-CCATCTGGAAAGCATTGGGATATCTGGGTTGGTAGACTGGCAC  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCCATCTGGAAAGCATTGGGATATCTGGGTTGGTAGACTGGCAC  239

seq1  TGGCCCAACCTAGTAAATCCTAGTTTTGTTTTCTTAACCTTTACAGTTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAACCTAGTAAATCCTAGTTTTGTTTTCTTAACCTTTACAGTTCC  289

seq1  TAAGAGGAACATGGCTTTTGAATAAGGCTTCAGTATGCAACCAAGTGTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAACATGGCTTTTGAATAAGGCTTCAGTATGCAACCAAGTGTAC  339

seq1  ATGGCTATCAAAACCAAGTACTGCACTGAATTCATGATTGTGTCATAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTATCAAAACCAAGTACTGCACTGAATTCATGATTGTGTCATAGGA  389

seq1  ATTGTTATAGTGAACATTACATAGTACACTGTGATCCCACACAGCAGTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATAGTGAACATTACATAGTACACTGTGATCCCACACAGCAGTCC  439

seq1  TAGAGCTGCTTTATGGAGCCCATCTTTGGAAACAGGGATCCTGACACTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGCTTTATGGAGCCCATCTTTGGAAACAGGGATCCTGACACTGA  489

seq1  GCAATGCTCTTCTGCTGAGGAAGATCTGTAGACAACAGTCTGTTATGAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCTCTTCTGCTGAGGAAGATCTGTAGACAACAGTCTGTTATGAGT  539

seq1  CAATGTCTTCTCTGCCATTCTGCCAGTCTAGTTCTAAACAAACTAAATTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTCTCTGCCATTCTGCCAGTCTAGTTCTAAACAAACTAAATTG  589

seq1  AGTTCATGGTCCCTTTGTGTACTTAACAGATTGGATCTGGGACTTGCTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGGTCCCTTTGTGTACTTAACAGATTGGATCTGGGACTTGCTAC  639

seq1  ATAAGTCAAATTGTAGTTTTACATCTAAAGTAAAATGGAATATATGCCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCAAATTGTAGTTTTACATCTAAAGTAAAATGGAATATATGCCTT  689

seq1  TTTTGTATGTCAAATCATCTGTGTATTGCTTATGATACCTCATACAATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGTCAAATCATCTGTGTATTGCTTATGATACCTCATACAATGT  739

seq1  AGATGCTCTGCAAATTATTATACTTGGAACATAATGACAAGAAAAAAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCTGCAAATTATTATACTTGGAACATAATGACAAGAAAAAAAAA  789

seq1  GTAGACAATCCCTTACCTAATACACTTAAGGCCCAAGACCTTTTTCTTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAATCCCTTACCTAATACACTTAAGGCCCAAGACCTTTTTCTTGC  839

seq1  ATTATTTTGTTAACTGAATCAACAGATGTGATTGAGGGCTATGTGAATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTGTTAACTGAATCAACAGATGTGATTGAGGGCTATGTGAATGA  889

seq1  GGGCTCCCTACAGTTACTAAGTTACCACCACAAAACTAAAAGTGACAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCTACAGTTACTAAGTTACCACCACAAAACTAAAAGTGACAACA  939

seq1  TCAGAGATCATCTACTCAGCCTGGCCTTTTAATGACTCCTGGATAGACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATCATCTACTCAGCCTGGCCTTTTAATGACTCCTGGATAGACCA  989

seq1  TGTGGGCACATGCTTGACCACTAACCTTTGACATTCGCTTTCACTATTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCACATGCTTGACCACTAACCTTTGACATTCGCTTTCACTATTAA  1039

seq1  GATGAAACAAAAATTTCTGAGTTCTTGGTCACATGTCCCAAGTTCTAAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACAAAAATTTCTGAGTTCTTGGTCACATGTCCCAAGTTCTAAAC  1089

seq1  TCCCTTAGGTCTTTAGGAATTC  1119
      ||||||||||||||||||||||
seq2  TCCCTTAGGTCTTTAGGAATTC  1111


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