BAC Information

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BAC

Clone NameB6Ng01-265F02
Chromosome1 (Build37)
Map Location 138,365,782 - 138,557,808
singlet/doubletdoublet
Overlap geneKif14, Zfp281
Upstream geneNav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59
Downstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265F02.bB6Ng01-265F02.g
ACCGA069000GA069001
length7731,022
definitionB6Ng01-265F02.b B6Ng01-265F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,365,782 - 138,366,586)(138,556,794 - 138,557,808)
sequence
gaattccatgtcattatgtgtctgtaagactctgcttctagaaagccagt
gtctttaaagtcattggcattttctcttggtacggggaattgaacccaag
accccatgtaggtagatataattgagccacatcttcagcccaccagtgtt
taggctttgattgtagttatactggttatttttataatagaatacaaaat
taaaatctatattttatacccatatataggcatacacacacaaacacata
cctcttttagaaaccgagccaggcaggattgtgcacacttttaatcccag
catttgggaggaggaggcaggtggatctttggatttgaagccaggctggt
ttgcgaaacaagttccaagccagccaaagctacagagtgaggcctggacc
taatgtggccaggggcagggggaggtgccctgagtgagtcatttcattct
ctcatgcaatcgcctctcaaatctttgatttgtagtgcttgggaatgtct
tctttcctttcaaagagccacacaagctcatagcttccccagagaatgtt
ctagaatggcattcatcaaccgtatcacctgcatttggtacatagtgctc
ataaatgcagaggcttagcacacttgattttgaaggcatagaatatttct
ttaaaggtgattgcagttggcgagtcacagattattgataagacttttaa
aaagtcagctgggtgtggaggccaggcctttggtcccagagctcacaggc
agatccctaaattcaagggccag
gaattctgaggcttggtttctattgctgtgatgaaacactatgaccaaaa
gaaatctggggagagaagggcttatttggcttaaacttccacattgtagt
ccttcactgaaggaagtgaggacaggaactcaaacagagcagaaacctac
gaaggcaggagctgatgcagaggccatggaggggtgctgcttactggctt
agtccctgtggcgtgctaaactgcattgtaatagaaccaaggaccaccag
cccaggggtggaacaactcacaatgggtgagtcctctacaccaatcatga
gttaagaaaatacttcacaggcttgcctacaggccagtcttatgaaggca
ttctctctatggggttccctcctcatggatgggaggtgtctaccgtgtgt
caggttggcacaacattaccggcacactgagtgagccagcatacactgaa
gatgaactcagaatctaagagctccccggtcaccagcagtgctctgtctg
cttgaggcgtctctccttccaacgagtgcaacggacaacgacttggaatg
ctctggacgtgttggagccaccagtctgtagattgctctttttcccagtt
ggattcctgcttcctctcactttgctacctttagactccatggtggtctg
ttactgtgacacctctgccaattccttaagcagcttcccccgacactccc
tgcccccccccccgtgcccctccccgtttgtttgtttgtttgttttacaa
ctccatctatacagtaactccgcccctggagcagttcagccaccacttct
tccctccctccctccccatcaatcagtgatgactgacacggaggaaaaga
tcatggtcacctactctggttgggccctgacaccaataagggtaccgcat
tgtgtttctctttagctctctgcagtggttgtttcaaagtttcttccccc
actgtcgaatgtcctaccacacccgtctattcctggtgcctagggacatt
agacctccctcttagctacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138365782_138366586
seq2: B6Ng01-265F02.b_47_819

seq1  GAATTCCATGTCATTATGTGTCTGTAAGACTCTGCTTCTAGAAAGCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCATTATGTGTCTGTAAGACTCTGCTTCTAGAAAGCCAGT  50

seq1  GTCTTTAAAGTCATTGGCATTTTCTCTTGGTACGGGGAATTGAACCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAAGTCATTGGCATTTTCTCTTGGTACGGGGAATTGAACCCAAG  100

seq1  ACCCCATGTAGGTAGATATAATTGAGCCACATCTTCAGCCCACCAGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGTAGGTAGATATAATTGAGCCACATCTTCAGCCCACCAGTGTT  150

seq1  TAGGCTTTGATTGTAGTTATACTGGTTATTTTTATAATAGAATACAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTTGATTGTAGTTATACTGGTTATTTTTATAATAGAATACAAAAT  200

seq1  TAAAATCTATATTTTATACCCATATATAGGCATACACACACAAACACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTATATTTTATACCCATATATAGGCATACACACACAAACACATA  250

seq1  CCTCTTTTAGAAACCGAGCCAGGCAGGATTGTGCACACTTTTAATCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTAGAAACCGAGCCAGGCAGGATTGTGCACACTTTTAATCCCAG  300

seq1  CATTTGGGAGGAGGAGGCAGGTGGATCTTTGGATTTGAAGCCAGGCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGAGGAGGAGGCAGGTGGATCTTTGGATTTGAAGCCAGGCTGGT  350

seq1  TTGCGAAACAAGTTCCAAGCCAGCCAAAGCTACAGAGTGAGGCCTGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGAAACAAGTTCCAAGCCAGCCAAAGCTACAGAGTGAGGCCTGGACC  400

seq1  TAATGTGGCCAGGGGCAGGGGGAGGTGCCCTGAGTGAGTCATTTCATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGGCCAGGGGCAGGGGGAGGTGCCCTGAGTGAGTCATTTCATTCT  450

seq1  CTCATGCAATCGCCTCTCAAATCTTTGATTTGTAGTGCTTGGGAATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCAATCGCCTCTCAAATCTTTGATTTGTAGTGCTTGGGAATGTCT  500

seq1  TCTTTCCTTTCAAAGAGCCACACAAGCTCATAGCTTCCCCAGAGAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTTCAAAGAGCCACACAAGCTCATAGCTTCCCCAGAGAATGTT  550

seq1  CTAGAATGGCATTCATCAACCGTATCACCTGCATTTGGTACATAGTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGGCATTCATCAACCGTATCACCTGCATTTGGTACATAGTGCTC  600

seq1  ATAAATGCAGAGGCTTAGCACACTTGATTTTGAAGGCATAGAATATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCAGAGGCTTAGCACACTTGATTTTGAAGGCATAGAATATTTCT  650

seq1  TTAAAGGTGATTGCAGTTGGCGAGTCACAGATTATTGATAAGACTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTGATTGCAGTTGGCGAGTCACAGATTATTGATAAGACTTTTAA  700

seq1  AAAGTCAGCTGGGTGTGGAGGCCAGGCCTTTGGTCCCAGAGCTCACAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGCTGGGTGTGGAGGCCAGGCCTTTGGTCCCAGAGCTCACAGGC  750

seq1  AGATCCCTAAATTCAA-GGCCAGCCTGGTCTACAGAGTTAGTTCCAGGAA  799
      |||||||||||||||| ||||||                           
seq2  AGATCCCTAAATTCAAGGGCCAG---------------------------  773

seq1  AGCCAG  805
            
seq2  ------  773

seq1: chr1_138556794_138557808
seq2: B6Ng01-265F02.g_64_1085 (reverse)

seq1  AAGGTAGCT-AGA-GGAGGTCTAAAG-CCCTGAGCACCAGGAA-AGACGG  46
      ||||||||| ||| |||||||||| | ||||  |||||||||| ||||||
seq2  AAGGTAGCTAAGAGGGAGGTCTAATGTCCCTAGGCACCAGGAATAGACGG  50

seq1  GTGTGTTA-GACATTCGACAGTGGGGG-AGAAACTTTGAAACACCCACTG  94
      ||||| || |||||||||||||||||| ||||||||||||||| ||||||
seq2  GTGTGGTAGGACATTCGACAGTGGGGGAAGAAACTTTGAAACAACCACTG  100

seq1  CAGAGAGCTAAAGAGAAACACAATGCCGTACCCTTATTGGTGTCAGGGCC  144
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGAGAGCTAAAGAGAAACACAATGCGGTACCCTTATTGGTGTCAGGGCC  150

seq1  C-ACCAGAGTAGGTGACCATGATCTTTTCCTCCGTGTCAGTCATCACTGA  193
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAGTAGGTGACCATGATCTTTTCCTCCGTGTCAGTCATCACTGA  200

seq1  TTGATGGGGAGGGAGGGAGGGAAGAAGTGGTGGCTGAACTGCTCCAGGGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGGGAGGGAGGGAGGGAAGAAGTGGTGGCTGAACTGCTCCAGGGG  250

seq1  CGGAGTTACTGTATAGATGGAGTTGTAAAACAAACAAACAAACAAACGGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTTACTGTATAGATGGAGTTGTAAAACAAACAAACAAACAAACGGG  300

seq1  GAGGGGCACGGGGGGGGGGGCAGGGAGTGTCGGGGGAAGCTGCTTAAGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCACGGGGGGGGGGGCAGGGAGTGTCGGGGGAAGCTGCTTAAGGA  350

seq1  ATTGGCAGAGGTGTCACAGTAACAGACCACCATGGAGTCTAAAGGTAGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAGAGGTGTCACAGTAACAGACCACCATGGAGTCTAAAGGTAGCA  400

seq1  AAGTGAGAGGAAGCAGGAATCCAACTGGGAAAAAGAGCAATCTACAGACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAGGAAGCAGGAATCCAACTGGGAAAAAGAGCAATCTACAGACT  450

seq1  GGTGGCTCCAACACGTCCAGAGCATTCCAAGTCGTTGTCCGTTGCACTCG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCCAACACGTCCAGAGCATTCCAAGTCGTTGTCCGTTGCACTCG  500

seq1  TTGGAAGGAGAGACGCCTCAAGCAGACAGAGCACTGCTGGTGACCGGGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGAGAGACGCCTCAAGCAGACAGAGCACTGCTGGTGACCGGGGA  550

seq1  GCTCTTAGATTCTGAGTTCATCTTCAGTGTATGCTGGCTCACTCAGTGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGATTCTGAGTTCATCTTCAGTGTATGCTGGCTCACTCAGTGTG  600

seq1  CCGGTAATGTTGTGCCAACCTGACACACGGTAGACACCTCCCATCCATGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTAATGTTGTGCCAACCTGACACACGGTAGACACCTCCCATCCATGA  650

seq1  GGAGGGAACCCCATAGAGAGAATGCCTTCATAAGACTGGCCTGTAGGCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAACCCCATAGAGAGAATGCCTTCATAAGACTGGCCTGTAGGCAA  700

seq1  GCCTGTGAAGTATTTTCTTAACTCATGATTGGTGTAGAGGACTCACCCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAAGTATTTTCTTAACTCATGATTGGTGTAGAGGACTCACCCAT  750

seq1  TGTGAGTTGTTCCACCCCTGGGCTGGTGGTCCTTGGTTCTATTACAATGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTGTTCCACCCCTGGGCTGGTGGTCCTTGGTTCTATTACAATGC  800

seq1  AGTTTAGCACGCCACAGGGACTAAGCCAGTAAGCAGCACCCCTCCATGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGCACGCCACAGGGACTAAGCCAGTAAGCAGCACCCCTCCATGGC  850

seq1  CTCTGCATCAGCTCCTGCCTTCGTAGGTTTCTGCTCTGTTTGAGTTCCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATCAGCTCCTGCCTTCGTAGGTTTCTGCTCTGTTTGAGTTCCTG  900

seq1  TCCTCACTTCCTTCAGTGAAGGACTACAATGTGGAAGTTTAAGCCAAATA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTTCCTTCAGTGAAGGACTACAATGTGGAAGTTTAAGCCAAATA  950

seq1  AGCCCTTCTCTCCCCAGATTTCTTTTGGTCATAGTGTTTCATCACAGCAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCTCTCCCCAGATTTCTTTTGGTCATAGTGTTTCATCACAGCAA  1000

seq1  TAGAAACCAAGCCTCAGAATTC  1015
      ||||||||||||||||||||||
seq2  TAGAAACCAAGCCTCAGAATTC  1022