BAC Information

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BAC

Clone NameB6Ng01-264N19
Chromosome12 (Build37)1 (Build37)
Map Location 28,224,117 - 28,224,34156,801,119 - 56,801,616
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700020D12Rik, Sox11
Downstream geneLOC100043009, LOC669327, 1110015M06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264N19.bB6Ng01-264N19.g
ACCGA068660GA068661
length947492
definitionB6Ng01-264N19.b B6Ng01-264N19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,224,117 - 28,224,341)(56,801,119 - 56,801,616)
sequence
gaattcagatatctacctgtctttgtaaatttagctctgtgggaccttgt
cctgagattaccattctaaccatacttagatctaagttctgtcctagggt
gaccttgaactcaggaacctactgctcttgtatctacctatctttttatc
tttctgaccagctggcttataatgcggttgcttctgcttttctgggtcag
taaatgcccttatataattcatattgtatccttatgttttgcatagttga
gaacttatatatttttgaatacctgcatttagagttctttcccatagcct
acggggctgccctgaaggtcacagtgcactactattttgctgagaggaag
acatacctttgcctcccagactctttttttttttttcctggttttttgag
acagggtttctctctgtagccctggctgtcctggaactcactctgtagac
caggctggcctcgaactcagaaatcctgagtgctgggattaaaggtgtgt
gccaccactgccctgtgcctaccagactcttgctgtctctgattttcatg
gaatcattaaccttgccagagaggacattccttgtagtaggaacattaaa
atatgtatagtcatatataaataagccttatgcccacagcagccatcaac
acttatggaggcccacaccctctggctctgtttcaggggtaggaaaccat
gtcatactgtccctgacatggccacgtcggactccaacaaaccaatgaac
tcttccgtaagttgcttctgtcaggacattttatcccagcaatggaaaag
gagctaatgaaggtagaaagcattcccacctttccaaaccagggaaacag
aatacatgcccagaggtcggttgggccatggagtaggagggagataatag
ccaaagcaaagagcctctcgaagattccacatgggatgggaaagcca

catggatttctgcattctcatagactagactctgggttctcatatattca
caattagttttattcccaggattcagtagaatgctctagaaacacatatc
tctacaacaggaaggcaagtggatggttgggaccccatggttacttagat
gttttggacctcaaatgctctagtataatgcttctcttaattatacttta
gaaatggaagaaaaaaatgaatgagtatcttttgatgattgctcatttta
tgaaagtgatgactttaaatggggaaatgagcagaacagccatgattaaa
gttctctggtattgattgggtggagctttgaaagggccacatgatatgtg
cattaagtgtttagaagaataactagaagattaggtagaagagacctgca
gcacccttaaccatacccaagatgagaagacaaagaaagagatagagtgg
gaggggaaaataagtgaaagaaagggaaggggaaggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28224117_28224341
seq2: B6Ng01-264N19.b_304_558 (reverse)

seq1  GGGC-GTGGTGGCACACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCA  49
      |||| ||||||||||||||||||||||||||||||||             
seq2  GGGCAGTGGTGGCACACACCTTTAATCCCAGCACTCA-------------  37

seq1  GGTGGATTTCTGAGTTCGAGCCCAGCCTGGTGTACAAAGTGAGTGCCAGG  99
         ||||||||||||||||| |||||||||| |||| ||||||| |||||
seq2  ---GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGG  84

seq1  ACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAA----AGCAAAAGCA  145
      ||||||||||||| | ||||||||||||||||||||    || ||||  |
seq2  ACAGCCAGGGCTACAGAGAGAAACCCTGTCTCAAAAAACCAGGAAAAAAA  134

seq1  AAAACAGAAAC--AAAAACAAAAACAAAAC-----CAAAACAAAAAACAA  188
      |||| |||  |    |  ||||   |   |     |  | ||||| |  |
seq2  AAAAAAGAGTCTGGGAGGCAAAGGTATGTCTTCCTCTCAGCAAAATAGTA  184

seq1  ----------ACAAACA----------------------AAAAAAAGGT-  205
                ||   ||                      ||| ||   | 
seq2  GTGCACTGTGACCTTCAGGGCAGCCCCGTAGGCTATGGGAAAGAACTCTA  234

seq1  -TTTGAGGTATTCAAAAATAT  225
        |  ||||||||||||||||
seq2  AATGCAGGTATTCAAAAATAT  255


seq1: chr1_56801119_56801616
seq2: B6Ng01-264N19.g_67_564

seq1  GAATTCCATGGATTTCTGCATTCTCATAGACTAGACTCTGGGTTCTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGATTTCTGCATTCTCATAGACTAGACTCTGGGTTCTCATA  50

seq1  TATTCACAATTAGTTTTATTCCCAGGATTCAGTAGAATGCTCTAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACAATTAGTTTTATTCCCAGGATTCAGTAGAATGCTCTAGAAACA  100

seq1  CATATCTCTACAACAGGAAGGCAAGTGGATGGTTGGGACCCCATGGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCTACAACAGGAAGGCAAGTGGATGGTTGGGACCCCATGGTTAC  150

seq1  TTAGATGTTTTGGACCTCAAATGCTCTAGTATAATGCTTCTCTTAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTTTTGGACCTCAAATGCTCTAGTATAATGCTTCTCTTAATTAT  200

seq1  ACTTTAGAAATGGAAGAAAAAAATGAATGAGTATCTTTTGATGATTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGAAATGGAAGAAAAAAATGAATGAGTATCTTTTGATGATTGCTC  250

seq1  ATTTTATGAAAGTGATGACTTTAAATGGGGAAATGAGCAGAACAGCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGAAAGTGATGACTTTAAATGGGGAAATGAGCAGAACAGCCATG  300

seq1  ATTAAAGTTCTCTGGTATTGATTGGGTGGAGCTTTGAAAGGGCCACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTTCTCTGGTATTGATTGGGTGGAGCTTTGAAAGGGCCACATGA  350

seq1  TATGTGCATTAAGTGTTTAGAAGAATAACTAGAAGATTAGGTAGAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCATTAAGTGTTTAGAAGAATAACTAGAAGATTAGGTAGAAGAGA  400

seq1  CCTGCAGCACCCTTAACCATACCCAAGATGAGAAGACAAAGAAAGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCACCCTTAACCATACCCAAGATGAGAAGACAAAGAAAGAGATA  450

seq1  GAGTGGGAGGGGAAAATAAGTGAAAGAAAGGGAAGGGGAAGGGGAGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGAGGGGAAAATAAGTGAAAGAAAGGGAAGGGGAAGGGGAGGG  498


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