BAC Information

Click to search

BAC

Clone NameB6Ng01-268I21
Chromosome1 (Build37)
Map Location 66,029,675 - 66,145,847
singlet/doubletdoublet
Overlap geneLOC667781, EG667786
Upstream geneLOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
Downstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268I21.bB6Ng01-268I21.g
ACCGA071381GA071382
length9451,077
definitionB6Ng01-268I21.b B6Ng01-268I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,029,675 - 66,030,561)(66,144,780 - 66,145,847)
sequence
gaattcagtgcccattcatcacttatcccctaaggacagacaattgcagg
acacagcctagagtccatgtgaagccaattaaaactgtcttcaggcagta
cgcagaccattgcagagctgtgtggagcaccagaggaccacttgccagag
agttacaagaaacagagagatgtgccttcccaactttgtccctcatggtc
acttcacaatcttaccaatcactgattaactagccagaatgtttatatag
ggctctgatttacaaaaccaccaccacaacaaaatgttttcacattaatt
ctctgacaatgcacatttaaaatctcagtctcaggtcagaaatttacatt
ctcttaccgagtggaagagggaatcctacaaagcaccatgctgaggtcct
tggtccatttgaacttgagtgttgtgcaaggtgagaaatgtaggtctaat
ttcattcctctacacacagacagccagttggaccagcaccatttactgaa
aatgcttccttttatccattttataattttggcatctttgtcaaagatca
agtgtccgtgagtgtgtagttttatttctgggtcttcgattctattccat
tgatcaccgtatctgtctctatatcaataccatgcagtttttatcactat
tgctctgtagtaaagcttgagatgagaggtagtgattccctcagccattc
ttttattgttaagaattgtttttactattctattttttcttttttttttc
ttttttcctttccagatgaatttgagaattgctctttccaagtcttggaa
gacattgtgttgagattttgatggggatttcattgaatctatagattgcc
tttggtattggccatttttactatgttaattctgccaatccatgagcatg
ggagatctctccattttctgagatctttaatttctttcttgagac
gaattcaaggtgtttgctgcacaactcatacctgctgaatctcaattcct
gattgcaggattctctaccaatgtcttatttgtacaggagttcaagaaaa
tacatggtaaggaaattagggaagtagttcccaggtgttttagttagggt
tttactgctgtgaaaagacaccatgaccaaggtcagtcttacaaaataca
acatttaattggggtttgcttacagatttagaggttcagtccatcatcat
caaggtgggagcagggcagcatctaggcaggcatggtgcacacagagttg
agagttctacattgtaatctgaaggctgctagtggaagactgacctccag
gtagctaggtgacactcacagtgacacatccaacagggccacacctacta
atagtgccactcctgggcagagcatgtataaaccatcacaccaaggttgt
ggccataataataaacaatacaatgtataagagagtcaaacagtgcttag
tgttgcaagcaattcccagcacacattgtgtgggatgtttgtaaaggtcc
actactcttgacagctgaatgttgttgtctttttaaagataattttataa
agtatttatttttatccattcatgtgaaaaattctgttggtttaactggg
tctttgtattcttgtagagaaattttaagataagaagtcaagagtaatct
acttgttagtagatcttttttctttctttctttctttctttctttctttc
tttctttctttctttctttctttctttctttctttctttctttcttcctt
ccttccttccttccttcctttctttcctctctctctctctctctcttcct
cctttctttctttctttctttcttcctttctttctttctttctttctttc
tttcttcctttcttctttcttctggggttaatctaaagctttgcacaagt
aaacaagcactttatgactgatcacatccccagcccaatgtatcttcttt
tacccgaatcctagtattgtaagccattcctcttcttatgagaacagaaa
gaagccacggtattttgttgaaatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66029675_66030561
seq2: B6Ng01-268I21.b_45_931

seq1  GAATTCAGTGCCCATTCATCACTTATCCCCTAAGGACAGACAATTGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCCATTCATCACTTATCCCCTAAGGACAGACAATTGCAGG  50

seq1  ACACAGCCTAGAGTCCATGTGAAGCCAATTAAAACTGTCTTCAGGCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCTAGAGTCCATGTGAAGCCAATTAAAACTGTCTTCAGGCAGTA  100

seq1  CGCAGACCATTGCAGAGCTGTGTGGAGCACCAGAGGACCACTTGCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGACCATTGCAGAGCTGTGTGGAGCACCAGAGGACCACTTGCCAGAG  150

seq1  AGTTACAAGAAACAGAGAGATGTGCCTTCCCAACTTTGTCCCTCATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAGAAACAGAGAGATGTGCCTTCCCAACTTTGTCCCTCATGGTC  200

seq1  ACTTCACAATCTTACCAATCACTGATTAACTAGCCAGAATGTTTATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACAATCTTACCAATCACTGATTAACTAGCCAGAATGTTTATATAG  250

seq1  GGCTCTGATTTACAAAACCACCACCACAACAAAATGTTTTCACATTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGATTTACAAAACCACCACCACAACAAAATGTTTTCACATTAATT  300

seq1  CTCTGACAATGCACATTTAAAATCTCAGTCTCAGGTCAGAAATTTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACAATGCACATTTAAAATCTCAGTCTCAGGTCAGAAATTTACATT  350

seq1  CTCTTACCGAGTGGAAGAGGGAATCCTACAAAGCACCATGCTGAGGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCGAGTGGAAGAGGGAATCCTACAAAGCACCATGCTGAGGTCCT  400

seq1  TGGTCCATTTGAACTTGAGTGTTGTGCAAGGTGAGAAATGTAGGTCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATTTGAACTTGAGTGTTGTGCAAGGTGAGAAATGTAGGTCTAAT  450

seq1  TTCATTCCTCTACACACAGACAGCCAGTTGGACCAGCACCATTTACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCTCTACACACAGACAGCCAGTTGGACCAGCACCATTTACTGAA  500

seq1  AATGCTTCCTTTTATCCATTTTATAATTTTGGCATCTTTGTCAAAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCCTTTTATCCATTTTATAATTTTGGCATCTTTGTCAAAGATCA  550

seq1  AGTGTCCGTGAGTGTGTAGTTTTATTTCTGGGTCTTCGATTCTATTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCGTGAGTGTGTAGTTTTATTTCTGGGTCTTCGATTCTATTCCAT  600

seq1  TGATCACCGTATCTGTCTCTATATCAATACCATGCAGTTTTTATCACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACCGTATCTGTCTCTATATCAATACCATGCAGTTTTTATCACTAT  650

seq1  TGCTCTGTAGTAAAGCTTGAGATGAGAGGTAGTGATTCCCTCAGCCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTAGTAAAGCTTGAGATGAGAGGTAGTGATTCCCTCAGCCATTC  700

seq1  TTTTATTGTTAAGAATTGTTTTTACTATTCTATTTTTTCTTTTTTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGTTAAGAATTGTTTTTACTATTCTATTTTTTCTTTTTTTTTTC  750

seq1  TTTTTTCCTTTCCAGATGAATTTGAGAATTGCTCTTTCCAAGTCTTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTTTCCAGATGAATTTGAGAATTGCTCTTTCCAAGTCTTGGAA  800

seq1  GACATTGTGTTGAGATTTTGATGGGGATTTCATTGAATCTATAGATTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTGTTGAGATTTTGATGGGGATTTCATTGAATCTATAGATTGCC  850

seq1  TTTGGTATTGGCCATTTTTACTATGTTAATTCTGCCA  887
      |||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATTGGCCATTTTTACTATGTTAATTCTGCCA  887

seq1: chr1_66144780_66145847
seq2: B6Ng01-268I21.g_66_1142 (reverse)

seq1  TGGATTTCAAC-AAATACCCTTGC-TCTTTCTGTCTTCATAAG-AGA-GA  46
      ||||||||||| ||||||| | || |||||||||  ||||||| ||| ||
seq2  TGGATTTCAACAAAATACCGTGGCTTCTTTCTGTTCTCATAAGAAGAGGA  50

seq1  AT-GCTTACAATACTAGGATTC-GGTAAA--GAGATACATTGGGCTGGGG  92
      || ||||||||||||||||||| ||||||   ||||||||||||||||||
seq2  ATGGCTTACAATACTAGGATTCGGGTAAAAGAAGATACATTGGGCTGGGG  100

seq1  ATGTGATCAGTCATAAAGTGCTTGTTTACTTGTGCAAAGCCTTAGATTTA  142
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  ATGTGATCAGTCATAAAGTGCTTGTTTACTTGTGCAAAGCTTTAGA-TTA  149

seq1  ACCCCAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  192
      ||||||| ||||||| ||||||| ||||||||||||||||||||||||||
seq2  ACCCCAG-AAGAAAG-AAGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAA  197

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAGGAAGAGAGAGAGAGAGAG  242
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGAAAGAAAGAAAGAAAGAAAGGAGGAAGAGAGAGAGAGAGAG  247

seq1  AGAGGAAAGAAAGGAAGGAAGGAAGGAAGGAAGG----AAGAAAGAAAGA  288
      ||||||||||||||||||||||||||||||||||    ||||||||||||
seq2  AGAGGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGA  297

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  347

seq1  GAAAGAAAGAAAAAAGATCTACTAACAAGTAGATTACTCTTGACTTCTTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAAAAGATCTACTAACAAGTAGATTACTCTTGACTTCTTA  397

seq1  TCTTAAAATTTCTCTACAAGAATACAAAGACCCAGTTAAACCAACAGAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATTTCTCTACAAGAATACAAAGACCCAGTTAAACCAACAGAAT  447

seq1  TTTTCACATGAATGGATAAAAATAAATACTTTATAAAATTATCTTTAAAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATGAATGGATAAAAATAAATACTTTATAAAATTATCTTTAAAA  497

seq1  AGACAACAACATTCAGCTGTCAAGAGTAGTGGACCTTTACAAACATCCCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAACATTCAGCTGTCAAGAGTAGTGGACCTTTACAAACATCCCA  547

seq1  CACAATGTGTGCTGGGAATTGCTTGCAACACTAAGCACTGTTTGACTCTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTGTGCTGGGAATTGCTTGCAACACTAAGCACTGTTTGACTCTC  597

seq1  TTATACATTGTATTGTTTATTATTATGGCCACAACCTTGGTGTGATGGTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATTGTATTGTTTATTATTATGGCCACAACCTTGGTGTGATGGTT  647

seq1  TATACATGCTCTGCCCAGGAGTGGCACTATTAGTAGGTGTGGCCCTGTTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGCTCTGCCCAGGAGTGGCACTATTAGTAGGTGTGGCCCTGTTG  697

seq1  GATGTGTCACTGTGAGTGTCACCTAGCTACCTGGAGGTCAGTCTTCCACT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCACTGTGAGTGTCACCTAGCTACCTGGAGGTCAGTCTTCCACT  747

seq1  AGCAGCCTTCAGATTACAATGTAGAACTCTCAACTCTGTGTGCACCATGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTTCAGATTACAATGTAGAACTCTCAACTCTGTGTGCACCATGC  797

seq1  CTGCCTAGATGCTGCCCTGCTCCCACCTTGATGATGATGGACTGAACCTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGATGCTGCCCTGCTCCCACCTTGATGATGATGGACTGAACCTC  847

seq1  TAAATCTGTAAGCAAACCCCAATTAAATGTTGTATTTTGTAAGACTGACC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGTAAGCAAACCCCAATTAAATGTTGTATTTTGTAAGACTGACC  897

seq1  TTGGTCATGGTGTCTTTTCACAGCAGTAAAACCCTAACTAAAACACCTGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATGGTGTCTTTTCACAGCAGTAAAACCCTAACTAAAACACCTGG  947

seq1  GAACTACTTCCCTAATTTCCTTACCATGTATTTTCTTGAACTCCTGTACA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTTCCCTAATTTCCTTACCATGTATTTTCTTGAACTCCTGTACA  997

seq1  AATAAGACATTGGTAGAGAATCCTGCAATCAGGAATTGAGATTCAGCAGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACATTGGTAGAGAATCCTGCAATCAGGAATTGAGATTCAGCAGG  1047

seq1  TATGAGTTGTGCAGCAAACACCTTGAATTC  1068
      ||||||||||||||||||||||||||||||
seq2  TATGAGTTGTGCAGCAAACACCTTGAATTC  1077