BAC Information

Click to search

BAC

Clone NameB6Ng01-265D22
Chromosome1 (Build37)
Map Location 90,563,515 - 90,564,620
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1
Downstream geneArl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688, Centg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265D22.g
ACCGA068945
length1,119
definitionB6Ng01-265D22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggctaacctggtctacaaagtgagttccagatgcacagggat
gcgcaggagagacagagacacacacacacacacacacacacacagacaga
gtcagagagagacagaaacagacagagatatagaggacagagagaaacaa
aaaagaaggaaaaagtagctcacccagttgctggaggaaagagaaaagac
cgttccttgtatccatttgaagaagaaaacaacattaagccaagggggct
ggagagatggtacagtggttcagatgaatcaagttcctctcccagaggac
ctaggtgtgtttcccacttggcagatcacaaccatctgtcacttagacac
atatgcatgcatatatacacgcacacacacacatacacacaaaaattaaa
actacatcttgaaacaaaatactagctcattatcaactcttaaccaaaga
ctgaaaaacagcaatgccattagctcctggggtttgaagactcttggtct
cctgaatgtccaccctctcctatgcacagctggagtaacaacacacacac
atatacacacacacatacatacacacacttcactgcagcattcctgtgga
gatggatggtttatgagagccagaaatgagatagttggggaagggtgttt
aaaacatgtccccagacaagggactgcggtgcatattttacacaccaaaa
cagacctggcctccaggttctcccagcatccctcagtctctatctggcat
accctgcccccaaccctcaactttccagtccaggctgcccttcctctaga
ggctccccctcctcttcctcttcttcttccccacctccccccatgtgcat
gcatatttctctgcctctactcccttcccaactcccctttcccatgccct
aataaaacactattctaatactatacccaacgtattggctgggtacctca
gtgggtaaggatgccttcagcataaacccgctgaagttcctcctttccac
cctcaccatacctgtgctctataaaaacataatcttggcttccccccctc
ctttttttttaataaaacacaaacactttcttgcattcagcagaaaaata
tatctggagtgtgactagg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90563515_90564620
seq2: B6Ng01-265D22.g_66_1184 (reverse)

seq1  CCTAGTCACAACTCAGATATATTTTTCTGCTGGATGCAAGAAAAGTG-TT  49
      ||||||||||   ||||||||||||||||||| ||||||| |||||| ||
seq2  CCTAGTCACACTCCAGATATATTTTTCTGCTGAATGCAAG-AAAGTGTTT  49

seq1  GTGTTTTATAAAAAAAAAAG--GGGGGGGGAGCCAAGA-TATG-TTTTAT  95
      ||||||||| ||||||||||  ||||||| |||||||| |||| ||||||
seq2  GTGTTTTATTAAAAAAAAAGGAGGGGGGGAAGCCAAGATTATGTTTTTAT  99

seq1  AGAGCACA-GTATGGTGA-GGTGG-AAGGA-GAACTTCAGCGGGTTTATG  141
      |||||||| ||||||||| ||||| ||||| |||||||||||||||||||
seq2  AGAGCACAGGTATGGTGAGGGTGGAAAGGAGGAACTTCAGCGGGTTTATG  149

seq1  CTGAA-GCATCCTTTCCCACTGAGGTA-CCAGCC-ATACGTTGGGTATAG  188
      ||||| |||||||| |||||||||||| |||||| |||||||||||||||
seq2  CTGAAGGCATCCTTACCCACTGAGGTACCCAGCCAATACGTTGGGTATAG  199

seq1  TA-TAGAATAGTGTTTATTTAGGGCATGGG-AAGGGGAGTTGGGAAGGGA  236
      || |||||||||||||  |||||||||||| |||||||||||||||||||
seq2  TATTAGAATAGTGTTTTATTAGGGCATGGGAAAGGGGAGTTGGGAAGGGA  249

seq1  GTAGAGGCAGAGAAATATGCATGCACATGGGGGGAGGTGGGGAAGAAGAA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCAGAGAAATATGCATGCACATGGGGGGAGGTGGGGAAGAAGAA  299

seq1  GAGGAAGAGGAGGGGGAGCCTCTAGAGGAAGGGCAGCCTGGACTGGAAAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGGAGGGGGAGCCTCTAGAGGAAGGGCAGCCTGGACTGGAAAG  349

seq1  TTGAGGGTTGGGGGCAGGGTATGCCAGATAGAGACTGAGGGATGCTGGGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTTGGGGGCAGGGTATGCCAGATAGAGACTGAGGGATGCTGGGA  399

seq1  GAACCTGGAGGCCAGGTCTGTTTTGGTGTGTAAAATATGCACCGCAGTCC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGAGGCCAGGTCTGTTTTGGTGTGTAAAATATGCACCGCAGTCC  449

seq1  CTTGTCTGGGGACATGTTTTAAACACCCTTCCCCAACTATCTCATTTCTG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGGGGACATGTTTTAAACACCCTTCCCCAACTATCTCATTTCTG  499

seq1  GCTCTCATAAACCATCCATCTCCACAGGAATGCTGCAGTGAAGTGTGTGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATAAACCATCCATCTCCACAGGAATGCTGCAGTGAAGTGTGTGT  549

seq1  ATGTATGTGTGTGTGTATATGTGTGTGTGTTGTTACTCCAGCTGTGCATA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTGTGTGTATATGTGTGTGTGTTGTTACTCCAGCTGTGCATA  599

seq1  GGAGAGGGTGGACATTCAGGAGACCAAGAGTCTTCAAACCCCAGGAGCTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGTGGACATTCAGGAGACCAAGAGTCTTCAAACCCCAGGAGCTA  649

seq1  ATGGCATTGCTGTTTTTCAGTCTTTGGTTAAGAGTTGATAATGAGCTAGT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTGCTGTTTTTCAGTCTTTGGTTAAGAGTTGATAATGAGCTAGT  699

seq1  ATTTTGTTTCAAGATGTAGTTTTAATTTTTGTGTGTATGTGTGTGTGTGC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTCAAGATGTAGTTTTAATTTTTGTGTGTATGTGTGTGTGTGC  749

seq1  GTGTATATATGCATGCATATGTGTCTAAGTGACAGATGGTTGTGATCTGC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATATGCATGCATATGTGTCTAAGTGACAGATGGTTGTGATCTGC  799

seq1  CAAGTGGGAAACACACCTAGGTCCTCTGGGAGAGGAACTTGATTCATCTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGAAACACACCTAGGTCCTCTGGGAGAGGAACTTGATTCATCTG  849

seq1  AACCACTGTACCATCTCTCCAGCCCCCTTGGCTTAATGTTGTTTTCTTCT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGTACCATCTCTCCAGCCCCCTTGGCTTAATGTTGTTTTCTTCT  899

seq1  TCAAATGGATACAAGGAACGGTCTTTTCTCTTTCCTCCAGCAACTGGGTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGATACAAGGAACGGTCTTTTCTCTTTCCTCCAGCAACTGGGTG  949

seq1  AGCTACTTTTTCCTTCTTTTTTGTTTCTCTCTGTCCTCTATATCTCTGTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTTTTCCTTCTTTTTTGTTTCTCTCTGTCCTCTATATCTCTGTC  999

seq1  TGTTTCTGTCTCTCTCTGACTCTGTCTGTGTGTGTGTGTGTGTGTGTGTG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTCTCTCTCTGACTCTGTCTGTGTGTGTGTGTGTGTGTGTGTG  1049

seq1  TGTCTCTGTCTCTCCTGCGCATCCCTGTGCATCTGGAACTCACTTTGTAG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTCTCTCCTGCGCATCCCTGTGCATCTGGAACTCACTTTGTAG  1099

seq1  ACCAGGTTAGCCTTGAATTC  1106
      ||||||||||||||||||||
seq2  ACCAGGTTAGCCTTGAATTC  1119