BAC Information

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BAC

Clone NameB6Ng01-270P05
Chromosome1 (Build37)
Map Location 178,909,333 - 179,055,333
singlet/doubletdoublet
Overlap geneSdccag8, Akt3
Upstream genePld5, Cep170, LOC666235
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270P05.bB6Ng01-270P05.g
ACCGA073159GA073160
length1,1621,123
definitionB6Ng01-270P05.b B6Ng01-270P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,909,333 - 178,910,495)(179,054,198 - 179,055,333)
sequence
gaattcacacgcaaatgtatgggtgctccatcttgccacacacacacaca
cacacacacacacacacacacacacacacacacactcagaggaatatact
gtctgcctctaggacaggaattattggcttgttgtctcccattatactca
ctaatagtctaggctctctgtgctgaatttgtttcttttgcaaaggaaaa
tgcagacagtaggagcaggctcagtgtgggtgttgctcatctgggaaaca
gaactggagccctggctttaacatttggctttttagatttatccctagct
ccaaattctgctgttgctttagagctctatagggtgtttgtttgtttggt
tggtttttttcctggtttgacctggttcctcacccctccctccttgctct
gtttcctcatggctgccaggcacctccataccttcagtgggattcttaat
ctggaattatagtcaggccttccaccttcatcaaccataggcaaaatgta
gaacttagtcatttctggaagcaagcaagtgcatctcagtttgttgtttt
agacgctccattgtgcaggctggactcgcagtctgatccttcccagcctt
caggacattcaggttgaatggagtcagcctgctcactgtgctctctctgt
gtgcactggttttactctggaatctaaatgcctcaagttgcagagttcat
gtctttctgggtaccgattgcccacagcctagcacagtacattttaaatg
ggcactgtgaggccaagaaagtatttatcttagtactttaatttttcaaa
cttgattaaatatcattatgttgctaggtggaacaggaaataataaaaat
aattctaagactgagaattcagccaggggtcggagaatttatgagatcag
ggttcggtttggtgattcagtgggtgtctgtctctgccccacagggcgct
tctgtggtcaccttagtgcttcagactcagaaacatagactgtgctcaga
tggctccaggccctctgctaagcctgcaggatctgtgcagcctgggacct
cggctctaatgaaagcttgtgtgaaaagaagatggcggccacttgagttc
gctctccccttggcatcctgtaaatgtgctcattttggttttgagaactg
tttccatggaaa
gaattcttagattattaaacttcaaagagggaaaaattcttctatggaag
agtgaataactgcccagatgtctttaggttcatcctgtgtttgcaaggtc
cctacttattctgtatggtgagaagcagggtatgccagcacctgtctcaa
gaaactcctcctacaagtctgccttatgtgctgcaaatattggtctatcc
tgaaattgtctcttttccaaaacttttctttattctcttttataaatgat
aggatttctacactcctagctgcccctcttttaaatgaatgtttcctatc
taacctattttttactcacattgaaaatagaaaattatggttcttaaaac
cacccaaatgatctttatggctgaagttagagtcagatttcagatttgga
gacaaataagttcatgggttaaatcaaaacatatggagagagaaatttag
atttagcatttatcttatatatctagaagggtcattaactgtctagatag
atatgaattatgaaaattcagaataattaaattttaaaagtctgttgatc
atttagtatctaacatggtacctagaggattatatcatagtttttttata
taggaatttgacatagacactgtatagtatcattggatacatagtagatg
aagagaaaaatgggtttagtggccaaaatgaatattttattagatagttt
ctttatttacatttcaaatgttatcccctttcctggcttcccctttgaaa
accttctatcccatctctatcctcctgcttctatgagggtgttctccctc
ccacccattcctccctccctgccctggcattcccctacactggagcattg
aaccttcacaggaccaagggcttcttctcccattgatacccgacaatgcc
atcctctgctacatatgtggctggagccaagggtccatccatgtgtaatc
tttggttggtggtttagtccctggagctctaggggtctgtggttgatatg
gtgtcttctatgggtgtaaacccttcagctctcagtcatttctctactcc
tccattggggaacccatgctcagtcaatagattggttccaagcaatccac
ctcctctatttgtcaggcctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_178909333_178910495
seq2: B6Ng01-270P05.b_46_1207

seq1  GAATTCACACGCAAATGTATGGGTGCTCCATCTTGCCACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACGCAAATGTATGGGTGCTCCATCTTGCCACACACACACACA  50

seq1  CACACACACACACACACACACACACACACACACACTCAGAGGAATATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACTCAGAGGAATATACT  100

seq1  GTCTGCCTCTAGGACAGGAATTATTGGCTTGTTGTCTCCCATTATACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTCTAGGACAGGAATTATTGGCTTGTTGTCTCCCATTATACTCA  150

seq1  CTAATAGTCTAGGCTCTCTGTGCTGAATTTGTTTCTTTTGCAAAGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGTCTAGGCTCTCTGTGCTGAATTTGTTTCTTTTGCAAAGGAAAA  200

seq1  TGCAGACAGTAGGAGCAGGCTCAGTGTGGGTGTTGCTCATCTGGGAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAGTAGGAGCAGGCTCAGTGTGGGTGTTGCTCATCTGGGAAACA  250

seq1  GAACTGGAGCCCTGGCTTTAACATTTGGCTTTTTAGATTTATCCCTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGCCCTGGCTTTAACATTTGGCTTTTTAGATTTATCCCTAGCT  300

seq1  CCAAATTCTGCTGTTGCTTTAGAGCTCTATAGGGTGTTTGTTTGTTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCTGCTGTTGCTTTAGAGCTCTATAGGGTGTTTGTTTGTTTGGT  350

seq1  TGGTTTTTTTCCTGGTTTGACCTGGTTCCTCACCCCTCCCTCCTTGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTTCCTGGTTTGACCTGGTTCCTCACCCCTCCCTCCTTGCTCT  400

seq1  GTTTCCTCATGGCTGCCAGGCACCTCCATACCTTCAGTGGGATTCTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCATGGCTGCCAGGCACCTCCATACCTTCAGTGGGATTCTTAAT  450

seq1  CTGGAATTATAGTCAGGCCTTCCACCTTCATCAACCATAGGCAAAATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTATAGTCAGGCCTTCCACCTTCATCAACCATAGGCAAAATGTA  500

seq1  GAACTTAGTCATTTCTGGAAGCAAGCAAGTGCATCTCAGTTTGTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGTCATTTCTGGAAGCAAGCAAGTGCATCTCAGTTTGTTGTTTT  550

seq1  AGACGCTCCATTGTGCAGGCTGGACTCGCAGTCTGATCCTTCCCAGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCTCCATTGTGCAGGCTGGACTCGCAGTCTGATCCTTCCCAGCCTT  600

seq1  CAGGACATTCAGGTTGAATGGAGTCAGCCTGCTCACTGTGCTCTCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATTCAGGTTGAATGGAGTCAGCCTGCTCACTGTGCTCTCTCTGT  650

seq1  GTGCACTGGTTTTACTCTGGAATCTAAATGCCTCAAGTTGCAGAGTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGGTTTTACTCTGGAATCTAAATGCCTCAAGTTGCAGAGTTCAT  700

seq1  GTCTTTCTGGGTACCGATTGCCCACAGCCTAGCACAGTACATTTTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTGGGTACCGATTGCCCACAGCCTAGCACAGTACATTTTAAATG  750

seq1  GGCACTGTGAGGCCAAGAAAGTATTTATCTTAGTACTTTAATTTTTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTGAGGCCAAGAAAGTATTTATCTTAGTACTTTAATTTTTCAAA  800

seq1  CTTGATTAAATATCATTATGTTGCTAGGTGGAACAGGAAATAATAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTAAATATCATTATGTTGCTAGGTGGAACAGGAAATAATAAAAAT  850

seq1  AATTCTAAGACTGAGAATTCAGGCCAGGGGGTCGGAGAATTTATGAGATC  900
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  AATTCTAAGACTGAGAATTCA-GCCA-GGGGTCGGAGAATTTATGAGATC  898

seq1  AGGGTTCGGTTTGGTGATTCAGTGGGTGTCTGTCTCTGCCCCACAGGGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCGGTTTGGTGATTCAGTGGGTGTCTGTCTCTGCCCCACAGGGCG  948

seq1  C-TCTGTGGTCACCTAAGTGCTTCAGACTCAGAAACATAGACTGTGCTCA  999
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGTCACCTTAGTGCTTCAGACTCAGAAACATAGACTGTGCTCA  998

seq1  GATGGCTCCAGGCCCTCTGCTAAGCCTGCAGGATCTGTGCAGCCTGGGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GATGGCTCCAGGCCCTCTGCTAAGCCTGCAGGATCTGTGCAGCCTGGGAC  1048

seq1  CTCGGCTCTAATG-AAGCTTGTGTGAGAAG-AGATGGCGG-CACTTGAGT  1096
      ||||||||||||| |||||||||||| ||| ||||||||| |||||||| 
seq2  CTCGGCTCTAATGAAAGCTTGTGTGAAAAGAAGATGGCGGCCACTTGAG-  1097

seq1  TTTGCTCTCCCCTTGGCATCCTGT-AATGTGGCTCATTTTGTTTTGAAGG  1145
      || ||||||||||||||||||||| ||||| |||||||||| |||  || 
seq2  TTCGCTCTCCCCTTGGCATCCTGTAAATGT-GCTCATTTTGGTTTTGAG-  1145

seq1  TAGCTTGTTCCATGGAAA  1163
       | ||  |||||||||||
seq2  -AACTGTTTCCATGGAAA  1162

seq1: chr1_179054198_179055333
seq2: B6Ng01-270P05.g_63_1185 (reverse)

seq1  GCCAGAGCCTGACAAATAGA-GAGGTGGA-TGCTTGGAACCAA-CTATTG  47
      ||||| |||||||||||||| |||||||| ||||||||||||| ||||| 
seq2  GCCAG-GCCTGACAAATAGAGGAGGTGGATTGCTTGGAACCAATCTATT-  48

seq1  GACTGAGCATGGGGTCCCCAATGGAGGAGTTAGAGAAATGACTGAAGGAG  97
      ||||||||||||| ||||||||||||||| |||||||||||||||  |||
seq2  GACTGAGCATGGGTTCCCCAATGGAGGAG-TAGAGAAATGACTGA--GAG  95

seq1  CTGAAGGGGTTTACAACCCCATAGAAAGAACAACAATATCAACCAACCAG  147
      ||||| |||||||||  ||||||| ||||   || ||||||||||  |||
seq2  CTGAA-GGGTTTACA--CCCATAG-AAGA--CACCATATCAACCA--CAG  137

seq1  ACCCCCTAGAGCTCCCAGGGACCTAAACCACCAACCAAAGATTACACATG  197
      | ||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  A-CCCCTAGAGCT-CCAGGGA-CTAAACCACCAACCAAAGATTACACATG  184

seq1  GATGGACCCTTGGCTCCAGCCACATATGTAGCAGAGGATGGCATTGTCGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACCCTTGGCTCCAGCCACATATGTAGCAGAGGATGGCATTGTCGG  234

seq1  GTATCAATGGGAGAAGAAGCCCTTGGTCCTGTGAAGGTTCAATGCTCCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAATGGGAGAAGAAGCCCTTGGTCCTGTGAAGGTTCAATGCTCCAG  284

seq1  TGTAGGGGAATGCCAGGGCAGGGAGGGAGGAATGGGTGGGAGGGAGAACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGAATGCCAGGGCAGGGAGGGAGGAATGGGTGGGAGGGAGAACA  334

seq1  CCCTCATAGAAGCAGGAGGATAGAGATGGGATAGAAGGTTTTCAAAGGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATAGAAGCAGGAGGATAGAGATGGGATAGAAGGTTTTCAAAGGGG  384

seq1  AAGCCAGGAAAGGGGATAACATTTGAAATGTAAATAAAGAAACTATCTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGAAAGGGGATAACATTTGAAATGTAAATAAAGAAACTATCTAA  434

seq1  TAAAATATTCATTTTGGCCACTAAACCCATTTTTCTCTTCATCTACTATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTCATTTTGGCCACTAAACCCATTTTTCTCTTCATCTACTATG  484

seq1  TATCCAATGATACTATACAGTGTCTATGTCAAATTCCTATATAAAAAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAATGATACTATACAGTGTCTATGTCAAATTCCTATATAAAAAAAC  534

seq1  TATGATATAATCCTCTAGGTACCATGTTAGATACTAAATGATCAACAGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATAATCCTCTAGGTACCATGTTAGATACTAAATGATCAACAGAC  584

seq1  TTTTAAAATTTAATTATTCTGAATTTTCATAATTCATATCTATCTAGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTTAATTATTCTGAATTTTCATAATTCATATCTATCTAGACA  634

seq1  GTTAATGACCCTTCTAGATATATAAGATAAATGCTAAATCTAAATTTCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGACCCTTCTAGATATATAAGATAAATGCTAAATCTAAATTTCTC  684

seq1  TCTCCATATGTTTTGATTTAACCCATGAACTTATTTGTCTCCAAATCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATATGTTTTGATTTAACCCATGAACTTATTTGTCTCCAAATCTGA  734

seq1  AATCTGACTCTAACTTCAGCCATAAAGATCATTTGGGTGGTTTTAAGAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGACTCTAACTTCAGCCATAAAGATCATTTGGGTGGTTTTAAGAAC  784

seq1  CATAATTTTCTATTTTCAATGTGAGTAAAAAATAGGTTAGATAGGAAACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTCTATTTTCAATGTGAGTAAAAAATAGGTTAGATAGGAAACA  834

seq1  TTCATTTAAAAGAGGGGCAGCTAGGAGTGTAGAAATCCTATCATTTATAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAAAAGAGGGGCAGCTAGGAGTGTAGAAATCCTATCATTTATAA  884

seq1  AAGAGAATAAAGAAAAGTTTTGGAAAAGAGACAATTTCAGGATAGACCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATAAAGAAAAGTTTTGGAAAAGAGACAATTTCAGGATAGACCAA  934

seq1  TATTTGCAGCACATAAGGCAGACTTGTAGGAGGAGTTTCTTGAGACAGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAGCACATAAGGCAGACTTGTAGGAGGAGTTTCTTGAGACAGGT  984

seq1  GCTGGCATACCCTGCTTCTCACCATACAGAATAAGTAGGGACCTTGCAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATACCCTGCTTCTCACCATACAGAATAAGTAGGGACCTTGCAAA  1034

seq1  CACAGGATGAACCTAAAGACATCTGGGCAGTTATTCACTCTTCCATAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATGAACCTAAAGACATCTGGGCAGTTATTCACTCTTCCATAGAA  1084

seq1  GAATTTTTCCCTCTTTGAAGTTTAATAATCTAAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTCCCTCTTTGAAGTTTAATAATCTAAGAATTC  1123