BAC Information

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BAC

Clone NameB6Ng01-266C18
Chromosome1 (Build37)
Map Location 100,422,315 - 100,423,427
singlet/doubletsinglet
Overlap genenone
Upstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868
Downstream geneEG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266C18.bB6Ng01-266C18.g
ACCGA069635GA069636
length1,1881,104
definitionB6Ng01-266C18.b B6Ng01-266C18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccatcttttaaggaggttatttgatt
ttctgcagtccaccctcttgagttctttatatatattgggtattagtccc
ctatctgatttaagatatgtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttaaagcacaagccattgctgtt
ctattcaggaatttttaccatgtgcccatatatttgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagagaggaatgggtcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattttattccattgg
tctacttttctgtcagtataccagtaacatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccactagaggtacttt
tatccttgagaagagcttttggtatcctaggttttttgttattccatatg
aatttgcagattgctctttttaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
taacaatgttgatcctgccaatccatgagcatgggagatctttccatctc
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttagttagagtcacaccaaggatgttttatatta
tttgtgactattgagaaggatgttgtttccctgattctttctcagcctaa
tattctttgtgttagagaagggcattactgtttgtgttaatttatatcag
ctactacgaagctgtttatcaggttaggagttctctgggtgaaattttaa
ggtcactttaatactatcttatccatttgcaaaaggtaattttggactca
attttccgattggcatcactgatttcctttttcttgga

gaattcagtatgtggggatgcttggggggagaaaaggtatccactagatt
ctaaacttgccagttgcggtggttgtttaggagggtcacttaccataacc
ctgaatacagtagaactcctgggaggacttcagattgtggtgtctccaga
ggagcaggcaagctggtgatctgtcccagtggaaggccatagagaaactt
ttataacataggcactgtaccttactgattattggatatgcaaggcttgt
atctggcacacgctgggtactaaattaaattcggaggaatgaatgagcag
ttgaataaaggatctgcggtcaaagaactacaaatcattttgttccacat
tcattttgatattattctactcaacttccctatccagtgggaagacacca
aagagagaggagaacttaaattgaagaaatgtttatttttgtctcctaat
ttcaaagggttcaatccacactcagctgactccattgtgtataggcctgg
tgtaagagaaaacatcattcaggtctaatgtaagagcccagtgtagctta
catcagggtatgatggtgatgtcagtcatcatgaaggcactgtttgccaa
agttcctgtgcttggacaacctgaactgacccttccctgcccttagtgaa
tatttgcttcacaccttttgatatacttatgtttcttactgttaaagtcc
tctctccaaagaaatacagagaaaggaaaggaagaattaagtatgagtta
gagattgaactttttagagttagttagagaatacattatgagctattatt
tttatgccacactgaaacaaaatcaaattcaaatagagtaatcctgtgta
gcatttctgtaaccacaaggctttactatgtcaatcctaaggaagaagat
aatgagtttaaagaaaattgatttttatgtaatgttagtttttagttctt
atgagattgctgttttcttgctttgttcttctttcaatattctacgcaat
caggaagttttagaagaaaatatatttttgaaagctgtgtagtcataata
acctttcctgagaatgattttaagtataaataagctgaagaaacaaaagt
tgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100422315_100423427
seq2: B6Ng01-266C18.g_66_1169 (reverse)

seq1  GACAACTTTTGTTTCTTTCAGGCTTTATTTATACTTAAAATCATTTCCTC  50
      ||||||||||||||| |||||   |||||||||||||||||||||  |||
seq2  GACAACTTTTGTTTC-TTCAG--CTTATTTATACTTAAAATCATT--CTC  45

seq1  A-GAAAGTTTATTTATTGACTACACAGCTTTTCAAAATATATTTTCTTCT  99
      | ||||| |||||   |||||||||||||||  |||||||||||||||||
seq2  AGGAAAGGTTATT--ATGACTACACAGCTTTCAAAAATATATTTTCTTCT  93

seq1  AAAACCTTCCTTGATTGCGTAAGAATATTGAAAGAAGAACAAAGCAAGAA  149
      |||| ||||| ||||||||| |||||||||||||||||||||||||||||
seq2  AAAA-CTTCC-TGATTGCGT-AGAATATTGAAAGAAGAACAAAGCAAGAA  140

seq1  AACAGCAATCTCATAAGAACTAAAAACTAACATTACAATAAAATCAATTT  199
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  AACAGCAATCTCATAAGAACTAAAAACTAACATTACATAAAAATCAATTT  190

seq1  TCTTTAAACTCATTATCTTCTTCCTTAGGATTGACATAGTAAAGCCTTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAACTCATTATCTTCTTCCTTAGGATTGACATAGTAAAGCCTTGT  240

seq1  GGTTACAGAAATGCTACACAGGATTACTCTATTTGAATTTGATTTTGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGAAATGCTACACAGGATTACTCTATTTGAATTTGATTTTGTTT  290

seq1  CAGTGTGGCATAAAAATAATAGCTCATAATGTATTCTCTAACTAACTCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGCATAAAAATAATAGCTCATAATGTATTCTCTAACTAACTCTA  340

seq1  AAAAGTTCAATCTCTAACTCATACTTAATTCTTCCTTTCCTTTCTCTGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCAATCTCTAACTCATACTTAATTCTTCCTTTCCTTTCTCTGTA  390

seq1  TTTCTTTGGAGAGAGGACTTTAACAGTAAGAAACATAAGTATATCAAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGAGAGAGGACTTTAACAGTAAGAAACATAAGTATATCAAAAG  440

seq1  GTGTGAAGCAAATATTCACTAAGGGCAGGGAAGGGTCAGTTCAGGTTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGCAAATATTCACTAAGGGCAGGGAAGGGTCAGTTCAGGTTGTC  490

seq1  CAAGCACAGGAACTTTGGCAAACAGTGCCTTCATGATGACTGACATCACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACAGGAACTTTGGCAAACAGTGCCTTCATGATGACTGACATCACC  540

seq1  ATCATACCCTGATGTAAGCTACACTGGGCTCTTACATTAGACCTGAATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACCCTGATGTAAGCTACACTGGGCTCTTACATTAGACCTGAATGA  590

seq1  TGTTTTCTCTTACACCAGGCCTATACACAATGGAGTCAGCTGAGTGTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTTACACCAGGCCTATACACAATGGAGTCAGCTGAGTGTGGA  640

seq1  TTGAACCCTTTGAAATTAGGAGACAAAAATAAACATTTCTTCAATTTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCCTTTGAAATTAGGAGACAAAAATAAACATTTCTTCAATTTAAG  690

seq1  TTCTCCTCTCTCTTTGGTGTCTTCCCACTGGATAGGGAAGTTGAGTAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTCTCTTTGGTGTCTTCCCACTGGATAGGGAAGTTGAGTAGAA  740

seq1  TAATATCAAAATGAATGTGGAACAAAATGATTTGTAGTTCTTTGACCGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCAAAATGAATGTGGAACAAAATGATTTGTAGTTCTTTGACCGCA  790

seq1  GATCCTTTATTCAACTGCTCATTCATTCCTCCGAATTTAATTTAGTACCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTATTCAACTGCTCATTCATTCCTCCGAATTTAATTTAGTACCC  840

seq1  AGCGTGTGCCAGATACAAGCCTTGCATATCCAATAATCAGTAAGGTACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGTGCCAGATACAAGCCTTGCATATCCAATAATCAGTAAGGTACAG  890

seq1  TGCCTATGTTATAAAAGTTTCTCTATGGCCTTCCACTGGGACAGATCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATGTTATAAAAGTTTCTCTATGGCCTTCCACTGGGACAGATCACC  940

seq1  AGCTTGCCTGCTCCTCTGGAGACACCACAATCTGAAGTCCTCCCAGGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCCTGCTCCTCTGGAGACACCACAATCTGAAGTCCTCCCAGGAGT  990

seq1  TCTACTGTATTCAGGGTTATGGTAAGTGACCCTCCTAAACAACCACCGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGTATTCAGGGTTATGGTAAGTGACCCTCCTAAACAACCACCGCA  1040

seq1  ACTGGCAAGTTTAGAATCTAGTGGATACCTTTTCTCCCCCCAAGCATCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAAGTTTAGAATCTAGTGGATACCTTTTCTCCCCCCAAGCATCCC  1090

seq1  CACATACTGAATTC  1113
      ||||||||||||||
seq2  CACATACTGAATTC  1104


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