BAC Information

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BAC

Clone NameB6Ng01-271H18
Chromosome6 (Build37)1 (Build37)
Map Location 80,986,234 - 80,986,67349,630,574 - 49,631,222
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043390
Downstream geneLOC100042991, LOC232143, 1700009C05Rik, AW146020, Mrpl19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271H18.bB6Ng01-271H18.g
ACCGA073554GA073555
length977649
definitionB6Ng01-271H18.b B6Ng01-271H18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,986,234 - 80,986,673)(49,630,574 - 49,631,222)
sequence
gaattctttgattagttttgtatccatttttaatagcgttttttgattct
ctggagtccaacttcttgagttctttgtatgtatcagatattatcccttt
atgagatgggggactgataaagatcttttccatgtgttttgtttctgggt
tacatcacttggggtgatattttctacttccatccatttgcctgcgaatt
tcatgaagtcattggttaagcagttcaattcatccaaatattttaaaaaa
tatttattattataaatgtctgtttaaatgtaaagccattatagtttaaa
gttatgattatgtattcctataggaatgtagaatataggaagtccagtcc
atcattagtgaagaaaactggaatcaccataataaggattttttgatgaa
ttttatataaatatccatctgttgctggcaaggatgtggagaaggaggaa
cactcctccactgttggtgggaatgcaagcttgtacaaccactctggaaa
tcagtctggtggttgctcataaaattggacatggtactaccggagaatcc
tgcaatacctcgcctggtcatatatccagaagatgttccaactagtaaga
aagaaacatgctccactatgttcatagcagccttatttataatagccaga
agctggaaagaacccagatgccccttaacagaggaatggatacatttttt
tttttacacaatggagtactactcagctattaaaaagaattaatttatga
aattcctaggcaaatggttggacctggagggcattatcctgagtgaggta
acccaatcacaaaagaactcacacaatatgtactcaatgataagtggata
ttagcccagaaacttagaatacccaagatataagttacaattttgcaaaa
cacatgaaactcaagaagaatgaagactaaagtgtggacactttgcccct
tcttagaattgggaacaaaacacacat

gaattcactctctgagctatgtgactttttttgtatatacttaaataata
tttactgcagtatttgaaatcttaaaataaacatttactttgcccctaat
gccagatttgtaagccttttattatttacattttcatatgtatttatttt
attattattttaaattttcagatatattattattatcaatgtctgatttt
atagtatatttacatgtacacatgtgtatgtgttggctcatgtgcatgca
ttaagatgtggaagatagagttcacgtcaagagccttctacagttttccc
atttacttgtgagactacatctctaactgtgctagaactccctaatttgg
tagactgactgaccacctgttcctgttcttccagtgttaggactacagcc
atctgtcaccaaactaagctctgactggggactagctatcacaactcaga
ttcttgtcatgtaacaacatgggatttattgactaagtcttcttcatagc
ccttgaaagagatacttttgattttattagtattaaagaatgacatatat
ttctgaaccagaaaataaatgagatttttattctcatctctctctgtata
tatatatatatatatatatatatatatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80986234_80986673
seq2: B6Ng01-271H18.b_473_906 (reverse)

seq1  GGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTGTTTTGTGA  50
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GGCTAATATCCACTTATCATTGAGTACATATTGTGTGAGTTCTTTTGTGA  50

seq1  TTGGGTTACCTCACTCAGGATAATGCCCTCCAGGTCCAACCATTTGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTACCTCACTCAGGATAATGCCCTCCAGGTCCAACCATTTGCCTA  100

seq1  GGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAATACTCCATTGTG  150
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  GGAATTTCATAAATTAATTCTTTTTAATAGCTGAGTAGTACTCCATTGTG  150

seq1  TAAATGTACCACATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGG  200
      ||||      | |     |||||||||||||||||| |||||||||||||
seq2  TAAA------AAAAAAAATGTATCCATTCCTCTGTTAAGGGGCATCTGGG  194

seq1  TTCTTTCCAGCTTCTGGCTATTACAAATAAGGCTGCTATGAACATAGTTG  250
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  TTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGG  244

seq1  AGCATGTGTCCTTCTTACCCTTTGGAACATCTCCTGGATATATGCCCAGG  300
      ||||||| || |||||||   ||||||||||| ||||||||||| |||||
seq2  AGCATGTTTCTTTCTTACTAGTTGGAACATCTTCTGGATATATGACCAGG  294

seq1  AGAGGTATTGCGGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAG  350
       |||||||||| |||| |||||||||||| |||||||||||| |||| | 
seq2  CGAGGTATTGCAGGATTCTCCGGTAGTACCATGTCCAATTTTATGAGCAA  344

seq1  CCGCCAGACTAATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAAC  400
      || ||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  CCACCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCATTCCCACCAAC  394

seq1  AATGGAGGAGTGTTCCTCTTTCTCCACATCCTTGCCAGCA  440
      | |||||||||||||||| |||||||||||||||||||||
seq2  AGTGGAGGAGTGTTCCTCCTTCTCCACATCCTTGCCAGCA  434


seq1: chr1_49630574_49631222
seq2: B6Ng01-271H18.g_67_715

seq1  GAATTCACTCTCTGAGCTATGTGACTTTTTTTGTATATACTTAAATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCTGAGCTATGTGACTTTTTTTGTATATACTTAAATAATA  50

seq1  TTTACTGCAGTATTTGAAATCTTAAAATAAACATTTACTTTGCCCCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGCAGTATTTGAAATCTTAAAATAAACATTTACTTTGCCCCTAAT  100

seq1  GCCAGATTTGTAAGCCTTTTATTATTTACATTTTCATATGTATTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTTGTAAGCCTTTTATTATTTACATTTTCATATGTATTTATTTT  150

seq1  ATTATTATTTTAAATTTTCAGATATATTATTATTATCAATGTCTGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTTTAAATTTTCAGATATATTATTATTATCAATGTCTGATTTT  200

seq1  ATAGTATATTTACATGTACACATGTGTATGTGTTGGCTCATGTGCATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATATTTACATGTACACATGTGTATGTGTTGGCTCATGTGCATGCA  250

seq1  TTAAGATGTGGAAGATAGAGTTCACGTCAAGAGCCTTCTACAGTTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGTGGAAGATAGAGTTCACGTCAAGAGCCTTCTACAGTTTTCCC  300

seq1  ATTTACTTGTGAGACTACATCTCTAACTGTGCTAGAACTCCCTAATTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTGTGAGACTACATCTCTAACTGTGCTAGAACTCCCTAATTTGG  350

seq1  TAGACTGACTGACCACCTGTTCCTGTTCTTCCAGTGTTAGGACTACAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGACTGACCACCTGTTCCTGTTCTTCCAGTGTTAGGACTACAGCC  400

seq1  ATCTGTCACCAAACTAAGCTCTGACTGGGGACTAGCTATCACAACTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCACCAAACTAAGCTCTGACTGGGGACTAGCTATCACAACTCAGA  450

seq1  TTCTTGTCATGTAACAACATGGGATTTATTGACTAAGTCTTCTTCATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCATGTAACAACATGGGATTTATTGACTAAGTCTTCTTCATAGC  500

seq1  CCTTGAAAGAGATACTTTTGATTTTATTAGTATTAAAGAATGACATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAAGAGATACTTTTGATTTTATTAGTATTAAAGAATGACATATAT  550

seq1  TTCTGAACCAGAAAATAAATGAGATTTTTATTCTCATCTCTCTCTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACCAGAAAATAAATGAGATTTTTATTCTCATCTCTCTCTGTATA  600

seq1  TATATATATATATATATATATATATATATATATATATATATATATATAT  649
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATAT  649


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