BAC Information

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BAC

Clone NameB6Ng01-271I24
Chromosome1 (Build37)
Map Location 179,739,157 - 179,915,464
singlet/doubletdoublet
Overlap geneEG631584
Upstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
Downstream geneEG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271I24.bB6Ng01-271I24.g
ACCGA073608GA073609
length1,0041,155
definitionB6Ng01-271I24.b B6Ng01-271I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,739,157 - 179,740,159)(179,914,283 - 179,915,464)
sequence
gaattcctaagttcctcctgtacctgtacctggatcctgttcctccccaa
agtagaaccagagatggctagggaaggacacattgcttctgacttgagga
gttgaagcagaggttttttttttttttttcctaaaatactgtataaacgt
aaagaaattaatttccatatggagaattgatttagatactgaagatatta
cgaagttctgagagacccttaaagtaggtatgatggttcagtattcagtc
agtaatcactacctcgaaagggatatcaaaatattttagatttcacatgg
gttaaaatgcaccttaagccagatggtgatgggtcatgcctttaatccca
gcactccggaagcagaggcaggcagatctctgagtttgaggccatcatgg
tctatagagtgagctccaaggagaaactgtacagaggaactctttctcac
aaaaaaaaaaaaagtaccataagtatgctacataaaaataagaattaggg
gctggagagatggctcagcagttaagagcactgactgctcttccagagga
cctgagttcaattcccaacaaccacatgttgttggcttgcaaccatatgt
aatgggatctaatgtctcttcttgtgtgtctgaagagagccatggtatac
tcatacgataaataaataaataaataaataaataaataaataaaagaaaa
agaattatccccccccccccattacccagccaacaaggattcaaacaatt
gagccaggcttgtggtggcatatgcctttaatcctagcacttggggagga
tcttttgagttcacgtcccagcctggtctacagagagagttccagaatag
ccagagctacacagagaaaccctgtatcaagaaaaccaaaaccacaaaca
caaacaaaaagatcaaattaactgtaaagtttttctttaccaaggaaaac
acaaaaaagatcaataactgtaaggttttctttacaggagagaggggttc
tttt
gaattccagaccagcctggtctacagagtgagttccaggagaaccaggga
tacatagagaaaccctgtctcagaaaaccaaaaaaaaaaaaaaaaaaggt
tttagggctggtgagatgactcaacaggtaagagcactgactgttcttct
gaaggtcctgagttctgaaggtccataaccacctttaatgagatttgatg
ccttcttctggtatgtcagaagtcagttataatatacttatatataataa
taaatcctttttaaaaaattaaaaaaatatgttagctcttgataggaaga
cccatatcctatttctatcaactatttccctcctcaaattattagatatt
acatttaaattttcacttttaaatttcaaattcaagttttcatttcgagc
atatatctcgaagtgtaggcagaaggcatgctccaagtgcctgagtcttc
aaactcttcaagcatacctcctatatcttgccacagaacatcaccaactg
gggacactaagtattcaaaggaccaaaacagggggtgtcatttcactcaa
atcaccacacatatgatgctatcaagatcttcagacaacatatagagctt
ggtgtttgtattgagtcttctgtcttgcttaacctgatctgtgttgtagg
gcaagcggaaccgtatcaccagacaaaaactgggaaggttgagaggattc
acaaaccccagtacttctcctatctgagaaccacaggtgttctcatgtac
tgcacctggttcctgtcctggtgcccatgactatgacaccccacaggaac
agcacagaacagagttcgccatgctaacgaggtatctagatgggttggcc
ccaagggtttagccaatagcttccctcctcagacattcctttctgcaaaa
ggaacttaatctttgctccacctttcagtaccctggcctgagtgtttgca
gttcttcaagttagatgacttaataacagctgtcctccctctctagccgt
cacgcaatcactgtgcatccacctggaagtggtcttcgaattctaggatc
actctgtgatcgctagtattcacggcgctattttcttcattaatttcgct
catcattttatgaggatgcttgagtagctatggcctcgtactctggggga
gacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_179739157_179740159
seq2: B6Ng01-271I24.b_49_1052

seq1  GAATTCCTAAGTTCCTCCTGTACCTGTACCTGGATCCTGTTCCTCCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGTTCCTCCTGTACCTGTACCTGGATCCTGTTCCTCCCCAA  50

seq1  AGTAGAACCAGAGATGGCTAGGGAAGGACACATTGCTTCTGACTTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAACCAGAGATGGCTAGGGAAGGACACATTGCTTCTGACTTGAGGA  100

seq1  GTTGAAGCAGAGGTTTTTTTTTTTTTTTTCCTAAAATACTGTATAAACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGCAGAGGTTTTTTTTTTTTTTTTCCTAAAATACTGTATAAACGT  150

seq1  AAAGAAATTAATTTCCATATGGAGAATTGATTTAGATACTGAAGATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTAATTTCCATATGGAGAATTGATTTAGATACTGAAGATATTA  200

seq1  CGAAGTTCTGAGAGACCCTTAAAGTAGGTATGATGGTTCAGTATTCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTTCTGAGAGACCCTTAAAGTAGGTATGATGGTTCAGTATTCAGTC  250

seq1  AGTAATCACTACCTCGAAAGGGATATCAAAATATTTTAGATTTCACATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCACTACCTCGAAAGGGATATCAAAATATTTTAGATTTCACATGG  300

seq1  GTTAAAATGCACCTTAAGCCAGATGGTGATGGGTCATGCCTTTAATCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATGCACCTTAAGCCAGATGGTGATGGGTCATGCCTTTAATCCCA  350

seq1  GCACTCCGGAAGCAGAGGCAGGCAGATCTCTGAGTTTGAGGCCATCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCGGAAGCAGAGGCAGGCAGATCTCTGAGTTTGAGGCCATCATGG  400

seq1  TCTATAGAGTGAGCTCCAAGGAGAAACTGTACAGAGGAACTCTTTCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGAGTGAGCTCCAAGGAGAAACTGTACAGAGGAACTCTTTCTCAC  450

seq1  AAAAAAAAAAAAAGTACCATAAGTATGCTACATAAAAATAAGAATTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGTACCATAAGTATGCTACATAAAAATAAGAATTAGGG  500

seq1  GCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGA  550

seq1  CCTGAGTTCAATTCCCAACAACCACATGTTGTTGGCTTGCAACCATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAATTCCCAACAACCACATGTTGTTGGCTTGCAACCATATGT  600

seq1  AATGGGATCTAATGTCTCTTCTTGTGTGTCTGAAGAGAGCCATGGTATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATCTAATGTCTCTTCTTGTGTGTCTGAAGAGAGCCATGGTATAC  650

seq1  TCATACGATAAATAAATAAATAAATAAATAAATAAATAAATAAAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACGATAAATAAATAAATAAATAAATAAATAAATAAATAAAAGAAAA  700

seq1  AGAATTATCCCCCCCCCCCCATTACCCAGCCAACAAGGATTCAAACAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATCCCCCCCCCCCCATTACCCAGCCAACAAGGATTCAAACAATT  750

seq1  GAGCCAGGCTTGTGGTGGCATATGCCTTTAATCCTAGCACTT-GGGAGGA  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGCCAGGCTTGTGGTGGCATATGCCTTTAATCCTAGCACTTGGGGAGGA  800

seq1  TC-TTTGAGTTCACGT-CCAGCCTGGTCTACAGAGAGAGTTCCAGAATAG  847
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGTTCACGTCCCAGCCTGGTCTACAGAGAGAGTTCCAGAATAG  850

seq1  CCAGAGCTACACAGAGAAACCCTGTATCAAGAAAACCAAAACCACAAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCAGAGCTACACAGAGAAACCCTGTATCAAGAAAACCAAAACCACAAAC-  899

seq1  ACAAACAAAAAAGATCAAA-TAACTGTAAAG-TTTTCTTTA-CAAGGAAA  944
      |||||| |||||||||||| ||||||||||| ||||||||| ||||||||
seq2  ACAAAC-AAAAAGATCAAATTAACTGTAAAGTTTTTCTTTACCAAGGAAA  948

seq1  ACAACAAAAAAGATCAAATAACTGTAAGGTTTTCTTTACAAGGAGAGAGG  994
      || |||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  AC-ACAAAAAAGATC-AATAACTGTAAGGTTTTCTTTAC-AGGAGAGAGG  995

seq1  GGTTCTTTT  1003
      |||||||||
seq2  GGTTCTTTT  1004

seq1: chr1_179914283_179915464
seq2: B6Ng01-271I24.g_68_1222 (reverse)

seq1  GCGTCT-CCCCAGAGGTGAACCGGAGCCAATACACCCTCACCTCCAAGGC  49
      |||||| |||||||   | ||  ||| | |||    |||       | ||
seq2  GCGTCTCCCCCAGA---GTAC--GAGGCCATAGCTACTC-------AAGC  38

seq1  ATCCTCATAAAAATGAATGAAGCGAAAATTTATGAAGAAAATAGCGCCGT  99
      |||||||| |||||| ||| |||| ||||| |||||||||||||||||| 
seq2  ATCCTCAT-AAAATG-ATG-AGCG-AAATTAATGAAGAAAATAGCGCCG-  83

seq1  TGAATTATTTAGCGATCACAGAGGTGATCCTAGAATCCGAAGACCACTTT  149
      |||||    ||||||||||||| ||||||||||||| |||||||||| ||
seq2  TGAAT--ACTAGCGATCACAGA-GTGATCCTAGAATTCGAAGACCAC-TT  129

seq1  CCAGGT-GATGCAACAGGTGGATGGCGTGACCGCTAGAGAGGGAAGGACA  198
      |||||| ||||| ||||   ||| ||||||| ||||||||||| ||||||
seq2  CCAGGTGGATGC-ACAG--TGATTGCGTGACGGCTAGAGAGGG-AGGACA  175

seq1  GCCTTGTTTATTAAGTCATCTAACTTTGAAGAACTGCAAACACTCAGGCC  248
      ||  || ||||||||||||||||| |||||||||||||||||||||||||
seq2  GC--TG-TTATTAAGTCATCTAAC-TTGAAGAACTGCAAACACTCAGGCC  221

seq1  AGGGTACTG-AAGGTGGAGCAAAGATTAAGTTCCTTTTGCAGAAAGGAAT  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTGAAAGGTGGAGCAAAGATTAAGTTCCTTTTGCAGAAAGGAAT  271

seq1  GTCTGAGGAGGGAAGCTTATTGGCTAAACCCTTGGGGCCAACCCATCTAG  347
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCTGAGGAGGGAAGC-TATTGGCTAAACCCTTGGGGCCAACCCATCTAG  320

seq1  ATACCTCGTTAGCATGGCGAACTCTGTTCTGTGCTGTTCCTGTGGGGTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCGTTAGCATGGCGAACTCTGTTCTGTGCTGTTCCTGTGGGGTGT  370

seq1  CATAGTCATGGGCACCAGGACAGGAACCAGGTGCAGTACATGAGAACACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCATGGGCACCAGGACAGGAACCAGGTGCAGTACATGAGAACACC  420

seq1  TGTGGTTCTCAGATAGGAGAAGTACTGGGGTTTGTGAATCCTCTCAACCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCTCAGATAGGAGAAGTACTGGGGTTTGTGAATCCTCTCAACCT  470

seq1  TCCCAGTTTTTGTCTGGTGATACGGTTCCGCTTGCCCTACAACACAGATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTTTTGTCTGGTGATACGGTTCCGCTTGCCCTACAACACAGATC  520

seq1  AGGTTAAGCAAGACAGAAGACTCAATACAAACACCAAGCTCTATATGTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAGCAAGACAGAAGACTCAATACAAACACCAAGCTCTATATGTTG  570

seq1  TCTGAAGATCTTGATAGCATCATATGTGTGGTGATTTGAGTGAAATGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGATCTTGATAGCATCATATGTGTGGTGATTTGAGTGAAATGACA  620

seq1  CCCCCTGTTTTGGTCCTTTGAATACTTAGTGTCCCCAGTTGGTGATGTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGTTTTGGTCCTTTGAATACTTAGTGTCCCCAGTTGGTGATGTTC  670

seq1  TGTGGCAAGATATAGGAGGTATGCTTGAAGAGTTTGAAGACTCAGGCACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAGATATAGGAGGTATGCTTGAAGAGTTTGAAGACTCAGGCACT  720

seq1  TGGAGCATGCCTTCTGCCTACACTTCGAGATATATGCTCGAAATGAAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATGCCTTCTGCCTACACTTCGAGATATATGCTCGAAATGAAAAC  770

seq1  TTGAATTTGAAATTTAAAAGTGAAAATTTAAATGTAATATCTAATAATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTGAAATTTAAAAGTGAAAATTTAAATGTAATATCTAATAATTT  820

seq1  GAGGAGGGAAATAGTTGATAGAAATAGGATATGGGTCTTCCTATCAAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGAAATAGTTGATAGAAATAGGATATGGGTCTTCCTATCAAGAG  870

seq1  CTAACATATTTTTTTAATTTTTTAAAAAGGATTTATTATTATATATAAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATATTTTTTTAATTTTTTAAAAAGGATTTATTATTATATATAAGT  920

seq1  ATATTATAACTGACTTCTGACATACCAGAAGAAGGCATCAAATCTCATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAACTGACTTCTGACATACCAGAAGAAGGCATCAAATCTCATTA  970

seq1  AAGGTGGTTATGGACCTTCAGAACTCAGGACCTTCAGAAGAACAGTCAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGTTATGGACCTTCAGAACTCAGGACCTTCAGAAGAACAGTCAGT  1020

seq1  GCTCTTACCTGTTGAGTCATCTCACCAGCCCTAAAACCTTTTTTTTTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACCTGTTGAGTCATCTCACCAGCCCTAAAACCTTTTTTTTTTTT  1070

seq1  TTTTTTGGTTTTCTGAGACAGGGTTTCTCTATGTATCCCTGGTTCTCCTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTTCTGAGACAGGGTTTCTCTATGTATCCCTGGTTCTCCTG  1120

seq1  GAACTCACTCTGTAGACCAGGCTGGTCTGGAATTC  1182
      |||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGTCTGGAATTC  1155