BAC Information

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BAC

Clone NameB6Ng01-266I17
Chromosome1 (Build37)
Map Location 53,966,430 - 53,967,628
singlet/doubletsinglet
Overlap geneHecw2
Upstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266I17.bB6Ng01-266I17.g
ACCGA069915GA069916
length1,2331,171
definitionB6Ng01-266I17.b B6Ng01-266I17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcctgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctttctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cacatctttcacttccttagttagagtcatgccgagatattttatattat
ttgtgactattgagaaaggtgttgttccctaatttctttctcagcctgtt
tattctttgtgtagaagaaaggccattgacttgttgagtaattataatcc
agctacttcaccgaagctgtttatcagtttaaggagttcttctgggtgga
attttaggtgttcacttatatatactatccattcattctgcaaaggtaat
tttggacttcctcattccattgatccttgatccccatttggtggcgaatg
gtcctgggctacatacactccaaggcatctcta
gaattcaatcgaaaactaagaaaataaaaagtaaattaaaaattcaggaa
agtttactttataatatttgctgcttattctccaaataagaaaaacaaaa
taactgtatctgtaaaaagattatgcctatacatccatacctaagacctt
aacgaaaattctagaaactttaacgtgtaccaaatacaagtcagaaaata
agacttcctaacccacagaatttaaattttatagacatgcatctttttaa
ccagtaatgaacacagtttgggtagaaggaaggaaaagataaagtaaaag
ctaagcttttagagaggagtattttaactagagatgcgctctccagagaa
aggagttttaaaatcacacccgagtgtggaacagagaaagctagcacctc
atgaaaagagagtgtgcaagaaagcctgagttgagctgctgtatgccagt
gtccagggcttgcaggcctcagcttcttccaggcatgcaaggctatgttt
acttaattacctgaaggaccacacagactcctgggactcactgcagccct
gttagaccagagcctgcaagtaacccacaatctgcatttatctgaaaaac
aaaaacaaaaacaaacaaacaaacacctgcccagttaaaaaccacagctt
tgaaccacagctcagcaactggttaatgatactgcagagacaggagcttg
tagctgacaaccaaggcacagaagtcagaagcctactgagtgatgccact
agtagtctgaactcactgtgggttggaaagaattcacactgcaggaagtg
gcaaatgaaaaccagggcttgattccttgttctgtgacctgtccagacta
tgggccaactgtctgactacaaacaaggtattgcaaaagccctcccggca
cacagatctacatactgggccttgtcttacaatgttattcactgcccctt
tacagagaaagttttgtagccaaagaactgataaagatgacaggctagca
aacctcacatcaaatgagctgtgcatcagaacagctcacaagatacaagt
gagaaatgtatttcctgccactaagcattgactcagttgcaggagtctga
gtcactctctgtttactgcgttcactagcactctgtccattactgtacat
ttaaataagggtggccaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53966430_53967628
seq2: B6Ng01-266I17.g_67_1237

seq1  GAATTCAATCGAAAACTAAGAAAATAAAAAGTAAATTAAAAATTCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCGAAAACTAAGAAAATAAAAAGTAAATTAAAAATTCAGGAA  50

seq1  AGTTTACTTTATAATATTTGCTGCTTATTCTCCAAATAAGAAAAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTTTATAATATTTGCTGCTTATTCTCCAAATAAGAAAAACAAAA  100

seq1  TAACTGTATCTGTAAAAAGATTATGCCTATACATCCATACCTAAGACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTATCTGTAAAAAGATTATGCCTATACATCCATACCTAAGACCTT  150

seq1  AACGAAAATTCTAGAAACTTTAACGTGTACCAAATACAAGTCAGAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAAATTCTAGAAACTTTAACGTGTACCAAATACAAGTCAGAAAATA  200

seq1  AGACTTCCTAACCCACAGAATTTAAATTTTATAGACATGCATCTTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCTAACCCACAGAATTTAAATTTTATAGACATGCATCTTTTTAA  250

seq1  CCAGTAATGAACACAGTTTGGGTAGAAGGAAGGAAAAGATAAAGTAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATGAACACAGTTTGGGTAGAAGGAAGGAAAAGATAAAGTAAAAG  300

seq1  CTAAGCTTTTAGAGAGGAGTATTTTAACTAGAGATGCGCTCTCCAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTTTAGAGAGGAGTATTTTAACTAGAGATGCGCTCTCCAGAGAA  350

seq1  AGGAGTTTTAAAATCACACCCGAGTGTGGAACAGAGAAAGCTAGCACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTTAAAATCACACCCGAGTGTGGAACAGAGAAAGCTAGCACCTC  400

seq1  ATGAAAAGAGAGTGTGCAAGAAAGCCTGAGTTGAGCTGCTGTATGCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGAGAGTGTGCAAGAAAGCCTGAGTTGAGCTGCTGTATGCCAGT  450

seq1  GTCCAGGGCTTGCAGGCCTCAGCTTCTTCCAGGCATGCAAGGCTATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGGCTTGCAGGCCTCAGCTTCTTCCAGGCATGCAAGGCTATGTTT  500

seq1  ACTTAATTACCTGAAGGACCACACAGACTCCTGGGACTCACTGCAGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTACCTGAAGGACCACACAGACTCCTGGGACTCACTGCAGCCCT  550

seq1  GTTAGACCAGAGCCTGCAAGTAACCCACAATCTGCATTTATCTGAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACCAGAGCCTGCAAGTAACCCACAATCTGCATTTATCTGAAAAAC  600

seq1  AAAAACAAAAACAAACAAACAAACACCTGCCCAGTTAAAAACCACAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAACAAACAAACAAACACCTGCCCAGTTAAAAACCACAGCTT  650

seq1  TGAACCACAGCTCAGCAACTGGTTAATGATACTGCAGAGACAGGAGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACAGCTCAGCAACTGGTTAATGATACTGCAGAGACAGGAGCTTG  700

seq1  TAGCTGACAACCAAGGCACAGAAGTCAGAAGCCTACTGAGTGATGCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACAACCAAGGCACAGAAGTCAGAAGCCTACTGAGTGATGCCACT  750

seq1  AGTAGTCTGAACTCACTGTGGGTTGGAAAGAATTCACACTGCAGGAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTGAACTCACTGTGGGTTGGAAAGAATTCACACTGCAGGAAGTG  800

seq1  GCAAATGAAAACCAGGGCTTGATTCCTTGTTCTGTGACCTGTCCAGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGAAAACCAGGGCTTGATTCCTTGTTCTGTGACCTGTCCAGACTA  850

seq1  TGGGCCAACTGTCTGACTACAAACAAGGTATTGCAAAAGCCCTCCCGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAACTGTCTGACTACAAACAAGGTATTGCAAAAGCCCTCCCGGCA  900

seq1  CACAGATCTACATACT-GGCCTTGTCTTACAATGTTTATTCACTGCCCCT  949
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  CACAGATCTACATACTGGGCCTTGTCTTACAATG-TTATTCACTGCCCCT  949

seq1  TTACAGAGAAAGTTTTGTAAGCCAAAGAAACTGATAAAGATGACAGGCTA  999
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  TTACAGAGAAAGTTTTGT-AGCCAAAG-AACTGATAAAGATGACAGGCTA  997

seq1  GCAAAACCTCACATCAAATTGAGCTGTTGCATCAGAAACAGCTCAC-AGA  1048
      || ||||||||||||||| ||||||| |||||||| |||||||||| |||
seq2  GC-AAACCTCACATCAAA-TGAGCTG-TGCATCAG-AACAGCTCACAAGA  1043

seq1  TACAAAGTGAAGAAATGTATTTCCTGGCACAACTAAAAGGGCAATGGCCT  1098
      ||| ||||| ||||||||||||||||   | |||||    || || | ||
seq2  TAC-AAGTG-AGAAATGTATTTCCTG---CCACTAA----GC-ATTGACT  1083

seq1  CAGTGGCAGGAGTCTGGGGGTCCAACTCTCCTGTTTTACTGCTGTCAACA  1148
      |||| ||||||||||  | |||  ||||| ||| ||||||||  |||   
seq2  CAGTTGCAGGAGTCT--GAGTC--ACTCT-CTG-TTTACTGCGTTCA---  1124

seq1  CAAAGCACTCCTGTTCCAATATACTTGTACATT--AATAAGGGTGGCAAA  1196
         |||||| ||| |||| ||    ||||||||  |||||||||||| ||
seq2  -CTAGCACT-CTG-TCCATTA---CTGTACATTTAAATAAGGGTGGCCAA  1168

seq1  AAG  1199
      |||
seq2  AAG  1171