BAC Information

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BAC

Clone NameB6Ng01-268O07
Chromosome1 (Build37)
Map Location 37,112,295 - 37,282,106
singlet/doubletdoublet
Overlap geneA230074B11Rik, 4921511C04Rik, Cnga3
Upstream geneHs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053
Downstream geneInpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268O07.bB6Ng01-268O07.g
ACCGA071635GA071636
length1,0311,143
definitionB6Ng01-268O07.b B6Ng01-268O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,112,295 - 37,113,311)(37,280,961 - 37,282,106)
sequence
gaattcaggtccttgcttgagttgcaagcaccctatagactgaaccatct
ctccagaccttaccattctatttttttaattacttattttatgtatatga
gtacactgttgctctcttcagacacaccagaagagggcattggatcccat
tacagatggttgtgagccaaatgtggctgctgggaattgaattcaggacc
tctggaagaacaatcagtgttcttaaccactgagccatctttccagtccc
ttagcattctattttatgtggaataaattgcaagagctttcggctttcgg
ctgaacaccccagtacagtaaaggcagttttcagctccatagcatctcca
gggaaaagcatctctgcaaaagagtttcagtatcacaaggtaactaacaa
atgttaaaccattcccaggaaaacctttgcttttgagtatattgttttct
gtatacgatggcctagaaaataaatgtgctagtttttcttttagattttg
aggtattacttttctttgaatctctgtttgatttagcatcgcagcactaa
attatgaaatgtttccagctcccctgtcccctctacatcatgaaggcagc
tctgtccttgtttctgcctttggtaacttatagtatttgcccatttaaca
gtgcatgtctactattttcttttttgttgttggctttttttttttttttt
tttttgagacagggtttctctgtatagccctggctgtcctggaactcact
ttgtagaccaggctggccttgaactcagaaatccacctgcttctgcctcc
cgagtgctgggactaaaggcgtgcgccaccattgccctactatttctata
tagaaagtttgaggacagtggattttatctctttttataaatgagacgat
gggaagaatatacattgtttgcttttcttaaaaaaaataaaaaaagaagt
tttagttattctggggcactcacctggccgagccacttacgcacccctgg
ttcgagaactttctggtaaccaaccctcccc
gaattcaacttggcctttattgttggcctggctatgtgactgggtcaggc
attgacctgactcacatacatgcccataatcttttacttctcttttcttg
tactaaaacctgaagccctggagaaatccttcattttatttaaaaactgc
ttctctagattccccacgcatacataaagaatggaatgaaaagcacacag
ggtcagggaagtggcagagatctgaaggatggccgtcaccataggacacc
tcacctgtcccgggcacctgctctctgtatgctctggtctctgttctgat
gtcttgaactgtgtactaacttattggatcctcatacagtgccatgagtg
attcacactggaaatgtccatctcataaaccaaactccaaacagccaaca
attcccacggtgttccatgtctggagccttttcttgagccatttttaatg
gccgtaatattcttcctttctacccccaaacttcagggtagaagaaaaat
tcacaatactgagacctgtaagccagccataggaacacacatcgccccat
acccagttccaagggttagatacacgctagcaattttagggtgacataga
gggaaagcccccaaagccttgcacaacaagccgtgtttgagagtttaagt
ggctttatgtaagagacaagttaagagatcttgaaggagatatagatcaa
tgggaagatgttcactgattgtgtctaaatgtcaactgacaaatggacca
acaatatgtggtaaatccacataatagatcactacctgccaaggaaaaag
aatgaaatactagtttgtttgttttttaattaaaatccatattacatgct
gtaacatggattgacattatgctttgtggaaaaagccagacatggaagac
tgtgatttcatgggaaactcgaagaattagataaatccataaagacagaa
agtagatttaatttgccaggttagagtaggaaatttagaaagaaggaggg
atgttaataggcacaggatgtctttttggggggtgtttacagttctaaaa
ttaattgtgatggtccgaactgtggatttattaacaatccaataccttag
tgagtgatcttgtagtatgtatgaatttccttaaagaaataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37112295_37113311
seq2: B6Ng01-268O07.b_47_1077

seq1  GAATTCAGGTCCTTGCTTGAGTTGCAAGCACCCTATAGACTGAACCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCTTGCTTGAGTTGCAAGCACCCTATAGACTGAACCATCT  50

seq1  CTCCAGACCTTACCATTCTATTTTTTTAATTACTTATTTTATGTATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACCTTACCATTCTATTTTTTTAATTACTTATTTTATGTATATGA  100

seq1  GTACACTGTTGCTCTCTTCAGACACACCAGAAGAGGGCATTGGATCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTTGCTCTCTTCAGACACACCAGAAGAGGGCATTGGATCCCAT  150

seq1  TACAGATGGTTGTGAGCCAAATGTGGCTGCTGGGAATTGAATTCAGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGTTGTGAGCCAAATGTGGCTGCTGGGAATTGAATTCAGGACC  200

seq1  TCTGGAAGAACAATCAGTGTTCTTAACCACTGAGCCATCTTTCCAGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGAACAATCAGTGTTCTTAACCACTGAGCCATCTTTCCAGTCCC  250

seq1  TTAGCATTCTATTTTATGTGGAATAAATTGCAAGAGCTTTCGGCTTTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTCTATTTTATGTGGAATAAATTGCAAGAGCTTTCGGCTTTCGG  300

seq1  CTGAACACCCCAGTACAGTAAAGGCAGTTTTCAGCTCCATAGCATCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACCCCAGTACAGTAAAGGCAGTTTTCAGCTCCATAGCATCTCCA  350

seq1  GGGAAAAGCATCTCTGCAAAAGAGTTTCAGTATCACAAGGTAACTAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGCATCTCTGCAAAAGAGTTTCAGTATCACAAGGTAACTAACAA  400

seq1  ATGTTAAACCATTCCCAGGAAAACCTTTGCTTTTGAGTATATTGTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAACCATTCCCAGGAAAACCTTTGCTTTTGAGTATATTGTTTTCT  450

seq1  GTATACGATGGCCTAGAAAATAAATGTGCTAGTTTTTCTTTTAGATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACGATGGCCTAGAAAATAAATGTGCTAGTTTTTCTTTTAGATTTTG  500

seq1  AGGTATTACTTTTCTTTGAATCTCTGTTTGATTTAGCATCGCAGCACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTACTTTTCTTTGAATCTCTGTTTGATTTAGCATCGCAGCACTAA  550

seq1  ATTATGAAATGTTTCCAGCTCCCCTGTCCCCTCTACATCATGAAGGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAATGTTTCCAGCTCCCCTGTCCCCTCTACATCATGAAGGCAGC  600

seq1  TCTGTCCTTGTTTCTGCCTTTGGTAACTTATAGTATTTGCCCATTTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTTGTTTCTGCCTTTGGTAACTTATAGTATTTGCCCATTTAACA  650

seq1  GTGCATGTCTACTATTTTCTTTTTTGTTGTTGGCTTTTTTTTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTCTACTATTTTCTTTTTTGTTGTTGGCTTTTTTTTTTTTTTTT  700

seq1  TTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  750

seq1  TTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCTTCTGCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCTTCTGCCTCC  800

seq1  CGAGTGCTGGGACTAAAGGCGTGCGCCACCA-TGCCCTACTATTTTCTAT  849
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  CGAGTGCTGGGACTAAAGGCGTGCGCCACCATTGCCCTACTA-TTTCTAT  849

seq1  ATAGAAAGTTTGAGGACAGTGGATTTAATCTCTTTTATTAGATGAGACGA  899
      |||||||||||||||||||||||||| |||||||||  || |||||||||
seq2  ATAGAAAGTTTGAGGACAGTGGATTTTATCTCTTTTTATAAATGAGACGA  899

seq1  TGGGATGAATAAACAT--GTTGC-TTTCTTAAAAAAAA-AAAAAAAG-AG  944
      ||||| ||||| ||||   |||| |||||||||||||| |||||||| ||
seq2  TGGGAAGAATATACATTGTTTGCTTTTCTTAAAAAAAATAAAAAAAGAAG  949

seq1  TTTTAG-TATCTTGGGCCACTCA-CTGCCGGAG-CACTGACGCACCC--T  989
      |||||| |||  |||| |||||| ||| | ||| |||| ||||||||   
seq2  TTTTAGTTATTCTGGGGCACTCACCTGGCCGAGCCACTTACGCACCCCTG  999

seq1  GTCAGAGA--CTTCTGG--AACAACCCTCCCC  1017
      ||  ||||   ||||||  | |||||||||||
seq2  GTTCGAGAACTTTCTGGTAACCAACCCTCCCC  1031

seq1: chr1_37280961_37282106
seq2: B6Ng01-268O07.g_67_1209 (reverse)

seq1  ATTATTTCTTTTAGAGAAATCATTTACATACTACAAAGATCACTCACTTA  50
      ||||||||||| ||  || |||  |||||||||| |||||||||||| ||
seq2  ATTATTTCTTTAAGGAAATTCA--TACATACTAC-AAGATCACTCAC-TA  46

seq1  AAGTATTGATTTTGTTTTATTATATCCACAGTTTGGAACCATCACAATAT  100
      | ||||||  |   | ||| || |||||||||| || ||||||||||| |
seq2  AGGTATTGGAT---TGTTAATAAATCCACAGTTCGG-ACCATCACAAT-T  91

seq1  AATTTTAGAACTGTAAACACCCCC--AAAAGACATCCTGTGCCTATTAAC  148
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  AATTTTAGAACTGTAAACACCCCCCAAAAAGACATCCTGTGCCTATTAAC  141

seq1  ATCCCT-CTTCTTTCTAAATTCCCTACTCTAACCTTGGCAATT-AATCTA  196
      |||||| |||||||||||||| ||||||||||||| |  |||| ||||||
seq2  ATCCCTCCTTCTTTCTAAATTTCCTACTCTAACCTGGCAAATTAAATCTA  191

seq1  CTTTCTGTCTTTATGGATTTATCT-ATTCTTCGAGTTT-CCATGAAATCA  244
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  CTTTCTGTCTTTATGGATTTATCTAATTCTTCGAGTTTCCCATGAAATCA  241

seq1  CAGTCTTCCATGTCTGGCTTTTTCCACAAAGCATAATGTCAATCCATGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCCATGTCTGGCTTTTTCCACAAAGCATAATGTCAATCCATGTT  291

seq1  ACAGCATGTAATATGGATTTTAATTAAAAAACAAACAAACTAGTATTTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGTAATATGGATTTTAATTAAAAAACAAACAAACTAGTATTTCA  341

seq1  TTCTTTTTCCTTGGCAGGTAGTGATCTATTATGTGGATTTACCACATATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCCTTGGCAGGTAGTGATCTATTATGTGGATTTACCACATATT  391

seq1  GTTGGTCCATTTGTCAGTTGACATTTAGACACAATCAGTGAACATCTTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCCATTTGTCAGTTGACATTTAGACACAATCAGTGAACATCTTCC  441

seq1  CATTGATCTATATCTCCTTCAAGATCTCTTAACTTGTCTCTTACATAAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCTATATCTCCTTCAAGATCTCTTAACTTGTCTCTTACATAAAG  491

seq1  CCACTTAAACTCTCAAACACGGCTTGTTGTGCAAGGCTTTGGGGGCTTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAAACTCTCAAACACGGCTTGTTGTGCAAGGCTTTGGGGGCTTTC  541

seq1  CCTCTATGTCACCCTAAAATTGCTAGCGTGTATCTAACCCTTGGAACTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGTCACCCTAAAATTGCTAGCGTGTATCTAACCCTTGGAACTGG  591

seq1  GTATGGGGCGATGTGTGTTCCTATGGCTGGCTTACAGGTCTCAGTATTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGGCGATGTGTGTTCCTATGGCTGGCTTACAGGTCTCAGTATTGT  641

seq1  GAATTTTTCTTCTACCCTGAAGTTTGGGGGTAGAAAGGAAGAATATTACG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTCTTCTACCCTGAAGTTTGGGGGTAGAAAGGAAGAATATTACG  691

seq1  GCCATTAAAAATGGCTCAAGAAAAGGCTCCAGACATGGAACACCGTGGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAAAAATGGCTCAAGAAAAGGCTCCAGACATGGAACACCGTGGGA  741

seq1  ATTGTTGGCTGTTTGGAGTTTGGTTTATGAGATGGACATTTCCAGTGTGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGCTGTTTGGAGTTTGGTTTATGAGATGGACATTTCCAGTGTGA  791

seq1  ATCACTCATGGCACTGTATGAGGATCCAATAAGTTAGTACACAGTTCAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCATGGCACTGTATGAGGATCCAATAAGTTAGTACACAGTTCAAG  841

seq1  ACATCAGAACAGAGACCAGAGCATACAGAGAGCAGGTGCCCGGGACAGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAACAGAGACCAGAGCATACAGAGAGCAGGTGCCCGGGACAGGT  891

seq1  GAGGTGTCCTATGGTGACGGCCATCCTTCAGATCTCTGCCACTTCCCTGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCCTATGGTGACGGCCATCCTTCAGATCTCTGCCACTTCCCTGA  941

seq1  CCCTGTGTGCTTTTCATTCCATTCTTTATGTATGCGTGGGGAATCTAGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTGCTTTTCATTCCATTCTTTATGTATGCGTGGGGAATCTAGAG  991

seq1  AAGCAGTTTTTAAATAAAATGAAGGATTTCTCCAGGGCTTCAGGTTTTAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTTTTAAATAAAATGAAGGATTTCTCCAGGGCTTCAGGTTTTAG  1041

seq1  TACAAGAAAAGAGAAGTAAAAGATTATGGGCATGTATGTGAGTCAGGTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAAAGAGAAGTAAAAGATTATGGGCATGTATGTGAGTCAGGTCA  1091

seq1  ATGCCTGACCCAGTCACATAGCCAGGCCAACAATAAAGGCCAAGTTGAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGACCCAGTCACATAGCCAGGCCAACAATAAAGGCCAAGTTGAAT  1141

seq1  TC  1146
      ||
seq2  TC  1143