BAC Information

Click to search

BAC

Clone NameB6Ng01-265I22
Chromosome1 (Build37)
Map Location 162,526,872 - 162,527,921
singlet/doubletsinglet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265I22.bB6Ng01-265I22.g
ACCGA069175GA069176
length1,0781,026
definitionB6Ng01-265I22.b B6Ng01-265I22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgtgttctttcatactaacaatggatttcatgatgatcactg
cactgcacattcctaacattactcagcacctctctaatgtttttgtgttc
tatacaggaaacaaaaagccatctgccacctagcattggctttactataa
ttacttgagggtatacacagcttaaatggcctacatttatgttttaaatg
tatatggtagaggctggtagagacatcagctggtgatatgagagcatgtg
aaccttagattttcaaagcctgtgtgagaagccaagcgtggtgtgttcct
gtaatccccagtgctggggaggccaacgggcagatcactcaggcttgctg
gcctggaatctagctagttggcaagctgcagggtcagagggagaccatgt
cgcaaaaaataaaattaatagaataatcaaggaagagatccagtgttgat
ttctggacttttgtctgcctcacacacaaaaatacaaatgaacatgttat
atatataaacacaaaaaaaataacaaaagtatccaaaaaatacattttgt
catgttgtcaaaaacaatttaatgaacagaaaatacagtacaaaatttaa
ttcatggaataaagaaagcttaaattttactaatttaatttatatataga
caatgaactactagtaaatctctcagagcctccaattatgacaaagacta
tattctcaggtggtggtttgccctccacagctcatatatttgaatgctta
gtcatcagagagcagcactatatgaaaaaggattaggacccatggccttg
tttagataacgtatgcccactaggagtaagctttgagggttcaaaagcct
attccagtctcagccttttcccatccccaatcccaaacccatgactcagc
tactgccccagtgccacacctaaatgctgccacctttcctggccatgatg
ataatggaaaggaacctctgaattgtaagcaagcccccgatttaattgtt
tatttttttcatagaagttgccatgggtcatgtgttcttcttttacagcc
aataagaacagtgaacttgaagaacatt
gaattcctcagagttcaactgtctctgtgatcctgtgactctggaatctg
tgatcctgagatcctgggtgtgtcagagctcctgggagtcaagctgccgt
tgggactctgagatcctggtgtgaccaagctcctgggatcctgggactct
gtggtcctgggcatgttagagtgcctgggagtggagctgcctcagggtgt
tgtggaactggctgtggagttcacgctgaagatctgctccaggcaatggc
ccagaccagaaggaacctgtgccactggtcaagtggatttcctgggtgcc
tgggtcctactggtcccagttactcctggtgttggggtagatattgtgcc
ctcttcatctctcatcctatgatcctggctgtgttagagtgctttggagt
ggctcttcctctgggtgttgtgggtctggctatgtagtttgtgcccaggt
ctgctcagggctatatagcttcctatagctgtcctagaacttgctttata
gactgagctgtcttgccttctgaatgctgggattaaaggcattcaccact
aagccaggaagattttgttttcaaacttttttttttttttaattatttta
gatcagtaatgtttggttttaccttaggtctctgggctatctagtctctg
gctcttggttactcaagcagtgtcaggtatgagtttcttcttgtggagtg
gccttaagtcagacattggttgggtacactttacaagttctgtgccccta
ctgccctagcatatttggttggcaggaccaagtgtaggtcaaagggtttg
tggctggattcttgtctacattttctctcagtagtcctgcagagtacctt
ccttcactaagagagtagaacattaggggtaaaggctccgtgtaggcact
acctgttcagatgagttcgtgggtgttgttcttggcattggacccttgat
agcagttaaagagagcaatccgtatacttggcaacatcctgggtatgatt
aggggatttctcattgagaacccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162526872_162527921
seq2: B6Ng01-265I22.b_49_1112

seq1  GAATTCATTGTGTTCTTTCATACTAACAATGGATTTCATGATGATCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGTTCTTTCATACTAACAATGGATTTCATGATGATCACTG  50

seq1  CACTGCACATTCCTAACATTACTCAGCACCTCTCTAATGTTTTTGTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACATTCCTAACATTACTCAGCACCTCTCTAATGTTTTTGTGTTC  100

seq1  TATACAGGAAACAAAAAGCCATCTGCCACCTAGCATTGGCTTTACTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGGAAACAAAAAGCCATCTGCCACCTAGCATTGGCTTTACTATAA  150

seq1  TTACTTGAGGGTATACACAGCTTAAATGGCCTACATTTATGTTTTAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAGGGTATACACAGCTTAAATGGCCTACATTTATGTTTTAAATG  200

seq1  TATATGGTAGAGGCTGGTAGAGACATCAGCTGGTGATATGAGAGCATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTAGAGGCTGGTAGAGACATCAGCTGGTGATATGAGAGCATGTG  250

seq1  AACCTTAGATTTTCAAAGCCTGTGTGAGAAGCCAAGCGTGGTGTGTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAGATTTTCAAAGCCTGTGTGAGAAGCCAAGCGTGGTGTGTTCCT  300

seq1  GTAATCCCCAGTGCTGGGGAGGCCAACGGGCAGATCACTCAGGCTTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCCAGTGCTGGGGAGGCCAACGGGCAGATCACTCAGGCTTGCTG  350

seq1  GCCTGGAATCTAGCTAGTTGGCAAGCTGCAGGGTCAGAGGGAGACCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAATCTAGCTAGTTGGCAAGCTGCAGGGTCAGAGGGAGACCATGT  400

seq1  CGCAAAAAATAAAATTAATAGAATAATCAAGGAAGAGATCCAGTGTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAAAATAAAATTAATAGAATAATCAAGGAAGAGATCCAGTGTTGAT  450

seq1  TTCTGGACTTTTGTCTGCCTCACACACAAAAATACAAATGAACATGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGACTTTTGTCTGCCTCACACACAAAAATACAAATGAACATGTTAT  500

seq1  ATATATAAACACAAAAAAAATAACAAAAGTATCCAAAAAATACATTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAACACAAAAAAAATAACAAAAGTATCCAAAAAATACATTTTGT  550

seq1  CATGTTGTCAAAAACAATTTAATGAACAGAAAATACAGTACAAAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTCAAAAACAATTTAATGAACAGAAAATACAGTACAAAATTTAA  600

seq1  TTCATGGAATAAAGAAAGCTTAAATTTTACTAATTTAATTTATATATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGAATAAAGAAAGCTTAAATTTTACTAATTTAATTTATATATAGA  650

seq1  CAATGAACTACTAGT-AATCTCTCAGAGCCTCCAATTATGACAAAGACTA  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAATGAACTACTAGTAAATCTCTCAGAGCCTCCAATTATGACAAAGACTA  700

seq1  TATTCTCAGGTGGTGGTTTGCCCTCCACAGCTCATATATTTGAATGCTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCAGGTGGTGGTTTGCCCTCCACAGCTCATATATTTGAATGCTTA  750

seq1  GTCATCAGAGAGCAGCACTATATG-AAAAGGATTAGGACCCATGGCCTTG  798
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCATCAGAGAGCAGCACTATATGAAAAAGGATTAGGACCCATGGCCTTG  800

seq1  -TTAGATAACGTATG-CCACTAGGAGTAAGCTTTGAGGGTTCAAAAGCCT  846
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTAGATAACGTATGCCCACTAGGAGTAAGCTTTGAGGGTTCAAAAGCCT  850

seq1  ATTCCAGTCTCAGCC-TTTCCCATCCCCAATCCC-AACCCATGACTCAGC  894
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  ATTCCAGTCTCAGCCTTTTCCCATCCCCAATCCCAAACCCATGACTCAGC  900

seq1  TACTGCCCCAGTGCCACACCTAAATGCTGCCACC-TTCCTGGCCATGATG  943
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACTGCCCCAGTGCCACACCTAAATGCTGCCACCTTTCCTGGCCATGATG  950

seq1  ATAATGG-AAGGAACCTCTGAAATTGTAAGCAAGCCCCC-AATTAAATGT  991
      ||||||| |||||||||||| |||||||||||||||||| | |||| |||
seq2  ATAATGGAAAGGAACCTCTG-AATTGTAAGCAAGCCCCCGATTTAATTGT  999

seq1  TTA-TTTTTTCATAAGAGTTGCCAT-GGTCATGGTGTCT--CTTTACAG-  1036
      ||| ||||||||||  ||||||||| |||||||   |||   ||||||| 
seq2  TTATTTTTTTCATAGAAGTTGCCATGGGTCATGTGTTCTTCTTTTACAGC  1049

seq1  CAAT-AGAACAGTGA  1050
      |||| ||||||||||
seq2  CAATAAGAACAGTGA  1064