BAC Information

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BAC

Clone NameB6Ng01-265M08
Chromosome1 (Build37)
Map Location 196,760,903 - 196,848,519
singlet/doubletdoublet
Overlap geneCd34
Upstream geneEG623172, Plxna2
Downstream geneCd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265M08.bB6Ng01-265M08.g
ACCGA069335GA069336
length1,185338
definitionB6Ng01-265M08.b B6Ng01-265M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,760,903 - 196,762,097)(196,848,182 - 196,848,519)
sequence
gaattctattatcaaaatacttattatgattgtgtttacaatacccttgc
aacattcacaagttagtagtgctaacttagcaggacgatctctgcaaaca
ttaagagaccaaagaaaggaactgagtgaatgccttgcaccacaacctgg
tacattcaaggaatggccctgaagaaacataaattagaatcccttaaggg
aaaaccactaactttagcaaagactcaaacaatgattaggcatatctagt
tcatggaagtagacagattcagttctgcctgaattaatctatataataat
tttagtcataattcaaaggagtggagcaaactgtggtggtgaagctcatg
gtcctggcactgagaaggcagaggcaggaaaacctcaaatttgaaggctg
cttaggcaacattttaaaaccctgcctcaaagacaaacaaacaaaaataa
caaagagagggaaaaagagaggggaggaaaatataaaaatctaagaggac
agtttgggagaggatcagataatctattatcaaatatttattatgcactg
aataataattatccaaagatatttagggaaattctgaagaaaataaagga
ggtgacttgtctgaaaaaaaataggacttactgaaaatgaaattaactaa
gaggataattcagacagtgtgagacatgtgtattttaaagggcagatgaa
ccagcatatgaatatagaagataactaaaaagtcatgtcaggccaggaaa
gaggagattacacagaaaaacaaaagattgggacagggtactctgtatga
ataatatttgagcacagatagaatgggttgcctgtcattgagacaaccac
aacatcaagataattccccccagaagacactgagcctgagaatgagcagg
ccaaatgttccagaatttactgtcagtacgtgctagtcagattatagcta
aaggaggccctggagggcaggaagagcaaaaaaggaactcactttttaga
gtgtagaattctcacagctcccctcagtactggcatcacacattaaagat
ctttcttttcatactcgacagtcctggagtgccttcaacaatttaaagaa
tattttgcaccatgggttaggtactggggagccttttagtcaagatgaac
tgaaaatagaatgaaaaatgctaccagtaatgtcc
tttaaaacaaaaaagaaaaagaaggaggtggggggtgggggagagaagaa
gagaaaataaaagggcactgttttctaagctcactaaataatataaccag
ccttcttgtctctaaattcaaaatccaagggtctcagggctcttgtgagg
tgcctcatgtctccccatctctgaagcccagcattgggcttctcactatc
ccgccttcagtaaaaatgactgaagtcagacaatcagcccacagcaccaa
tgagctgtttttattgctttcatgttgtcataatattctggctgttcagt
tgagagctccatcttctgactccagatacacttagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196760903_196762097
seq2: B6Ng01-265M08.b_48_1232

seq1  GAATTCTATTATCAAAATACTTATTATGATTGTGTTTACAATACCCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTATCAAAATACTTATTATGATTGTGTTTACAATACCCTTGC  50

seq1  AACATTCACAAGTTAGTAGTGCTAACTTAGCAGGACGATCTCTGCAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCACAAGTTAGTAGTGCTAACTTAGCAGGACGATCTCTGCAAACA  100

seq1  TTAAGAGACCAAAGAAAGGAACTGAGTGAATGCCTTGCACCACAACCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGACCAAAGAAAGGAACTGAGTGAATGCCTTGCACCACAACCTGG  150

seq1  TACATTCAAGGAATGGCCCTGAAGAAACATAAATTAGAATCCCTTAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAAGGAATGGCCCTGAAGAAACATAAATTAGAATCCCTTAAGGG  200

seq1  AAAACCACTAACTTTAGCAAAGACTCAAACAATGATTAGGCATATCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACTAACTTTAGCAAAGACTCAAACAATGATTAGGCATATCTAGT  250

seq1  TCATGGAAGTAGACAGATTCAGTTCTGCCTGAATTAATCTATATAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAGTAGACAGATTCAGTTCTGCCTGAATTAATCTATATAATAAT  300

seq1  TTTAGTCATAATTCAAAGGAGTGGAGCAAACTGTGGTGGTGAAGCTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCATAATTCAAAGGAGTGGAGCAAACTGTGGTGGTGAAGCTCATG  350

seq1  GTCCTGGCACTGAGAAGGCAGAGGCAGGAAAACCTCAAATTTGAAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCACTGAGAAGGCAGAGGCAGGAAAACCTCAAATTTGAAGGCTG  400

seq1  CTTAGGCAACATTTTAAAACCCTGCCTCAAAGACAAACAAACAAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCAACATTTTAAAACCCTGCCTCAAAGACAAACAAACAAAAATAA  450

seq1  CAAAGAGAGGGAAAAAGAGAGGGGAGGAAAATATAAAAATCTAAGAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAGGGAAAAAGAGAGGGGAGGAAAATATAAAAATCTAAGAGGAC  500

seq1  AGTTTGGGAGAGGATCAGATAATCTATTATCAAATATTTATTATGCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGAGAGGATCAGATAATCTATTATCAAATATTTATTATGCACTG  550

seq1  AATAATAATTATCCAAAGATATTTAGGGAAATTCTGAAGAAAATAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATTATCCAAAGATATTTAGGGAAATTCTGAAGAAAATAAAGGA  600

seq1  GGTGACTTGTCTGAAAAAAAATAGGACTTACTGAAAATGAAATTAACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTGTCTGAAAAAAAATAGGACTTACTGAAAATGAAATTAACTAA  650

seq1  GAGGATAATTCAGACAGTGTGAGACATGTGTATTTTAAAGGGCAGATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAATTCAGACAGTGTGAGACATGTGTATTTTAAAGGGCAGATGAA  700

seq1  CCAGCATATGAATATAGAAGATAACTAAAAAGTCATGTCAGGCCAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATATGAATATAGAAGATAACTAAAAAGTCATGTCAGGCCAGGAAA  750

seq1  GAGGAGATTACACAGAAAAACAAAAGATTGGGACAGGGTACTCTGTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATTACACAGAAAAACAAAAGATTGGGACAGGGTACTCTGTATGA  800

seq1  ATAATATTTGAGCACAGATAGAATGGGTTGCCTGTCATTGAGACAACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTGAGCACAGATAGAATGGGTTGCCTGTCATTGAGACAACCAC  850

seq1  AACATCAAGATAATTCCCCCCAGAAGACACTGAGCCTGAGAATGAGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAAGATAATTCCCCCCAGAAGACACTGAGCCTGAGAATGAGCAGG  900

seq1  CCAAATGTTCCAGAATTTACTGTCAGTACGTGCTAGTCAGATTATAGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTCCAGAATTTACTGTCAGTACGTGCTAGTCAGATTATAGCTA  950

seq1  AAGGAGGCCCTGGAGGGCAGGAAGAGCAAAAAAGGAACTCAC-TTTTAGA  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGGAGGCCCTGGAGGGCAGGAAGAGCAAAAAAGGAACTCACTTTTTAGA  1000

seq1  GTGTAG-ATTCTCACAGCTCCCCTCCAGTACCTGGCATCACCACCATTAA  1048
      |||||| ||||||||||||||||| ||||| ||||||||||   ||||||
seq2  GTGTAGAATTCTCACAGCTCCCCT-CAGTA-CTGGCATCAC--ACATTAA  1046

seq1  AGATCTTTCTTTTCATACTCGGACAGTCCCTGAGTGCTTTCAACAAATTT  1098
      |||||||||||||||||||| ||||||||  |||||| ||||||||  ||
seq2  AGATCTTTCTTTTCATACTC-GACAGTCCTGGAGTGCCTTCAACAA--TT  1093

seq1  AAAAGAATATTTTGCAACATGGGT--AGTAGTGGGGGAGC--TTTAGTTC  1144
       ||||||||||||||| |||||||   ||| | |||||||  ||||||  
seq2  TAAAGAATATTTTGCACCATGGGTTAGGTACT-GGGGAGCCTTTTAGT--  1140

seq1  CAAAGTATGAAACTGAAAAAATAGAAATGAAAAAATGCT-TCATTAATGT  1193
      |||   ||| |||||  ||||||| |||| |||||||||  || ||||||
seq2  CAA--GATG-AACTG--AAAATAG-AATG-AAAAATGCTACCAGTAATGT  1183

seq1  CC  1195
      ||
seq2  CC  1185

seq1: chr1_196848182_196848519
seq2: B6Ng01-265M08.g_72_409 (reverse)

seq1  TGACTCAGTGTATCTGGAGTCAGAAGATGGAGCTCTCAGCTGAACAGCCA  50
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TGACTAAGTGTATCTGGAGTCAGAAGATGGAGCTCTCAACTGAACAGCCA  50

seq1  GAATATTCTGACAACATGAAAGCAATAAAAACAGCTCATTGGTGCTCTGG  100
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  GAATATTATGACAACATGAAAGCAATAAAAACAGCTCATTGGTGCTGTGG  100

seq1  GCTGATTCTCTGACTTCAGTCATTTTTACTGAAGGCGGGATAGTGAGAAG  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTGTCTGACTTCAGTCATTTTTACTGAAGGCGGGATAGTGAGAAG  150

seq1  GCCACTGCTGGGCTTCAGAGATGGGGAGACATGAGGCACCTCACAAGAGC  200
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCTGGGCTTCAGAGATGGGGAGACATGAGGCACCTCACAAGAGC  200

seq1  CCTGAGACCCTTGGATTTTGAATTTAGAGACAAGAAGGCTGGTTATATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGACCCTTGGATTTTGAATTTAGAGACAAGAAGGCTGGTTATATTA  250

seq1  TTTAGTGAGCTTAGAAAACAGTGCCCTTTTCTTTTCTCTTCTTCTCTCCC  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTAGTGAGCTTAGAAAACAGTGCCCTTTTATTTTCTCTTCTTCTCTCCC  300

seq1  CCACCCCCCACCTCCTTCTTTTTCTTTTTTGTTTTAAA  338
      ||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCACCTCCTTCTTTTTCTTTTTTGTTTTAAA  338