BAC Information

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BAC

Clone NameB6Ng01-268I05
Chromosome1 (Build37)
Map Location 134,937,329 - 135,102,776
singlet/doubletdoublet
Overlap genePik3c2b, Ppp1r15b
Upstream geneMfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636
Downstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268I05.bB6Ng01-268I05.g
ACCGA071349GA071350
length521916
definitionB6Ng01-268I05.b B6Ng01-268I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,102,256 - 135,102,776)(134,937,329 - 134,938,237)
sequence
gaattcaagagcagcctggacatcttggtgagacttggtggtccatgcct
ccatgagttcaatgtcatcctttgctacacagagttgcaggccagcctag
accatgggagaacatagctcaaaagccaaatagataaaataaatggcaaa
tcaagtgaacttgtggccaggatttaacaaactcctagaaactggccagg
tctctagctctggcctggggtaccttttctgtagctacctgaacacatgg
ggcaagaaaccagggtgctagccgggcagtggtggtgcacacctttaatc
ccagcacttgggaagtagaggcaggcagatttctaagttcgaggccagcc
tggtctacaggatgagttccaggacagccagggctatacagagaaaccct
gttacaaaacaaacaaacaaacaaacaaacaaacaaaaaaaaccagggtg
ctattccctttctggcagaactattgcactatatcctcgtgttctctctc
tctctctctctctctctctct
gaattccacagaagttaaatcatatactgtctgtatctctttatctgact
taacacatggagtgtgatttccccctatgttcattagtgcagatacaaat
gagactttattattattattattattattattattattttaggtttcttg
gtgtagctctggctgtcctggaactcactttgtagaccaggctggcctcg
aactcagagatccacctgactctgctgagattaaaggtatgtgccaccac
tgataggcagtttccttcattcttaaaactgaagagtattctgcactaga
taaggatcagtcatgttttccttacacgctcatttattaatggacccctt
aaggcgggtatgtggctgtcaggaataatgatgtaatgagaaggctggct
tggaattccccagctgatctgctgacctcaaaggtacagcaatcctcctg
cctctgcctcctaaggctgtgattacaggtgtgtcaatctggcctctcct
gcattgctaataatagtactctagccttctaaacccacagtttagtgtct
ggccctgaagccatttacaacaaatgaaaaagttgcatgccttaaaaaag
actagggggtcaaaaagatggcgccacagttcagaatactgactgctctt
ccagaagacctgggtttgattctcagcaccacaaagtgacttacaaccac
ctgaacttacagatctaggaaatctatccttcctcctctggcctctacag
gcaacgagaatgcattctgtacacaaacaaacatgcagccaaaacactca
gacacataaaatagtgataaaaagacattttcaagaagtcttcaatggga
gccaactgtagcagtgcaggcctgttaattgcttgcactcaagagcggtg
ggggggttgtgcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135102256_135102776
seq2: B6Ng01-268I05.b_51_571 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACGAGGATATAGTGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACGAGGATATAGTGCAATA  50

seq1  GTTCTGCCAGAAAGGGAATAGCACCCTGGTTTTTTTTGTTTGTTTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCCAGAAAGGGAATAGCACCCTGGTTTTTTTTGTTTGTTTGTTTG  100

seq1  TTTGTTTGTTTGTTTTGTAACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTGTAACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  150

seq1  TGGAACTCATCCTGTAGACCAGGCTGGCCTCGAACTTAGAAATCTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCATCCTGTAGACCAGGCTGGCCTCGAACTTAGAAATCTGCCTG  200

seq1  CCTCTACTTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCCGG  250

seq1  CTAGCACCCTGGTTTCTTGCCCCATGTGTTCAGGTAGCTACAGAAAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCCTGGTTTCTTGCCCCATGTGTTCAGGTAGCTACAGAAAAGGT  300

seq1  ACCCCAGGCCAGAGCTAGAGACCTGGCCAGTTTCTAGGAGTTTGTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGCCAGAGCTAGAGACCTGGCCAGTTTCTAGGAGTTTGTTAAAT  350

seq1  CCTGGCCACAAGTTCACTTGATTTGCCATTTATTTTATCTATTTGGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCACAAGTTCACTTGATTTGCCATTTATTTTATCTATTTGGCTTT  400

seq1  TGAGCTATGTTCTCCCATGGTCTAGGCTGGCCTGCAACTCTGTGTAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATGTTCTCCCATGGTCTAGGCTGGCCTGCAACTCTGTGTAGCAA  450

seq1  AGGATGACATTGAACTCATGGAGGCATGGACCACCAAGTCTCACCAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACATTGAACTCATGGAGGCATGGACCACCAAGTCTCACCAAGAT  500

seq1  GTCCAGGCTGCTCTTGAATTC  521
      |||||||||||||||||||||
seq2  GTCCAGGCTGCTCTTGAATTC  521

seq1: chr1_134937329_134938237
seq2: B6Ng01-268I05.g_68_983

seq1  GAATTCCACAGAAGTTAAATCATATACTGTCTGTATCTCTTTATCTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAAGTTAAATCATATACTGTCTGTATCTCTTTATCTGACT  50

seq1  TAACACATGGAGTGTGATTTCCCCCTATGTTCATTAGTGCAGATACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATGGAGTGTGATTTCCCCCTATGTTCATTAGTGCAGATACAAAT  100

seq1  GAGACTTTATTATTATTATTATTATTATTATTATTATTTTAGGTTTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTATTATTATTATTATTATTATTATTATTATTTTAGGTTTCTTG  150

seq1  GTGTAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  200

seq1  AACTCAGAGATCCACCTGACTCTGCTGAGATTAAAGGTATGTGCCACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGATCCACCTGACTCTGCTGAGATTAAAGGTATGTGCCACCAC  250

seq1  TGATAGGCAGTTTCCTTCATTCTTAAAACTGAAGAGTATTCTGCACTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCAGTTTCCTTCATTCTTAAAACTGAAGAGTATTCTGCACTAGA  300

seq1  TAAGGATCAGTCATGTTTTCCTTACACGCTCATTTATTAATGGACCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATCAGTCATGTTTTCCTTACACGCTCATTTATTAATGGACCCCTT  350

seq1  AAGGCGGGTATGTGGCTGTCAGGAATAATGATGTAATGAGAAGGCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGGGTATGTGGCTGTCAGGAATAATGATGTAATGAGAAGGCTGGCT  400

seq1  TGGAATTCCCCAGCTGATCTGCTGACCTCAAAGGTACAGCAATCCTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCCCCAGCTGATCTGCTGACCTCAAAGGTACAGCAATCCTCCTG  450

seq1  CCTCTGCCTCCTAAGGCTGTGATTACAGGTGTGTCAATCTGGCCTCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCTAAGGCTGTGATTACAGGTGTGTCAATCTGGCCTCTCCT  500

seq1  GCATTGCTAATAATAGTACTCTAGCCTTCTAAACCCACAGTTTAGTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCTAATAATAGTACTCTAGCCTTCTAAACCCACAGTTTAGTGTCT  550

seq1  GGCCCTGAAGCCATTTACAACAAATGAAAAAGTTGCATGCCTTAAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGAAGCCATTTACAACAAATGAAAAAGTTGCATGCCTTAAAAAAG  600

seq1  ACTAGGGGGTCAAAAAGATGGCGCCACAGTTCAGAATACTGACTGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGGGTCAAAAAGATGGCGCCACAGTTCAGAATACTGACTGCTCTT  650

seq1  CCAGAAGACCTGGGTTTGATTCTCAGCACCACAAAGTGACTTACAACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGACCTGGGTTTGATTCTCAGCACCACAAAGTGACTTACAACCAC  700

seq1  CTGAACTTACAGATCTAGGAAATCTATCC-TCCTCCTCTGGCCTCTACAG  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGAACTTACAGATCTAGGAAATCTATCCTTCCTCCTCTGGCCTCTACAG  750

seq1  GCAACGAGAATGCATTCTGTACACAAACAAACATGCAGCCAAAACACTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGAGAATGCATTCTGTACACAAACAAACATGCAGCCAAAACACTCA  800

seq1  GACACATAAAATAGTGATAAAAAGACA-TTTCAAGAAGTCTTCAAT-GGA  847
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  GACACATAAAATAGTGATAAAAAGACATTTTCAAGAAGTCTTCAATGGGA  850

seq1  GCCAACTGTAGCAGTGCAGGCCTG-TAATTGC-TGCACTCAAGAGGCGGT  895
      |||||||||||||||||||||||| ||||||| ||||||||||| |||||
seq2  GCCAACTGTAGCAGTGCAGGCCTGTTAATTGCTTGCACTCAAGA-GCGGT  899

seq1  GGGGG---TGTGCTGGG  909
      |||||   |||||| ||
seq2  GGGGGGGTTGTGCTTGG  916