BAC Information

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BAC

Clone NameB6Ng01-270H17
Chromosome1 (Build37)
Map Location 160,475,680 - 160,620,233
singlet/doubletdoublet
Overlap geneAstn1
Upstream geneLztr2, LOC664935, LOC100039217, 6430517E21Rik
Downstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270H17.bB6Ng01-270H17.g
ACCGA072809GA072810
length1,2041,134
definitionB6Ng01-270H17.b B6Ng01-270H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,475,680 - 160,476,895)(160,619,086 - 160,620,233)
sequence
gaattctcactcaaaatgtttatctttggagtttttcatatacacatata
aatacatatgtatagtattctgtgtttatatacatttatatataatatat
gaataaaatatgaacatatacatgcatgtacaacatataaatgtgcacat
acatacacatatacatacatatacattcatacacatgaacatgtgcaagt
gagcacacacacacacacacacacacacacaatttcttcaaggtagtgtg
ccggtacttgacttacaaaatactttctgaatccttcagacccatatttt
taacactatgggggtggggagagaatgaatctggataagatcaactttaa
tttacttctttgggtccaactcagatgctgtgaaatattcccattagtag
cagaaaacgctgccatttgttggagacctggtctgttcttaacaaagaat
tttacccatgatttgcttacagcagcagttcccaaggtatgggttgagat
gcctttggggaactgaacagccctttcacagggatcgcctaagaccatgg
ggaaacatggatatttttgttatgatatgtgacagtagcaaaattacagt
tacgaagtagaactgaaaacaattttatggctgggagtcagcacaaactg
aggaattgtatttaaggatcacattaggaaggttgagaaccgctgtctta
catcacgccctcttcatgggtcacagctgccattttacaggccattgtaa
ggtatttttaaattatcaaccaaacagtggcgtctacttaaaatgtatgg
ctattacttttcctaatggcccctaagttgtagatataaatactaattct
gtagtaaatggaacttgtagatatttccttcagcctagcgaaggtgtgac
aatcaggaatcaccttggagagttgatttttattcctgaggctccctcag
aaagtgcattatcaccctgagcttgcgtcttggccacatcaccatgagag
atcaaataaattactaccttgctcatgttatgtgagcagaagttgagtca
agctgggagctctgaacccatccccagcgtactggctctcctgagactag
aaagaatcagctctagactgtcagagcttaaaacaggcttccatatcagc
tggtcacacagctgaataatgtttgaattatctggggaatcagaggtctc
ctga

gaattccagtcaaggcaagctggctgaatgtacattgggtcattgttagt
cattctggtcccatgaggttgtttctaacaggctaggcttcctagtagct
agttcaccgtatcatcatccttgggcagtgtgtgcaaatggagcctcagt
ccttatgtgcaatcatcagatgttcaggtctctccagaggctctgttgct
cttcagtaactggcagagttgggtgggcaggcagtgacaatgacagagta
ctgatgattttcatcagagaataggctgtcaaaatttacaatataattaa
gaaaatttagtgagggcagtgcggacagaagtacttttcagattgataag
agctttagttcactaaaacactgacaagaaataatctcattcctggacta
aagcaaacaacagccaagtcctttctgtccagggaaaaaggcctgggacc
aagcagaatcaaggctcttaggactctgatgatactctagacatgtacaa
ctgtttttttttttaaataaactccacttatttcctacagtgaaggctac
taaataatcttgcaggtagccctctctggagccatatttaacaggtatta
tctcactgcctctcaaagatcaggttgtttagaagaaaggacagaaatca
acgagaacttggagtcctggtttaaaatgggggaagagagacctaaatct
ctgttatgtccaacagtcctgtaacagagcttaggtttacctctgaggtg
tggaaacagtaacaggagagagtctgggggaaaacccatgagaaaagggc
atgggtcatttattatcttcttcagtacatgccttggctcccaacattct
gatgcttcctaagaaatgcctgagcaagggcatgaggcagcagaagcttt
atgccctcactttctgtccccaggtgtcatagacttgggaacccattaag
cagaagagcctccacattagaccctgctgtagatgcaagaatagtgctct
gagatcctgatggttgactgaagcgaaaaagtgaacaaaccaattgatac
caagtgagttcacgtatcttctaagaaaaaaaccaaaacaaacaaaacaa
aacaaaacgaacctgctgcatgagctactggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_160475680_160476895
seq2: B6Ng01-270H17.b_42_1245

seq1  GAATTCTCACTCAAAATGTTTATCTTTGGAGTTTTTCATATACACATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTCAAAATGTTTATCTTTGGAGTTTTTCATATACACATATA  50

seq1  AATACATATGTATAGTATTCTGTGTTTATATACATTTATATATAATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATATGTATAGTATTCTGTGTTTATATACATTTATATATAATATAT  100

seq1  GAATAAAATATGAACATATACATGCATGTACAACATATAAATGTGCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATATGAACATATACATGCATGTACAACATATAAATGTGCACAT  150

seq1  ACATACACATATACATACATATACATTCATACACATGAACATGTGCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACATATACATACATATACATTCATACACATGAACATGTGCAAGT  200

seq1  GAGCACACACACACACACACACACACACACAATTTCTTCAAGGTAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACACACACACACACACACACACACAATTTCTTCAAGGTAGTGTG  250

seq1  CCGGTACTTGACTTACAAAATACTTTCTGAATCCTTCAGACCCATATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTACTTGACTTACAAAATACTTTCTGAATCCTTCAGACCCATATTTT  300

seq1  TAACACTATGGGGGTGGGGAGAGAATGAATCTGGATAAGATCAACTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTATGGGGGTGGGGAGAGAATGAATCTGGATAAGATCAACTTTAA  350

seq1  TTTACTTCTTTGGGTCCAACTCAGATGCTGTGAAATATTCCCATTAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTTTGGGTCCAACTCAGATGCTGTGAAATATTCCCATTAGTAG  400

seq1  CAGAAAACGCTGCCATTTGTTGGAGACCTGGTCTGTTCTTAACAAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACGCTGCCATTTGTTGGAGACCTGGTCTGTTCTTAACAAAGAAT  450

seq1  TTTACCCATGATTTGCTTACAGCAGCAGTTCCCAAGGTATGGGTTGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCATGATTTGCTTACAGCAGCAGTTCCCAAGGTATGGGTTGAGAT  500

seq1  GCCTTTGGGGAACTGAACAGCCCTTTCACAGGGATCGCCTAAGACCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGGGAACTGAACAGCCCTTTCACAGGGATCGCCTAAGACCATGG  550

seq1  GGAAACATGGATATTTTTGTTATGATATGTGACAGTAGCAAAATTACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGGATATTTTTGTTATGATATGTGACAGTAGCAAAATTACAGT  600

seq1  TACGAAGTAGAACTGAAAACAATTTTATGGCTGGGAGTCAGCACAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAGTAGAACTGAAAACAATTTTATGGCTGGGAGTCAGCACAAACTG  650

seq1  AGGAATTGTATTTAAGGATCACATTAGGAAGGTTGAGAACCGCTGTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGTATTTAAGGATCACATTAGGAAGGTTGAGAACCGCTGTCTTA  700

seq1  CATCACGCCCTCTTCATGGGTCACAGCTGCCATTTTACAGGCCATTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACGCCCTCTTCATGGGTCACAGCTGCCATTTTACAGGCCATTGTAA  750

seq1  GGTATTTTTAAATTATCAACCAAACAGTGGCGTCTACTTAAAATGTATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTTAAATTATCAACCAAACAGTGGCGTCTACTTAAAATGTATGG  800

seq1  CTATTACTTTTCCTAATGGCCCCTAAGTTGTAGATATAAATACTAATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACTTTTCCTAATGGCCCCTAAGTTGTAGATATAAATACTAATTCT  850

seq1  GTAGTAAATGGAACTTGTAGATATTTCCTTCAGCCTAGCGAAGGTGTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAATGGAACTTGTAGATATTTCCTTCAGCCTAGCGAAGGTGTGAC  900

seq1  AATCAGGGAATCACCTTGGAGAGTTGATTTTTATTCCTGAGGCTCCCCTC  950
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  AATCA-GGAATCACCTTGGAGAGTTGATTTTTATTCCTGAGGCT-CCCTC  948

seq1  AGAAGGTGGCATTATCACCCTGAGCTTGCGTC-TGGCCACATCACCATGA  999
      |||| || |||||||||||||||||||||||| |||||||||||||||||
seq2  AGAAAGT-GCATTATCACCCTGAGCTTGCGTCTTGGCCACATCACCATGA  997

seq1  GAAGATCAAATAAATTACTACCTGGCTCATGGTTATGTGGAGCCAAGAGT  1049
      | ||||||||||||||||||||| |||||| ||||||| ||| ||  |||
seq2  G-AGATCAAATAAATTACTACCTTGCTCAT-GTTATGT-GAG-CAGAAGT  1043

seq1  TGAGTCCAAGGCTGGGAGGCTCTGAAACCCATCCCCCAGCGTACT-GCTC  1098
      ||||||  | ||||||| |||||| ||||||| |||||||||||| ||||
seq2  TGAGTC--AAGCTGGGA-GCTCTG-AACCCAT-CCCCAGCGTACTGGCTC  1088

seq1  TCCTGAGGACTTAAGGAAG-ATCAGCTCTTAAGACTGTCAGAGC-TAAAA  1146
      |||||| ||||  || ||| |||||||||  ||||||||||||| |||||
seq2  TCCTGA-GACT--AGAAAGAATCAGCTCT--AGACTGTCAGAGCTTAAAA  1133

seq1  CAGGCTTCCCACTAATCCAGCTGGTCACACAGCTGATTAATG-TTGAATT  1195
      |||||||||    |   ||||||||||||||||||| ||||| |||||||
seq2  CAGGCTTCC----ATATCAGCTGGTCACACAGCTGAATAATGTTTGAATT  1179

seq1  ATCTGGG--ATC--AGGTCTCCTGA  1216
      |||||||  |||  |||||||||||
seq2  ATCTGGGGAATCAGAGGTCTCCTGA  1204


seq1: chr1_160619086_160620233
seq2: B6Ng01-270H17.g_63_1196 (reverse)

seq1  CAGCCAGTAGCTTCATGCAGCACTGTTCGTTTTTGTTTTTGTTTTTGTTT  50
      ||||||||||| ||||||||||  |||||||||   ||||||||   | |
seq2  CAGCCAGTAGC-TCATGCAGCA-GGTTCGTTTT--GTTTTGTTT---TGT  43

seq1  TTGTTTTTGTTTTTTTCTTAGAAGATTACCTTGAAACTCACTTTGGTATC  100
      ||||||| ||||||||||||||||| ||| |   ||||||| ||||||||
seq2  TTGTTTTGGTTTTTTTCTTAGAAGA-TACGT--GAACTCAC-TTGGTATC  89

seq1  CATTGGTTTTGTTCACTTTTTCGCCTTCAGTCAACCCATCAGGATTCTCA  150
       ||||| |||||||||||||||| |||||||||| ||||||||| |||| 
seq2  AATTGG-TTTGTTCACTTTTTCG-CTTCAGTCAA-CCATCAGGA-TCTC-  134

seq1  AGAGCACTA-TCCTGCATCCTACAGCA-GGTCTAATGTGGAGGCTCTTCT  198
      ||||||||| || ||||| |||||||| ||||||||||||||||||||||
seq2  AGAGCACTATTCTTGCAT-CTACAGCAGGGTCTAATGTGGAGGCTCTTCT  183

seq1  GCCTAATGGGTTCCCAAGTCTATGACACCTGGGGACAG-AAGTGAGGGCA  247
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTAATGGGTTCCCAAGTCTATGACACCTGGGGACAGAAAGTGAGGGCA  233

seq1  TAAAGCTTCTGCTGCCTCATGCCCTTGCTCAGGCATTTCTTAGGAAGCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTCTGCTGCCTCATGCCCTTGCTCAGGCATTTCTTAGGAAGCAT  283

seq1  CAGAATGTTGGGAGCCAAGGCATGTACTGAAGAAGATAATAAATGACCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTTGGGAGCCAAGGCATGTACTGAAGAAGATAATAAATGACCCA  333

seq1  TGCCCTTTTCTCATGGGTTTTCCCCCAGACTCTCTCCTGTTACTGTTTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTTCTCATGGGTTTTCCCCCAGACTCTCTCCTGTTACTGTTTCC  383

seq1  ACACCTCAGAGGTAAACCTAAGCTCTGTTACAGGACTGTTGGACATAACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAGAGGTAAACCTAAGCTCTGTTACAGGACTGTTGGACATAACA  433

seq1  GAGATTTAGGTCTCTCTTCCCCCATTTTAAACCAGGACTCCAAGTTCTCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTAGGTCTCTCTTCCCCCATTTTAAACCAGGACTCCAAGTTCTCG  483

seq1  TTGATTTCTGTCCTTTCTTCTAAACAACCTGATCTTTGAGAGGCAGTGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTGTCCTTTCTTCTAAACAACCTGATCTTTGAGAGGCAGTGAG  533

seq1  ATAATACCTGTTAAATATGGCTCCAGAGAGGGCTACCTGCAAGATTATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACCTGTTAAATATGGCTCCAGAGAGGGCTACCTGCAAGATTATTT  583

seq1  AGTAGCCTTCACTGTAGGAAATAAGTGGAGTTTATTTAAAAAAAAAAACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCTTCACTGTAGGAAATAAGTGGAGTTTATTTAAAAAAAAAAACA  633

seq1  GTTGTACATGTCTAGAGTATCATCAGAGTCCTAAGAGCCTTGATTCTGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACATGTCTAGAGTATCATCAGAGTCCTAAGAGCCTTGATTCTGCT  683

seq1  TGGTCCCAGGCCTTTTTCCCTGGACAGAAAGGACTTGGCTGTTGTTTGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCAGGCCTTTTTCCCTGGACAGAAAGGACTTGGCTGTTGTTTGCT  733

seq1  TTAGTCCAGGAATGAGATTATTTCTTGTCAGTGTTTTAGTGAACTAAAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCAGGAATGAGATTATTTCTTGTCAGTGTTTTAGTGAACTAAAGC  783

seq1  TCTTATCAATCTGAAAAGTACTTCTGTCCGCACTGCCCTCACTAAATTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCAATCTGAAAAGTACTTCTGTCCGCACTGCCCTCACTAAATTTT  833

seq1  CTTAATTATATTGTAAATTTTGACAGCCTATTCTCTGATGAAAATCATCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTATATTGTAAATTTTGACAGCCTATTCTCTGATGAAAATCATCA  883

seq1  GTACTCTGTCATTGTCACTGCCTGCCCACCCAACTCTGCCAGTTACTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTGTCATTGTCACTGCCTGCCCACCCAACTCTGCCAGTTACTGAA  933

seq1  GAGCAACAGAGCCTCTGGAGAGACCTGAACATCTGATGATTGCACATAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACAGAGCCTCTGGAGAGACCTGAACATCTGATGATTGCACATAAG  983

seq1  GACTGAGGCTCCATTTGCACACACTGCCCAAGGATGATGATACGGTGAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGCTCCATTTGCACACACTGCCCAAGGATGATGATACGGTGAAC  1033

seq1  TAGCTACTAGGAAGCCTAGCCTGTTAGAAACAACCTCATGGGACCAGAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACTAGGAAGCCTAGCCTGTTAGAAACAACCTCATGGGACCAGAAT  1083

seq1  GACTAACAATGACCCAATGTACATTCAGCCAGCTTGCCTTGACTGGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACAATGACCCAATGTACATTCAGCCAGCTTGCCTTGACTGGAATT  1133

seq1  C  1148
      |
seq2  C  1134


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