BAC Information

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BAC

Clone NameB6Ng01-270E18
Chromosome6 (Build37)1 (Build37)
Map Location 110,852,386 - 110,852,79621,845,066 - 21,845,718
singlet/doubletsingletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270E18.bB6Ng01-270E18.g
ACCGA072672GA072673
length938654
definitionB6Ng01-270E18.b B6Ng01-270E18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,852,386 - 110,852,796)(21,845,066 - 21,845,718)
sequence
gaattccaagatccaatgtagtaatagctttaggaatggctttttatagg
tatggaacagaaaatgctataaatgaaagcatttaaaaaccacatctgtg
tggatatcagtaaagctctgctacaggcctcatgtatcatctgatggcat
tctttgcctttgggttggtggaagataaaagagattttaccagctagtca
aatagaagttaggtcaaacacagaggtgggccagaaatgacaatggagat
gctgaagacagatcagtatatccacagcattccagctctctataatcaga
gaggttccagtctatcggccttgtagaatgtttagcacaggtgtggcctc
attctcagaacttcagttcacatctcctacattctttctgtgccctcggg
ccaggctgttttcaagtggacaatttctcattgacaaagtaatgcaggcc
tcagattccaattatcagaacatctagcagtctggccagcctcagatggt
gtcttagtcagggtttctattcctgtacaaacatcatgaccaagaagcaa
gttggggaggaaagggtttattcagcttacaattccatactgctgtttat
taccaaggaagtcaggactggaactcaagcaggtcaggaagcaggagctg
atgcagaggccatggagggatgttccttactggcttgcttctcctggctt
gcttcccctggcttgctcagcctgctctcttatagaaccaagactaccag
cccagagatggtcccacccacaaggggcctttcgcccttgatcactaatt
gagaaaatgccttacagttggatctcatggaggcatttcctcaactgaag
ctcctttctctgtgataactccagctgtgtcaagttgacacaaaactagc
cagtacagatggtctctgatattgtggtgagttccctg

gaattcagtgaacccaagtcctgcagattcttcctttgtaagaacttgtc
atccccaacttcgtacagtgttaaagacatcatcctgtcttatctagatt
aggtaaactaccttgacatcccctttgtttggatcctgtttatccataac
ctattttcatttgcccgtgggatgattctctgacatgcaaagctgagcac
atcccttcttgtttctagttctataatcagggataatataaattttaatt
agtctggcacagaggcccccatgatctagcttcatgcccactctcatttc
ttcagtcattcccagctgacaaaaatgtaagaactggcaatactacacaa
tgaatagttcgctctttcatttcccaatttcagatatgccgtgttcagtg
ggtaggttatttacttcccattaactctcctttccagtcaaccagataaa
caaccatatttgtagtgtatgtgatatgtagtgcatgtgtgcatgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatacatatgaattgtgtgtg
atttatgcacatttgtgtgttgagatatgtatacccatttatattggggg
acagagaaagatgcctaatgtcctgtggtactagtctctatcttactgcc
ttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110852386_110852796
seq2: B6Ng01-270E18.b_541_950 (reverse)

seq1  TCTGTACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCACA  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTGTACTGGCTAGTTTTGTGTCAACTTGACACA-GCTGGAGTTATCACA  49

seq1  GAAAAAGGAGCTTGAGTTGGAGAAATGCCTCCAAGAGATCCTTAGTCTCT  100
      || |||||||||| |||||  |||||||||||| |||||||         
seq2  GAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCC---------  90

seq1  TGGAAATGTAAGAAATTTTCTCAACTAGTGGTCAAGGGGGGAGGTCCCCT  150
         || ||||||  |||||||||| ||||| ||||||| | | | |||||
seq2  ---AACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGCGAAAGGCCCCT  137

seq1  TGTGGGTGGTGCCATCTCTGGGCTGGTAGTCTTGATTCTATAAGAGAGCA  200
      |||||||||  ||||||||||||||||||||||| |||||||||||||||
seq2  TGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCA  187

seq1  GGCTGAGCAAGCCAGGG--------------GAAGCAAGCCAGTAAGTAA  236
      |||||||||||||||||              |||||||||||||||| ||
seq2  GGCTGAGCAAGCCAGGGGAAGCAAGCCAGGAGAAGCAAGCCAGTAAGGAA  237

seq1  CATCGCTCCATGGCCTCTGCATCTGCTCCTGCTTCCTGACCTGCTTGAGT  286
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGT  287

seq1  TCCAGTGCTGACTTCCTTCAGTGATGAACAGCAATGTGGAAGTGTAAGCT  336
      |||||| |||||||||||  || || ||||||| | ||||| ||||||||
seq2  TCCAGTCCTGACTTCCTT-GGTAATAAACAGCAGTATGGAATTGTAAGCT  336

seq1  GAATAAACATTTTCCTCCCAAATTTGATTCTTGGTCATGGTGTTTTGTCC  386
      ||||||||  ||||||||| || ||| |||||||||||| || ||||| |
seq2  GAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATG-TTTGTAC  385

seq1  AGGAATAGAAACCCTGACTAAGACA  411
      |||||||||||||||||||||||||
seq2  AGGAATAGAAACCCTGACTAAGACA  410


seq1: chr1_21845066_21845718
seq2: B6Ng01-270E18.g_63_716

seq1  GAATTCAGTGAACCCAAGTCCTGCAGATTCTTCCTTTGTAAGAACTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAACCCAAGTCCTGCAGATTCTTCCTTTGTAAGAACTTGTC  50

seq1  ATCCCCAACTTCGTACAGTGTTAAAGACATCATCCTGTCTTATCTAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAACTTCGTACAGTGTTAAAGACATCATCCTGTCTTATCTAGATT  100

seq1  AGGTAAACTACCTTGACATCCCCTTTGTTTGGATCCTGTTTATCCATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACTACCTTGACATCCCCTTTGTTTGGATCCTGTTTATCCATAAC  150

seq1  CTATTTTCATTTGCCCGTGGGATGATTCTCTGACATGCAAAGCTGAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCATTTGCCCGTGGGATGATTCTCTGACATGCAAAGCTGAGCAC  200

seq1  ATCCCTTCTTGTTTCTAGTTCTATAATCAGGGATAATATAAATTTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCTTGTTTCTAGTTCTATAATCAGGGATAATATAAATTTTAATT  250

seq1  AGTCTGGCACAGAGGCCCCCATGATCTAGCTTCATGCCCACTCTCATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCACAGAGGCCCCCATGATCTAGCTTCATGCCCACTCTCATTTC  300

seq1  TTCAGTCATTCCCAGCTGACAAAAATGTAAGAACTGGCAATACTACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCATTCCCAGCTGACAAAAATGTAAGAACTGGCAATACTACACAA  350

seq1  TGAATAGTTCGCTCTTTCATTTCCCAATTTCAGATATGCCGTGTTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTTCGCTCTTTCATTTCCCAATTTCAGATATGCCGTGTTCAGTG  400

seq1  GGTAGGTTATTTACTTCCCATTAACTCTCCTTTCCAGTCAACCAGATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTTATTTACTTCCCATTAACTCTCCTTTCCAGTCAACCAGATAAA  450

seq1  CAACCATATTTGTAGTGTATGTGATATGTAGTGCATGTGTGCATGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATATTTGTAGTGTATGTGATATGTAGTGCATGTGTGCATGTGTGT  500

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATACATATGAATTGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATACATATGAATTGTGTGTG  550

seq1  ATTTATGCACATTTGTGTGTTGAGATATGTATACCCATTTATATT-GGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTATGCACATTTGTGTGTTGAGATATGTATACCCATTTATATTGGGGG  600

seq1  ACAGAGAAAGATGCCTAATGTCCTGTGGTACTAGTCTCCATCTTACTGCC  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAGAGAAAGATGCCTAATGTCCTGTGGTACTAGTCTCTATCTTACTGCC  650

seq1  TTGA  653
      ||||
seq2  TTGA  654


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