BAC Information

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BAC

Clone NameB6Ng01-271B08
Chromosome1 (Build37)
Map Location 143,017,477 - 143,127,401
singlet/doubletdoublet
Overlap genenone
Upstream geneCfh, Kcnt2
Downstream geneEG226472, LOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271B08.bB6Ng01-271B08.g
ACCGA073259GA073260
length9101,159
definitionB6Ng01-271B08.b B6Ng01-271B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,017,477 - 143,018,351)(143,126,244 - 143,127,401)
sequence
gaattctttacaatgagtctttcatgaaaacacataaaacaaattgaatc
aggtatttgtttaatttatccttaacccagtattttaagtgtaagtataa
aaatatcattttaaaaatctgtcatttctccagtgatttgaaatgtgaac
tctgtaatatttctgcatttttgttcttcatatttatgtacctgaaatat
tctgttctaaattttgtaattttaatcacattgatatattccatgacatt
gattcctcacttatacttccattcggttttatagctacacttctagatcc
attaaatttatttattttaaactggacttttctgattaaaattctgtatt
ttcttgaacttgtttgaatgcatgtatttgtatacattaactattactat
taaaatatgctaagctggataatgtaaagtaactgatatttgttatttta
ctcattttctgagtgtcttgagatcagtcctggctaatcttggatctcat
gaggttgtagttcagttgtatatatcagcaatcccaatacaagggctggt
ggcagatctctttcccactggctgttggctgtagccttctgtttccatca
agatgggtctcttgatagtgtcttataaaatacagcaggctggattacac
aaagaatgtaacccaagtaagagtggggtacagagctaaagtcacattat
ttcatataactttttaagattataatataattatatcatatttcctttcc
ttttctccctccaaaaccaccaataaaccccttcttgctctcttttaaat
ctatggccacgtttaaattgaattgttattacaagtattttttaatatgt
atataaaaatacaatcctaaatatatctgctcagtttagaataatgtatg
tacactttta

gaattcactcagcggggtcctggaaccaaatgtctgctaccgatgctcag
gcaaagtgctccctctccgctcggacccctttcctctggcctggaaggtg
gcaggatgtctggggcctgtgcagaatgcactcagtggggtcctggaacc
aggatgtctgctgatgatgctcaggcaaagtgctccctctctgctcggac
ccctttcctctgggaaggtggctggatgtctggggactgtgcagaatcct
cactctactttcaaagtgataattagtctgtgaacccattaattcaaaag
taactgccaatagcagtgccatattgaaaatactaaatataacatctata
aaacttcataaaaatcttatatatttctcaaagtttatttagttaaatgg
acaaagcagtttaatgaacagttttgaaaataaatgtgttataaaattca
ctcttagttacccactaaattcttactgcttctgatttgccaatagaatt
atttttacaaactgaagtgatgtttttttttttaccactcaaagatttaa
caatagctatgtgagagttggaattagtgaaatataacataagcatatgc
acatgttaatttatgtgcatgttttataaaatctttcctggagtttagca
tttgaatagatacgttatgagattcataagattctctttgggatatcaac
actaaggttatttatatgaaatattgtatttcaaatctcattctttaaac
aataaaattaaaaccaaggccagtgatttggcacatttggtagagattca
taccattaaactaatgaaccaatccatagaatctacttagttgaagtaga
gaaatgacttctgaaatttgtcctttaacccctacacagggtgccatgac
atgaacacacataactacacacacacaaaaaacatagttttaaaaatgaa
attaattaaagtcattaaaaaatccctttttaatagcagcttctttaaaa
gaaaagaagatggtgaaatacctcttttcggttgtacaaaactgggattt
ggtggtggagggtctcaggctagttggagtcatcagaatggatcatggag
gcatattataatgccaagcacagtcctctctttcgtctgttaatgggcca
tttattcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143017477_143018351
seq2: B6Ng01-271B08.b_44_918

seq1  GAATTCTTTACAATGAGTCTTTCATGAAAACACATAAAACAAATTGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAATGAGTCTTTCATGAAAACACATAAAACAAATTGAATC  50

seq1  AGGTATTTGTTTAATTTATCCTTAACCCAGTATTTTAAGTGTAAGTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTGTTTAATTTATCCTTAACCCAGTATTTTAAGTGTAAGTATAA  100

seq1  AAATATCATTTTAAAAATCTGTCATTTCTCCAGTGATTTGAAATGTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCATTTTAAAAATCTGTCATTTCTCCAGTGATTTGAAATGTGAAC  150

seq1  TCTGTAATATTTCTGCATTTTTGTTCTTCATATTTATGTACCTGAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATATTTCTGCATTTTTGTTCTTCATATTTATGTACCTGAAATAT  200

seq1  TCTGTTCTAAATTTTGTAATTTTAATCACATTGATATATTCCATGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTAAATTTTGTAATTTTAATCACATTGATATATTCCATGACATT  250

seq1  GATTCCTCACTTATACTTCCATTCGGTTTTATAGCTACACTTCTAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCACTTATACTTCCATTCGGTTTTATAGCTACACTTCTAGATCC  300

seq1  ATTAAATTTATTTATTTTAAACTGGACTTTTCTGATTAAAATTCTGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTATTTATTTTAAACTGGACTTTTCTGATTAAAATTCTGTATT  350

seq1  TTCTTGAACTTGTTTGAATGCATGTATTTGTATACATTAACTATTACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAACTTGTTTGAATGCATGTATTTGTATACATTAACTATTACTAT  400

seq1  TAAAATATGCTAAGCTGGATAATGTAAAGTAACTGATATTTGTTATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGCTAAGCTGGATAATGTAAAGTAACTGATATTTGTTATTTTA  450

seq1  CTCATTTTCTGAGTGTCTTGAGATCAGTCCTGGCTAATCTTGGATCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTCTGAGTGTCTTGAGATCAGTCCTGGCTAATCTTGGATCTCAT  500

seq1  GAGGTTGTAGTTCAGTTGTATATATCAGCAATCCCAATACAAGGGCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGTAGTTCAGTTGTATATATCAGCAATCCCAATACAAGGGCTGGT  550

seq1  GGCAGATCTCTTTCCCACTGGCTGTTGGCTGTAGCCTTCTGTTTCCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCTCTTTCCCACTGGCTGTTGGCTGTAGCCTTCTGTTTCCATCA  600

seq1  AGATGGGTCTCTTGATAGTGTCTTATAAAATACAGCAGGCTGGATTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTCTCTTGATAGTGTCTTATAAAATACAGCAGGCTGGATTACAC  650

seq1  AAAGAATGTAACCCAAGTAAGAGTGGGGTACAGAGCTAAAGTCACATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGTAACCCAAGTAAGAGTGGGGTACAGAGCTAAAGTCACATTAT  700

seq1  TTCATATAACTTTTTAAGATTATAATATAATTATATCATATTTCCTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAACTTTTTAAGATTATAATATAATTATATCATATTTCCTTTCC  750

seq1  TTTTCTCCCTCCAAAACCACCAATAAACCCCTTCTTGCTCTCTTTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCCTCCAAAACCACCAATAAACCCCTTCTTGCTCTCTTTTAAAT  800

seq1  CTATGGCCACGTTTAAATTGAATTGTTATTACAAGTATTTTTTAATATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCCACGTTTAAATTGAATTGTTATTACAAGTATTTTTTAATATGT  850

seq1  ATATAAAAATACAATCCTAAATATA  875
      |||||||||||||||||||||||||
seq2  ATATAAAAATACAATCCTAAATATA  875


seq1: chr1_143126244_143127401
seq2: B6Ng01-271B08.g_65_1223 (reverse)

seq1  TGGAAAATTAAATGGCACAATAAAAAAAGAAAGAAAGAGAGATGTGCTT-  49
      |||||   |||||||| || ||| | | |||||  ||||   ||||||| 
seq2  TGGAA---TAAATGGCCCATTAACAGACGAAAG--AGAGGACTGTGCTTG  45

seq1  GCATTATAATATGC--TCATGATTCATTCTGAATGGAACTCAAAATAAGC  97
      ||||||||||||||   |||||| ||||||| |||  |||| || | |||
seq2  GCATTATAATATGCCTCCATGATCCATTCTG-ATG--ACTCCAACT-AGC  91

seq1  TTGAGACCTCACA----CAAATCCAGTTTTTGTACAAC--GAAAGAGGTA  141
       |||||||   ||    |||||||   |||||||||||   |||||||||
seq2  CTGAGACCCTCCACCACCAAATCCCAGTTTTGTACAACCGAAAAGAGGTA  141

seq1  TTTCA-CATC-TCTTTTCTTTTAAAGAAGCTGCTATTAAAAAGGGATTTT  189
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCATCTTCTTTTCTTTTAAAGAAGCTGCTATTAAAAAGGGATTTT  191

seq1  TTAATGACTTTAATTTAATTTCATTTTTAAAACTATGTTTTTTTGTGTGT  239
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TTAATGACTTTAA-TTAATTTCATTTTTAAAACTATG-TTTTTTGTGTGT  239

seq1  GTGTAGTTATGTGTGTTCATGTCATGGCA-CCTGTGTAGGGGTTAAAGGA  288
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGTAGTTATGTGTGTTCATGTCATGGCACCCTGTGTAGGGGTTAAAGGA  289

seq1  CAAATTTCAGAAGTCATTTCTCTACTTCAACTAAGTAGATTCTATGGATT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCAGAAGTCATTTCTCTACTTCAACTAAGTAGATTCTATGGATT  339

seq1  GGTTCATTAGTTTAATGGTATGAATCTCTACCAAATGTGCCAAATCACTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTAGTTTAATGGTATGAATCTCTACCAAATGTGCCAAATCACTG  389

seq1  GCCTTGGTTTTAATTTTATTGTTTAAAGAATGAGATTTGAAATACAATAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTTTTAATTTTATTGTTTAAAGAATGAGATTTGAAATACAATAT  439

seq1  TTCATATAAATAACCTTAGTGTTGATATCCCAAAGAGAATCTTATGAATC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAAATAACCTTAGTGTTGATATCCCAAAGAGAATCTTATGAATC  489

seq1  TCATAACGTATCTATTCAAATGCTAAACTCCAGGAAAGATTTTATAAAAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACGTATCTATTCAAATGCTAAACTCCAGGAAAGATTTTATAAAAC  539

seq1  ATGCACATAAATTAACATGTGCATATGCTTATGTTATATTTCACTAATTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATAAATTAACATGTGCATATGCTTATGTTATATTTCACTAATTC  589

seq1  CAACTCTCACATAGCTATTGTTAAATCTTTGAGTGGTAAAAAAAAAAACA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCACATAGCTATTGTTAAATCTTTGAGTGGTAAAAAAAAAAACA  639

seq1  TCACTTCAGTTTGTAAAAATAATTCTATTGGCAAATCAGAAGCAGTAAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCAGTTTGTAAAAATAATTCTATTGGCAAATCAGAAGCAGTAAGA  689

seq1  ATTTAGTGGGTAACTAAGAGTGAATTTTATAACACATTTATTTTCAAAAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGGGTAACTAAGAGTGAATTTTATAACACATTTATTTTCAAAAC  739

seq1  TGTTCATTAAACTGCTTTGTCCATTTAACTAAATAAACTTTGAGAAATAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTAAACTGCTTTGTCCATTTAACTAAATAAACTTTGAGAAATAT  789

seq1  ATAAGATTTTTATGAAGTTTTATAGATGTTATATTTAGTATTTTCAATAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTTTTATGAAGTTTTATAGATGTTATATTTAGTATTTTCAATAT  839

seq1  GGCACTGCTATTGGCAGTTACTTTTGAATTAATGGGTTCACAGACTAATT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCTATTGGCAGTTACTTTTGAATTAATGGGTTCACAGACTAATT  889

seq1  ATCACTTTGAAAGTAGAGTGAGGATTCTGCACAGTCCCCAGACATCCAGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTGAAAGTAGAGTGAGGATTCTGCACAGTCCCCAGACATCCAGC  939

seq1  CACCTTCCCAGAGGAAAGGGGTCCGAGCAGAGAGGGAGCACTTTGCCTGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCCAGAGGAAAGGGGTCCGAGCAGAGAGGGAGCACTTTGCCTGA  989

seq1  GCATCATCAGCAGACATCCTGGTTCCAGGACCCCACTGAGTGCATTCTGC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATCAGCAGACATCCTGGTTCCAGGACCCCACTGAGTGCATTCTGC  1039

seq1  ACAGGCCCCAGACATCCTGCCACCTTCCAGGCCAGAGGAAAGGGGTCCGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCCCAGACATCCTGCCACCTTCCAGGCCAGAGGAAAGGGGTCCGA  1089

seq1  GCGGAGAGGGAGCACTTTGCCTGAGCATCGGTAGCAGACATTTGGTTCCA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGAGGGAGCACTTTGCCTGAGCATCGGTAGCAGACATTTGGTTCCA  1139

seq1  GGACCCCGCTGAGTGAATTC  1158
      ||||||||||||||||||||
seq2  GGACCCCGCTGAGTGAATTC  1159


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