BAC Information

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BAC

Clone NameB6Ng01-269K08
Chromosome1 (Build37)
Map Location 158,161,192 - 158,322,874
singlet/doubletdoublet
Overlap geneTdrd5, Nphs2, 9430070O13Rik, LOC100038991
Upstream geneXpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik
Downstream geneSoat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269K08.bB6Ng01-269K08.g
ACCGA072185GA072186
length1,196987
definitionB6Ng01-269K08.b B6Ng01-269K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,321,679 - 158,322,874)(158,161,192 - 158,161,836)
sequence
gaattctataaagacctggtgactcagcggatgatggaccagcgcatctt
acaagaactgtataacttcaagaacgtgattgaagaactgaccaggtgaa
aacgtggcggcttctcaacaggaagccgaagccagagccttgtctttacc
tgtaggaaatgctaaccacagagaacagtagtgaaaggcagaggcccctt
tgccttcagggcttagcaagaaaatcaggagatctgggtgctgctggtgg
agagacagagaatggtttattcaatcttaactgaaagtccactgcctgta
ttagttagagaaaaacccgatccacattatacatacatatcttatatttc
cagaacgcttccatggttgtaaatactagcgcttaaatttcaaagaaact
aaatatagcaattaaggttactgggctaaccttgtgtaagatgaccagtg
gcaagagtgaagagcccaggctaggcaggccagagcagggtacagcatct
gcccctgctgtgttctaaaaggtgtgcctgccacctaatgggattccacc
caggatgtgtgctggaggtcttttgatttggtttagacacacagtaactg
aaattatgtgtaaatctgattgtaggggagaaaagttttggaagtttcca
actttgagtttgatttttttgttgttgttgttcttttttttctctctctc
tttcttttttatttttttattttcagggaactttgtctggttcaggccca
tgacaggaaattaacaaaggaagcagagaaagtccagaagaacctggcag
aagctcttttggaagcggaaaagaatgccaagtgagttggtaacatttat
acagcttgataacggaatgaggagacacttgattgtccactttccccagc
ctcaggtggctggcatgtaaagttcatgtcactgtgtcacctgcttctta
gggctgtgcggaagcttgaacagtgcagtggagccctgcagctccaggtc
agtgccagccgatgaaagcctccggggcatgcagtgttttgttatccgcc
tcgactgttctggcactctacgctcaagtcagaatgcagaacagttgtga
ctgaacaatatctgttctggccctgaaacagtgacaggcattaattgcca
agcagtatatgcaagtattgcctgcactttaagagagacacaggga
gaattctaaattttatcagacacaggagccttgcctcaccataaggtcct
tctgtgtagaaattatccctggctccttagccttgaagttcagtgcaagg
tctggaaccaagaagataaaagtggagtttgttgtcattcttgttgtctg
tgctggctaattttatgtcagcgtgacacaggctagagtcatctgaaagg
agggaaccccaactgagaaagtgcctccataagactgggctgtaggcaaa
cctgaaaggcattttcttaattagtgattgataggggccggcctaaccca
catgggtggcgccatccttgacccagaggtcctgggttctataagaaagc
agactggaactgggtgtggtggtgcaagcctttaatcccagcactcggga
ggcagacgcaggtggatttctggagttcgaggccagcctggtctacaaag
tgagctccaggacagccagggctatacagagaaaccctgtctcgaaaaac
caaaaccaaacaaacaaaaaacaacaacaacaaaaaaacacccttccacc
ccaaaaaagcagattgggcatgccatggggagcaagccagtcagctgcat
cagcttctgcctccgggttcctgtcctgttttatgttcctgtcctaactc
ccttcagtgatggatagtgatgtggaaacacaaggtaaataaaccctttc
ctcccaaacttgcttttggccatggtgtttcatctcagcaatagtaaccc
taactatgacaaattggtaccaagatagcagggcattgctgtgacagacc
tgacatgttgctttggggaggattgtgtagggactttggcactttggact
ggaaaagccatgagtgttgagggctctgtgggcttggaaagataagatct
tgagggcagtgtagacaaccggagggcctgccttgtgaggtttcggaggg
aggcaggactctactgggcctatttgtgtaaagaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_158321679_158322874
seq2: B6Ng01-269K08.b_45_1240 (reverse)

seq1  TCCCTG----TCTCTTAAAATGCAAGCAATACTTTCATAATACTGCTTTT  46
      ||||||    ||||||||| |||| ||||||||| ||| |||||||  ||
seq2  TCCCTGTGTCTCTCTTAAAGTGCAGGCAATACTTGCAT-ATACTGC--TT  47

seq1  GCCAAATTAATG-CTGTCACTGTTTCAGGGGCAGAACAGATATGGTTCCT  95
      | | |||||||| ||||||||||||||||| |||||||||||| ||| | 
seq2  GGC-AATTAATGCCTGTCACTGTTTCAGGGCCAGAACAGATATTGTT-CA  95

seq1  GTCACAACTG-TCTGCCTTTCTGACCTGAGCGGTTAGAGTGCCAGAACAG  144
      |||||||||| |||| | ||||||| ||||||  ||||||||||||||||
seq2  GTCACAACTGTTCTG-CATTCTGACTTGAGCG--TAGAGTGCCAGAACAG  142

seq1  TCGAGGGCGGGATA--CAAACACTGCCTGCCCCGGAGGC-TTCATCGGCT  191
      ||||||   |||||   ||||||||| |||||||||||| ||||||||||
seq2  TCGAGG--CGGATAACAAAACACTGCATGCCCCGGAGGCTTTCATCGGCT  190

seq1  GGCACTGACCTGGAGCTGCAGGGCTCCACTGCACTG-TCAAGCTTCCGCA  240
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCACTGACCTGGAGCTGCAGGGCTCCACTGCACTGTTCAAGCTTCCGCA  240

seq1  CAGCCCTAAGAAGCAGGTGACACAGTGACATGAACTTTACATGCCAGCCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTAAGAAGCAGGTGACACAGTGACATGAACTTTACATGCCAGCCA  290

seq1  CCTGAGGCTGGGGAAAGTGGACAATCAAGTGTCTCCTCATTCCGTTATCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGCTGGGGAAAGTGGACAATCAAGTGTCTCCTCATTCCGTTATCA  340

seq1  AGCTGTATAAATGTTACCAACTCACTTGGCATTCTTTTCCGCTTCCAAAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATAAATGTTACCAACTCACTTGGCATTCTTTTCCGCTTCCAAAA  390

seq1  GAGCTTCTGCCAGGTTCTTCTGGACTTTCTCTGCTTCCTTTGTTAATTTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCTGCCAGGTTCTTCTGGACTTTCTCTGCTTCCTTTGTTAATTTC  440

seq1  CTGTCATGGGCCTGAACCAGACAAAGTTCCCTGAAAATAAAAAAATAAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGGGCCTGAACCAGACAAAGTTCCCTGAAAATAAAAAAATAAAA  490

seq1  AAGAAAGAGAGAGAGAAAAAAAAGAACAACAACAACAAAAAAATCAAACT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGAGAGAGAAAAAAAAGAACAACAACAACAAAAAAATCAAACT  540

seq1  CAAAGTTGGAAACTTCCAAAACTTTTCTCCCCTACAATCAGATTTACACA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGGAAACTTCCAAAACTTTTCTCCCCTACAATCAGATTTACACA  590

seq1  TAATTTCAGTTACTGTGTGTCTAAACCAAATCAAAAGACCTCCAGCACAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAGTTACTGTGTGTCTAAACCAAATCAAAAGACCTCCAGCACAC  640

seq1  ATCCTGGGTGGAATCCCATTAGGTGGCAGGCACACCTTTTAGAACACAGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGTGGAATCCCATTAGGTGGCAGGCACACCTTTTAGAACACAGC  690

seq1  AGGGGCAGATGCTGTACCCTGCTCTGGCCTGCCTAGCCTGGGCTCTTCAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGATGCTGTACCCTGCTCTGGCCTGCCTAGCCTGGGCTCTTCAC  740

seq1  TCTTGCCACTGGTCATCTTACACAAGGTTAGCCCAGTAACCTTAATTGCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCACTGGTCATCTTACACAAGGTTAGCCCAGTAACCTTAATTGCT  790

seq1  ATATTTAGTTTCTTTGAAATTTAAGCGCTAGTATTTACAACCATGGAAGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGTTTCTTTGAAATTTAAGCGCTAGTATTTACAACCATGGAAGC  840

seq1  GTTCTGGAAATATAAGATATGTATGTATAATGTGGATCGGGTTTTTCTCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAAATATAAGATATGTATGTATAATGTGGATCGGGTTTTTCTCT  890

seq1  AACTAATACAGGCAGTGGACTTTCAGTTAAGATTGAATAAACCATTCTCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATACAGGCAGTGGACTTTCAGTTAAGATTGAATAAACCATTCTCT  940

seq1  GTCTCTCCACCAGCAGCACCCAGATCTCCTGATTTTCTTGCTAAGCCCTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCACCAGCAGCACCCAGATCTCCTGATTTTCTTGCTAAGCCCTG  990

seq1  AAGGCAAAGGGGCCTCTGCCTTTCACTACTGTTCTCTGTGGTTAGCATTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGGGGCCTCTGCCTTTCACTACTGTTCTCTGTGGTTAGCATTT  1040

seq1  CCTACAGGTAAAGACAAGGCTCTGGCTTCGGCTTCCTGTTGAGAAGCCGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGTAAAGACAAGGCTCTGGCTTCGGCTTCCTGTTGAGAAGCCGC  1090

seq1  CACGTTTTCACCTGGTCAGTTCTTCAATCACGTTCTTGAAGTTATACAGT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTTCACCTGGTCAGTTCTTCAATCACGTTCTTGAAGTTATACAGT  1140

seq1  TCTTGTAAGATGCGCTGGTCCATCATCCGCTGAGTCACCAGGTCTTTATA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAGATGCGCTGGTCCATCATCCGCTGAGTCACCAGGTCTTTATA  1190

seq1  GAATTC  1196
      ||||||
seq2  GAATTC  1196

seq1: chr1_158161192_158161836
seq2: B6Ng01-269K08.g_65_709

seq1  GAATTCTAAATTTTATCAGACACAGGAGCCTTGCCTCACCATAAGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATTTTATCAGACACAGGAGCCTTGCCTCACCATAAGGTCCT  50

seq1  TCTGTGTAGAAATTATCCCTGGCTCCTTAGCCTTGAAGTTCAGTGCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGAAATTATCCCTGGCTCCTTAGCCTTGAAGTTCAGTGCAAGG  100

seq1  TCTGGAACCAAGAAGATAAAAGTGGAGTTTGTTGTCATTCTTGTTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACCAAGAAGATAAAAGTGGAGTTTGTTGTCATTCTTGTTGTCTG  150

seq1  TGCTGGCTAATTTTATGTCAGCGTGACACAGGCTAGAGTCATCTGAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTAATTTTATGTCAGCGTGACACAGGCTAGAGTCATCTGAAAGG  200

seq1  AGGGAACCCCAACTGAGAAAGTGCCTCCATAAGACTGGGCTGTAGGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCCCAACTGAGAAAGTGCCTCCATAAGACTGGGCTGTAGGCAAA  250

seq1  CCTGAAAGGCATTTTCTTAATTAGTGATTGATAGGGGCCGGCCTAACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGGCATTTTCTTAATTAGTGATTGATAGGGGCCGGCCTAACCCA  300

seq1  CATGGGTGGCGCCATCCTTGACCCAGAGGTCCTGGGTTCTATAAGAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTGGCGCCATCCTTGACCCAGAGGTCCTGGGTTCTATAAGAAAGC  350

seq1  AGACTGGAACTGGGTGTGGTGGTGCAAGCCTTTAATCCCAGCACTCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAACTGGGTGTGGTGGTGCAAGCCTTTAATCCCAGCACTCGGGA  400

seq1  GGCAGACGCAGGTGGATTTCTGGAGTTCGAGGCCAGCCTGGTCTACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACGCAGGTGGATTTCTGGAGTTCGAGGCCAGCCTGGTCTACAAAG  450

seq1  TGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAC  500

seq1  CAAAACCAAACAAACAAAAAACAACAACAACAAAAAAACACCCTTCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAAACAAACAAAAAACAACAACAACAAAAAAACACCCTTCCACC  550

seq1  CCAAAAAAGCAGATTGGGCATGCCATGGGGAGCAAGCCAGTCAGCTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAGCAGATTGGGCATGCCATGGGGAGCAAGCCAGTCAGCTGCAT  600

seq1  CAGCTTCTGCCTCCGGGTTCCTGTCCTGTTTTATGTTCCTGTCCT  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTGCCTCCGGGTTCCTGTCCTGTTTTATGTTCCTGTCCT  645